Rroxscaffold_4G00280070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000182
Physical Location & Seq
Reverse (-)
2731866 .. 2733941
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280070.1

Sequence Viewer

Length: 585 bp
ATGGAGGGACTTATGGGCCAGGAATCGGTTTCTCGTCCTCCCACGCACGGGATGACTTCAGTTTGCTTTGCATTTGCGGATATGGTCGGTACCTACGGCACGAGGGCGGCGCAAATCATCACCTCTATTTCAAGAGGCTTACAAACTTGTTGGTTATCTAGGTTGGGCGAGATTCGCCGTTTGTTTTTGGCCACCGGATTTTTCCTTTTTGAAGATCACAATGATCGGAGCGCCTCGTCTTCCGACTCAAGCATGCAATATCCGAGATCCTCTCGCCTCGATTATTCCGGGGAGCTACCCATCGTCGTTGCTAATAGGAAACATAAGGAGGTTGTGATGGTTTCTTCGGACTCATCCCAAGAGGTGGATCAGTTCCTTGATGCTTTTGATCCCAAGTTTGGTGATATCGATACTCTCCTAAAAAATGATGCTAATTTTCCCCGTCCCCGGAACCGGTGGTGCCGGTCCGTGGCACCTACTCCCAAAAAGAGAAATAGGCAGATGTTGGAAATGATGGAAACAAGTGATAGTCGAGAATATAGGATCATTCTCCAATCAACTTTGTTGTCCCATGAGATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.04

Weight (kDa)

6.91

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 3 cut(s) 89, 459, 472
AccB7I CCANNNNNTGG 1 cut(s) 364
AciI CCGC 2 cut(s) 77, 107
AclWI GGATC 4 cut(s) 261, 375, 383, 551
AcoI YGGCCR 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 8 cut(s) 25, 47, 48, 364, 398, 447, 453, 469
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 2 cut(s) 132, 212
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AlwI GGATC 4 cut(s) 261, 375, 383, 551
AoxI GGCC 2 cut(s) 16, 189
AsiGI ACCGGT 1 cut(s) 453
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 112, 233
AspS9I GGNCC 2 cut(s) 16, 465
AsuC2I CCSGG 2 cut(s) 289, 448
AsuHPI GGTGA 2 cut(s) 112, 413
AvaII GGWCC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 3 cut(s) 89, 459, 472
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 3 cut(s) 308, 331, 508
BceAI ACGGC 2 cut(s) 112, 162
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 2 cut(s) 289, 448
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 20, 289, 448
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 2 cut(s) 16, 465
BmiI GGNNCC 4 cut(s) 91, 452, 461, 474
BmrFI CCNGG 3 cut(s) 20, 289, 448
BmsI GCATC 2 cut(s) 370, 418
BpiI GAAGAC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 2 cut(s) 289, 448
Bsa29I ATCGAT 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 288, 446, 468
BsaWI WCCGGW 2 cut(s) 194, 453
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 47, 48, 364, 398, 447, 453, 469
Bse118I RCCGGY 2 cut(s) 453, 462
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 3 cut(s) 288, 446, 468
BseGI GGATG 2 cut(s) 57, 353
BseLI CCNNNNNNNGG 8 cut(s) 25, 47, 48, 364, 398, 447, 453, 469
BshFI GGCC 2 cut(s) 18, 191
BshNI GGYRCC 3 cut(s) 89, 459, 472
BshTI ACCGGT 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 408
BsiSI CCGG 5 cut(s) 195, 288, 448, 454, 463
BslFI GGGAC 3 cut(s) 21, 429, 553
BslI CCNNNNNNNGG 8 cut(s) 25, 47, 48, 364, 398, 447, 453, 469
BsmFI GGGAC 3 cut(s) 21, 429, 553
BsnI GGCC 2 cut(s) 18, 191
Bsp143I GATC 6 cut(s) 214, 223, 266, 367, 388, 543
BspACI CCGC 2 cut(s) 77, 107
BspANI GGCC 2 cut(s) 18, 191
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 4 cut(s) 91, 452, 461, 474
BspPI GGATC 4 cut(s) 261, 375, 383, 551
BspT107I GGYRCC 3 cut(s) 89, 459, 472
BsrFI RCCGGY 2 cut(s) 453, 462
BssAI RCCGGY 2 cut(s) 453, 462
BssECI CCNNGG 3 cut(s) 288, 446, 468
BssMI GATC 6 cut(s) 214, 223, 266, 367, 388, 543
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 57, 353
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 112, 233
BstKTI GATC 6 cut(s) 217, 226, 269, 370, 391, 546
BstMBI GATC 6 cut(s) 214, 223, 266, 367, 388, 543
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 3 cut(s) 18, 287, 446
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 2 cut(s) 18, 191
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 57, 353
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 2 cut(s) 112, 233
Cfr10I RCCGGY 2 cut(s) 453, 462
Cfr13I GGNCC 2 cut(s) 16, 465
ClaI ATCGAT 1 cut(s) 408
CpoI CGGWCCG 1 cut(s) 465
Csp6I GTAC 1 cut(s) 90
CspAI ACCGGT 1 cut(s) 453
CspI CGGWCCG 1 cut(s) 465
CviAII CATG 2 cut(s) 253, 572
CviJI RGCY 4 cut(s) 18, 138, 191, 295
CviKI_1 RGCY 4 cut(s) 18, 138, 191, 295
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 582
DpnI GATC 6 cut(s) 216, 225, 268, 369, 390, 545
DpnII GATC 6 cut(s) 214, 223, 266, 367, 388, 543
EaeI YGGCCR 1 cut(s) 189
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 406
FaeI CATG 2 cut(s) 256, 575
FaiI YATR 6 cut(s) 14, 83, 254, 324, 540, 573
FaqI GGGAC 3 cut(s) 21, 429, 553
FatI CATG 2 cut(s) 252, 571
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 64, 340
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 111, 232
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 18, 191
HapII CCGG 5 cut(s) 195, 288, 448, 454, 463
HhaI GCGC 2 cut(s) 112, 233
Hin1II CATG 2 cut(s) 256, 575
Hin6I GCGC 2 cut(s) 110, 231
HinP1I GCGC 2 cut(s) 110, 231
HinfI GANTC 4 cut(s) 23, 172, 245, 350
HpaII CCGG 5 cut(s) 195, 288, 448, 454, 463
HphI GGTGA 2 cut(s) 112, 413
Hpy188I TCNGA 4 cut(s) 228, 244, 264, 349
Hpy188III TCNNGA 2 cut(s) 132, 533
Hpy99I CGWCG 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 71, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 582
Hsp92II CATG 2 cut(s) 256, 575
HspAI GCGC 2 cut(s) 110, 231
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 6 cut(s) 214, 223, 266, 367, 388, 543
LmnI GCTCC 2 cut(s) 228, 292
LpnPI CCDG 7 cut(s) 5, 32, 208, 301, 461, 467, 476
LweI GCATC 2 cut(s) 370, 418
MaeI CTAG 1 cut(s) 159
MalI GATC 6 cut(s) 216, 225, 268, 369, 390, 545
MboI GATC 6 cut(s) 214, 223, 266, 367, 388, 543
MboII GAAGA 3 cut(s) 224, 231, 336
MflI RGATCY 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 433
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 2 cut(s) 239, 344
MmeI TCCRAC 2 cut(s) 267, 486
MnlI CCTC 9 cut(s) 48, 96, 128, 133, 244, 280, 287, 322, 355
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 5 cut(s) 195, 288, 448, 454, 463
MspR9I CCNGG 3 cut(s) 20, 289, 448
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 2 cut(s) 289, 448
NdeII GATC 6 cut(s) 214, 223, 266, 367, 388, 543
NlaIII CATG 2 cut(s) 256, 575
NlaIV GGNNCC 4 cut(s) 91, 452, 461, 474
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 23, 172
PflMI CCANNNNNTGG 1 cut(s) 364
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 239, 344
PpsI GAGTC 2 cut(s) 239, 344
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 91, 452, 461, 474
PspPI GGNCC 2 cut(s) 16, 465
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
Rsr2I CGGWCCG 1 cut(s) 465
RsrII CGGWCCG 1 cut(s) 465
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 6 cut(s) 214, 223, 266, 367, 388, 543
Sau96I GGNCC 2 cut(s) 16, 465
SchI GAGTC 2 cut(s) 239, 344
ScrFI CCNGG 3 cut(s) 20, 289, 448
SetI ASST 7 cut(s) 95, 125, 164, 297, 333, 366, 478
SfaNI GCATC 2 cut(s) 370, 418
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SphI GCATGC 1 cut(s) 256
Sse9I AATT 1 cut(s) 433
SsiI CCGC 2 cut(s) 77, 107
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 18, 287, 446
TaqI TCGA 3 cut(s) 279, 408, 532
TasI AATT 1 cut(s) 433
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 23, 172
TspGWI ACGGA 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 465
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.