Rh1AG033900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Reverse (-)
5971700 .. 5972297
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG033900.1

Sequence Viewer

Length: 336 bp
ATGAGCGCAAGTTCCGAGAAACCAGTAGTTCGAGGAAATCTGATCGACGGCTTTCCATCTTCTCCCTCAGGACCTCTGAATGCTATTTATGGGTGCTTGACTGGTATAGGATTTACCAGTCTTCTCATACCCACTTCAAGTTATCCCCTTCCCAACTACACTATGGCCTTCAGCCCTAACGCAAAAGCCCAAGCTAGCTCCTCTAAAGCTAGAGCTCCAATGATTTTCAACCCCTACCTTCGAACAAACCAGAATCAGCCACCTTTTGTCACCAACATTGGTGGCACTAGGATCATTGTTGAAAGGGATCAAACCCAGGAGTTTGTTCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.94

Weight (kDa)

9.58

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 299, 315
AcuI CTGAAG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 138, 229, 302
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 194, 198, 209, 215
AluI AGCT 4 cut(s) 194, 198, 209, 215
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 299, 315
AoxI GGCC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 67
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 317
BfaI CTAG 3 cut(s) 195, 210, 288
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 317
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 315
Bse1I ACTGG 3 cut(s) 23, 106, 117
Bse21I CCTNAGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 23, 106, 117
BseRI GAGGAG 1 cut(s) 190
BshFI GGCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 42, 291, 307
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 299, 315
BspT104I TTCGAA 1 cut(s) 241
BsrI ACTGG 3 cut(s) 23, 106, 117
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 42, 291, 307
Bst2UI CCWGG 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 3 cut(s) 45, 294, 310
BstMBI GATC 3 cut(s) 42, 291, 307
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 113
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviJI RGCY 9 cut(s) 51, 167, 174, 188, 194, 198, 209, 215, 259
CviKI_1 RGCY 9 cut(s) 51, 167, 174, 188, 194, 198, 209, 215, 259
DdeI CTNAG 1 cut(s) 67
DpnI GATC 3 cut(s) 44, 293, 309
DpnII GATC 3 cut(s) 42, 291, 307
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 217
FaiI YATR 4 cut(s) 90, 107, 128, 164
FriOI GRGCYC 1 cut(s) 217
FspBI CTAG 3 cut(s) 195, 210, 288
GlaI GCGC 1 cut(s) 7
HaeIII GGCC 1 cut(s) 167
HhaI GCGC 1 cut(s) 8
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 253
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 16, 42, 78
Hpy188III TCNNGA 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 158, 178, 248
HpyF3I CTNAG 1 cut(s) 67
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 42, 291, 307
LmnI GCTCC 2 cut(s) 203, 220
LpnPI CCDG 7 cut(s) 36, 54, 87, 130, 263, 302, 329
MaeI CTAG 3 cut(s) 195, 210, 288
MaeIII GTNAC 1 cut(s) 268
MalI GATC 3 cut(s) 44, 293, 309
MboI GATC 3 cut(s) 42, 291, 307
MboII GAAGA 2 cut(s) 51, 113
MhlI GDGCHC 1 cut(s) 217
MnlI CCTC 4 cut(s) 26, 76, 84, 211
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 317
NdeII GATC 3 cut(s) 42, 291, 307
NheI GCTAGC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 241
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
SacI GAGCTC 1 cut(s) 217
Sau3AI GATC 3 cut(s) 42, 291, 307
Sau96I GGNCC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 76, 196, 200, 211, 217, 240, 265
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 71
SspMI CTAG 3 cut(s) 195, 210, 288
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 315
TaqI TCGA 3 cut(s) 31, 45, 241
TfiI GAWTC 1 cut(s) 253
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 3 cut(s) 195, 210, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.