RLG00000022569

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000182
Physical Location & Seq
Reverse (-)
3976773 .. 3978926
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022569

Sequence Viewer

Length: 771 bp
ATGGGTCTTTCGTCGAATACCTCGCCTACAGTCTCAATTTGTCTCTGCGTTTCCCAATCTCTAATTTCGCCTCCACCTTGGCGCAACTTTGAGCTACCGGGCAGGATTGGGTTGATGTCCTACCCACTCAACAGCCATCTGCTCATTTATAAGTACAAGATCAGGAACTGCCCTTTTAAAAGGAGGGATAAACTCTTCGTGATGGTAGATAAGGAGGAAGGGGATGATGATGTTGTCCCTGCTAACATGTATGTGGAACCAGAGGTCAAGCAATTGGCAACAGCGAAGGCTATGCTTTATTTCCCTCAACTTGTCAAGGAGGTTTATCCTAATGATCTCACTGTCAATCCCCCATCACCTGGATGGAAGTTGGTTCGTGGCAGGAACCAGAGCTACTCTTTAGCTAAGGGATCAGATGAAGGTGCTTGGCTGCGACAAAAAGGGAAGGCAGTTATGGAGTCAGGTAGTGCCAGCCAAAATACTCGCAAGGACGCTTTGGTTAAGCCAGGAATTAGCTTTAAGGATGCAACCCAGGGACGCGGTACTATTATCATTGGTGACAAGGATACCCACAACAGGACCACTAACTCTCACAAGCTCTCATCCTCTAGTGAGGAGGAAGTGTTTGAGAATTTCAGTGATGCTAGAGCATCTGTTTTTGCTGGTGAGGATCAAGCTATGAATGAGTATGAAGTTAGGATGATTAATGGAAGAAGGACACTGGTTTTTGCTACTGAGGACTCAGGAAGAGATTCTGGATCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.51

Weight (kDa)

8.85

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 359
AccII CGCG 1 cut(s) 540
AciI CCGC 1 cut(s) 540
AclWI GGATC 3 cut(s) 418, 678, 766
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 2 cut(s) 155, 544
AfiI CCNNNNNNNGG 2 cut(s) 359, 576
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 3 cut(s) 358, 505, 531
AluBI AGCT 6 cut(s) 94, 393, 404, 516, 598, 677
AluI AGCT 6 cut(s) 94, 393, 404, 516, 598, 677
Alw26I GTCTC 2 cut(s) 37, 47
AlwI GGATC 3 cut(s) 418, 678, 766
AlwNI CAGNNNCTG 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 1 cut(s) 631
AseI ATTAAT 1 cut(s) 705
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 348, 569, 677
AvaII GGWCC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 417
BccI CCATC 4 cut(s) 144, 196, 357, 361
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 3 cut(s) 360, 507, 533
BciVI GTATCC 1 cut(s) 559
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 37, 47
BfaI CTAG 2 cut(s) 609, 645
BfmI CTRYAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 4 cut(s) 99, 360, 507, 533
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 258, 386
BmrFI CCNGG 4 cut(s) 99, 360, 507, 533
BmsI GCATC 3 cut(s) 514, 631, 659
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 77, 531, 532
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 576
Bse1I ACTGG 1 cut(s) 726
BseBI CCWGG 3 cut(s) 360, 507, 533
BseDI CCNNGG 3 cut(s) 77, 531, 532
BseGI GGATG 5 cut(s) 229, 368, 529, 602, 705
BseLI CCNNNNNNNGG 2 cut(s) 359, 576
BseMII CTCAG 2 cut(s) 726, 756
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 540
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 2 cut(s) 221, 549
BslI CCNNNNNNNGG 2 cut(s) 359, 576
BsmAI GTCTC 2 cut(s) 37, 47
BsmFI GGGAC 2 cut(s) 221, 549
Bsp143I GATC 5 cut(s) 159, 334, 410, 670, 758
BspACI CCGC 1 cut(s) 540
BspCNI CTCAG 2 cut(s) 727, 755
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 258, 386
BspPI GGATC 3 cut(s) 418, 678, 766
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 3 cut(s) 77, 531, 532
BssMI GATC 5 cut(s) 159, 334, 410, 670, 758
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 3 cut(s) 360, 507, 533
Bst4CI ACNGT 2 cut(s) 31, 343
Bst6I CTCTTC 2 cut(s) 200, 742
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 3 cut(s) 405, 735, 742
BstF5I GGATG 5 cut(s) 229, 368, 529, 602, 705
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 5 cut(s) 162, 337, 413, 673, 761
BstMAI GTCTC 2 cut(s) 37, 47
BstMBI GATC 5 cut(s) 159, 334, 410, 670, 758
BstNI CCWGG 3 cut(s) 360, 507, 533
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 4 cut(s) 97, 358, 505, 531
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 1 cut(s) 417
BsuI GTATCC 1 cut(s) 559
BtsCI GGATG 5 cut(s) 229, 368, 529, 602, 705
BtsIMutI CAGTG 3 cut(s) 339, 643, 719
Cac8I GCNNGC 1 cut(s) 472
CaiI CAGNNNCTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 579
CseI GACGC 2 cut(s) 500, 546
Csp6I GTAC 2 cut(s) 154, 543
CviAII CATG 1 cut(s) 247
CviQI GTAC 2 cut(s) 154, 543
DdeI CTNAG 3 cut(s) 405, 735, 742
DpnI GATC 5 cut(s) 161, 336, 412, 672, 760
DpnII GATC 5 cut(s) 159, 334, 410, 670, 758
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 200, 742
EarI CTCTTC 2 cut(s) 200, 742
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 358, 505, 531
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 1 cut(s) 250
FaiI YATR 7 cut(s) 150, 248, 252, 293, 455, 680, 690
FaqI GGGAC 2 cut(s) 221, 549
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 5 cut(s) 236, 375, 536, 589, 712
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 609, 645
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 431
HapII CCGG 1 cut(s) 98
HgaI GACGC 2 cut(s) 500, 546
HhaI GCGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 3 cut(s) 458, 740, 752
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 348, 569, 677
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 163, 199, 744, 756
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 5 cut(s) 212, 280, 413, 439, 708
HpyCH4III ACNGT 2 cut(s) 31, 343
HpyCH4V TGCA 1 cut(s) 527
HpyF3I CTNAG 3 cut(s) 405, 735, 742
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 5 cut(s) 159, 334, 410, 670, 758
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 3 cut(s) 514, 631, 659
MaeI CTAG 2 cut(s) 609, 645
MaeIII GTNAC 1 cut(s) 557
MalI GATC 5 cut(s) 161, 336, 412, 672, 760
MboI GATC 5 cut(s) 159, 334, 410, 670, 758
MboII GAAGA 3 cut(s) 187, 723, 759
MfeI CAATTG 1 cut(s) 272
MluCI AATT 5 cut(s) 36, 63, 272, 510, 631
MlyI GAGTC 2 cut(s) 467, 734
MroXI GAANNNNTTC 1 cut(s) 751
MseI TTAA 4 cut(s) 177, 501, 519, 705
MslI CAYNNNNRTG 2 cut(s) 251, 361
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 4 cut(s) 99, 360, 507, 533
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 3 cut(s) 360, 507, 533
MvnI CGCG 1 cut(s) 540
NciI CCSGG 1 cut(s) 99
NdeII GATC 5 cut(s) 159, 334, 410, 670, 758
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 258, 386
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 1 cut(s) 250
PasI CCCWGGG 1 cut(s) 532
PciI ACATGT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 2 cut(s) 466, 734
PpsI GAGTC 2 cut(s) 466, 734
PscI ACATGT 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 358, 505, 531
PspGI CCWGG 3 cut(s) 358, 505, 531
PspN4I GGNNCC 2 cut(s) 258, 386
PspPI GGNCC 1 cut(s) 579
PsrI GAACNNNNNNTAC 2 cut(s) 377, 409
PstNI CAGNNNCTG 1 cut(s) 168
RsaI GTAC 2 cut(s) 155, 544
RsaNI GTAC 2 cut(s) 154, 543
RseI CAYNNNNRTG 2 cut(s) 251, 361
SaqAI TTAA 4 cut(s) 177, 501, 519, 705
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 5 cut(s) 159, 334, 410, 670, 758
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 2 cut(s) 467, 734
ScrFI CCNGG 4 cut(s) 99, 360, 507, 533
SfaNI GCATC 3 cut(s) 514, 631, 659
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 251, 361
Sse9I AATT 5 cut(s) 36, 63, 272, 510, 631
SsiI CCGC 1 cut(s) 540
SspMI CTAG 2 cut(s) 609, 645
StyD4I CCNGG 4 cut(s) 97, 358, 505, 531
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 31, 343
TaqI TCGA 1 cut(s) 14
TasI AATT 5 cut(s) 36, 63, 272, 510, 631
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 4 cut(s) 177, 501, 519, 705
Tru9I TTAA 4 cut(s) 177, 501, 519, 705
TscAI CASTG 3 cut(s) 346, 643, 726
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 432, 695, 705
TspRI CASTG 3 cut(s) 346, 643, 726
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 579
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 2 cut(s) 609, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.