Rmu_sc0004000.1_g000022

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004000.1
OG0000182
Physical Location & Seq
Forward (+)
110890 .. 111909
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004000.1_g000022.1.cds

Sequence Viewer

Length: 1020 bp
atggctttcaaccctgtttctcaagctcacctggctgctaccattcgaaaaccttttccagctcgccaatatttccctttccctcgaaaccagaatgggtctgagtccatcccagttgttataggcgataataccatcaatattgataggtttgctgtccgcgttgatatgccaccaccccttccagattttgacacccactactctaggttctgtcttgtggggaaaatatttggagccttagtcactccagatgttgttctcagcaagtgttcggaactctggaataaccttaagggagccatcaatatgaccaggttggcaaacaattggttttgctttgagttcaacaacgaagaggatgtcctattcatccttgacaataggccttggtacattaggagcaggcttttcaggatccaaagatggaccccagagtttgatgccacaaccactgttattgaccgcttaatagtctgggtcagactacctaatctgcctctacctcattggaatgagtcctccctcaggcacctaggtcaatatttgggtagttatgttgtggctgatgagcttaccctatcagccaagaaaacgatgtttgcacggatcaagattgagttggatatgcgctatcctctgaaaagaacggtcttggtcaataatccagatggtaagtcttcaacattggttttggtctcttatgaagtaattttcgaggtgtgttttagatgtggcctctaccgccaaaagaatcaagtctgtcctcgaagaaatattaaggacagttttttcatggttgaaagaatggagaatgagcaggcggtttatccagcagacatggctaacaatgagttcattcagcctcttctttcaaatgatatctctattatcttcccgcaaccaatgtttaattactatgatgcgagaaattatggaaccaattcgggaaccttttctgcaaacgttggagatcaggatccaggtcaagaccatggtccttggaagatcgtttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

339

Amino Acids

39.18

Weight (kDa)

7.61

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 531
AccII CGCG 1 cut(s) 162
AciI CCGC 5 cut(s) 160, 466, 745, 824, 899
AclI AACGTT 1 cut(s) 966
AclWI GGATC 5 cut(s) 412, 425, 617, 974, 987
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 528
AflII CTTAAG 1 cut(s) 293
AgsI TTSAA 5 cut(s) 10, 349, 684, 803, 876
AjnI CCWGG 3 cut(s) 30, 314, 982
AluBI AGCT 3 cut(s) 26, 62, 574
AluI AGCT 3 cut(s) 26, 62, 574
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 5 cut(s) 412, 425, 617, 974, 987
AoxI GGCC 2 cut(s) 386, 736
ApeKI GCWGC 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
Asp700I GAANNNNTTC 2 cut(s) 943, 955
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 2 cut(s) 429, 998
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 46
AvaII GGWCC 2 cut(s) 429, 998
AvrII CCTAGG 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 527
BamHI GGATCC 2 cut(s) 417, 979
BanI GGYRCC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 672
BbvI GCAGC 1 cut(s) 22
BccI CCATC 5 cut(s) 116, 143, 311, 420, 665
BciT130I CCWGG 3 cut(s) 32, 316, 984
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 2 cut(s) 207, 536
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 36
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 32, 316, 984
Bme18I GGWCC 2 cut(s) 429, 998
BmgT120I GGNCC 2 cut(s) 429, 998
BmiI GGNNCC 8 cut(s) 238, 301, 419, 431, 533, 940, 952, 981
BmrFI CCNGG 3 cut(s) 32, 316, 984
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 433, 913
BmuI ACTGGG 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 996
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 978
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 4 cut(s) 389, 535, 994, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 113
Bse21I CCTNAGG 1 cut(s) 527
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 3 cut(s) 32, 316, 984
BseDI CCNNGG 4 cut(s) 389, 535, 994, 1001
BseGI GGATG 3 cut(s) 108, 367, 372
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMII CTCAG 3 cut(s) 93, 277, 541
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 388, 738
BshNI GGYRCC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 1 cut(s) 703
BsnI GGCC 2 cut(s) 388, 738
Bso31I GGTCTC 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 417, 609, 973, 979, 1008
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 5 cut(s) 160, 466, 745, 824, 899
BspANI GGCC 2 cut(s) 388, 738
BspCNI CTCAG 3 cut(s) 94, 276, 540
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 8 cut(s) 238, 301, 419, 431, 533, 940, 952, 981
BspPI GGATC 5 cut(s) 412, 425, 617, 974, 987
BspT104I TTCGAA 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 703
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 389, 535, 994, 1001
BssMI GATC 5 cut(s) 417, 609, 973, 979, 1008
BssT1I CCWWGG 4 cut(s) 389, 535, 994, 1001
Bst2UI CCWGG 3 cut(s) 32, 316, 984
Bst4CI ACNGT 3 cut(s) 457, 652, 788
Bst6I CTCTTC 2 cut(s) 351, 873
BstAFI CTTAAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 64, 407, 822
BstDEI CTNAG 4 cut(s) 102, 241, 263, 527
BstDSI CCRYGG 1 cut(s) 994
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 3 cut(s) 108, 367, 372
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 5 cut(s) 420, 612, 976, 982, 1011
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 5 cut(s) 417, 609, 973, 979, 1008
BstMWI GCNNNNNNNGC 3 cut(s) 32, 744, 842
BstNI CCWGG 3 cut(s) 32, 316, 984
BstPAI GACNNNNGTC 1 cut(s) 996
BstSCI CCNGG 3 cut(s) 30, 314, 982
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 2 cut(s) 417, 979
BstYI RGATCY 2 cut(s) 417, 979
Bsu36I CCTNAGG 1 cut(s) 527
BsuRI GGCC 2 cut(s) 388, 738
BtgI CCRYGG 1 cut(s) 994
BtsCI GGATG 3 cut(s) 108, 367, 372
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 64, 407, 822
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 2 cut(s) 429, 998
CsiI ACCWGGT 1 cut(s) 314
Csp6I GTAC 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 3 cut(s) 796, 841, 995
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 4 cut(s) 102, 241, 263, 527
DpnI GATC 5 cut(s) 419, 611, 975, 981, 1010
DpnII GATC 5 cut(s) 417, 609, 973, 979, 1008
Eam1104I CTCTTC 2 cut(s) 351, 873
EarI CTCTTC 2 cut(s) 351, 873
Eco130I CCWWGG 4 cut(s) 389, 535, 994, 1001
Eco147I AGGCCT 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 703
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 429, 998
Eco81I CCTNAGG 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoRII CCWGG 3 cut(s) 30, 314, 982
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 4 cut(s) 389, 535, 994, 1001
ErhI CCWWGG 4 cut(s) 389, 535, 994, 1001
FaeI CATG 3 cut(s) 799, 844, 998
FatI CATG 3 cut(s) 795, 840, 994
FauI CCCGC 1 cut(s) 906
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 3 cut(s) 95, 359, 374
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 207, 536
GlaI GCGC 1 cut(s) 632
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 2 cut(s) 388, 738
HhaI GCGC 1 cut(s) 633
Hin1II CATG 3 cut(s) 799, 844, 998
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HinfI GANTC 3 cut(s) 104, 518, 754
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 4 cut(s) 103, 277, 485, 642
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 457, 652, 788
HpyCH4IV ACGT 1 cut(s) 966
HpyCH4V TGCA 2 cut(s) 605, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 744, 842
HpyF3I CTNAG 4 cut(s) 102, 241, 263, 527
HpySE526I ACGT 1 cut(s) 966
Hsp92II CATG 3 cut(s) 799, 844, 998
HspAI GCGC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 417, 609, 973, 979, 1008
LmnI GCTCC 3 cut(s) 236, 299, 402
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 433, 913
MabI ACCWGGT 1 cut(s) 314
MaeI CTAG 2 cut(s) 207, 536
MaeII ACGT 1 cut(s) 966
MaeIII GTNAC 1 cut(s) 244
MalI GATC 5 cut(s) 419, 611, 975, 981, 1010
MboI GATC 5 cut(s) 417, 609, 973, 979, 1008
MboII GAAGA 6 cut(s) 368, 672, 783, 860, 886, 1018
MfeI CAATTG 1 cut(s) 328
MflI RGATCY 2 cut(s) 417, 979
MluCI AATT 5 cut(s) 328, 711, 913, 931, 943
MlyI GAGTC 2 cut(s) 113, 527
MmeI TCCRAC 2 cut(s) 603, 949
MroXI GAANNNNTTC 2 cut(s) 943, 955
MseI TTAA 4 cut(s) 294, 470, 780, 912
MslI CAYNNNNRTG 2 cut(s) 308, 513
MspCI CTTAAG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 32, 316, 984
MunI CAATTG 1 cut(s) 328
MvaI CCWGG 3 cut(s) 32, 316, 984
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 32, 744, 842
NcoI CCATGG 1 cut(s) 994
NdeII GATC 5 cut(s) 417, 609, 973, 979, 1008
NlaIII CATG 3 cut(s) 799, 844, 998
NlaIV GGNNCC 8 cut(s) 238, 301, 419, 431, 533, 940, 952, 981
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 943, 955
PfeI GAWTC 1 cut(s) 754
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 112, 526
PpsI GAGTC 2 cut(s) 112, 526
PshAI GACNNNNGTC 1 cut(s) 996
Psp1406I AACGTT 1 cut(s) 966
Psp6I CCWGG 3 cut(s) 30, 314, 982
PspGI CCWGG 3 cut(s) 30, 314, 982
PspN4I GGNNCC 8 cut(s) 238, 301, 419, 431, 533, 940, 952, 981
PspPI GGNCC 2 cut(s) 429, 998
PsuI RGATCY 2 cut(s) 417, 979
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 308, 513
SaqAI TTAA 4 cut(s) 294, 470, 780, 912
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 417, 609, 973, 979, 1008
Sau96I GGNCC 2 cut(s) 429, 998
SchI GAGTC 2 cut(s) 113, 527
ScrFI CCNGG 3 cut(s) 32, 316, 984
SexAI ACCWGGT 1 cut(s) 314
SfaNI GCATC 2 cut(s) 433, 913
SfuI TTCGAA 1 cut(s) 46
SinI GGWCC 2 cut(s) 429, 998
SmiMI CAYNNNNRTG 2 cut(s) 308, 513
SmlI CTYRAG 2 cut(s) 21, 293
SmoI CTYRAG 2 cut(s) 21, 293
Sse9I AATT 5 cut(s) 328, 711, 913, 931, 943
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 5 cut(s) 160, 466, 745, 824, 899
SspI AATATT 5 cut(s) 71, 142, 231, 545, 778
SspMI CTAG 2 cut(s) 207, 536
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 30, 314, 982
StyI CCWWGG 4 cut(s) 389, 535, 994, 1001
TaaI ACNGT 3 cut(s) 457, 652, 788
TaiI ACGT 1 cut(s) 969
TaqI TCGA 4 cut(s) 46, 85, 717, 769
TasI AATT 5 cut(s) 328, 711, 913, 931, 943
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 4 cut(s) 294, 470, 780, 912
Tru9I TTAA 4 cut(s) 294, 470, 780, 912
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 361, 720, 784, 847
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 429, 998
XagI CCTNNNNNAGG 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 535
XmnI GAANNNNTTC 2 cut(s) 943, 955
XspI CTAG 2 cut(s) 207, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.