Rmu_sc0003545.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003545.1
OG0000182
Physical Location & Seq
Forward (+)
6612 .. 9473
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003545.1_g000003.1.cds

Sequence Viewer

Length: 1818 bp
atgtcgtcaagggcaggtgaaaagtctgtgttgggaggtgtgcgatcttggttggagcgcggcggtgctcgtcatggtctagcggcaggtccaaccctgggagcgcggaagcagctggtgatccctggtgttgaagagaagggttccttattcctatcttcgttacctgccttatctcttcctatcacttgggtgtcatgggtttcgatttggagaacgaattggcctagatttagtgaagattccctgcatattttgtttgactgtggtgatttacacgaagacggcgctgtggttcttgtccaggccaatcctattgacggcgatctctttatgcagatcttgattcttgccttcctgtcatctctatttcttttgttcaagacgcccgtgcattcaaatatctatccttaccgttggatcatcattagtggtgttttctctgttcacttatcgttacgagttcccaatgagactgtcagcaaatccgatattgagataagtttttatccttatccttcttttcatcattacagttctgcctattttgcatttccgatattcgcttcgtcttctgctattgctgttattggcttaattgtttgggcgattgtttttgcttgtgttttgagttggtatcctatttcccagatgcagctcctatcttggctttatcataatttgtgcatgagtggccctatttatagttggttttccagaatttgtgacacacctcaatcttatctgcttcctctgctttgcacaatggctttcagtcccaatgcccaatctcaagctaatgcttcctcctctcaacgaccgttcccttttaaatcctattctctgtttccccgtgttactaccgacgccttcccggttaactttggtgatgaaaccttccatgtggataccaccccagcctatgtggatttgccttcaccgcccaccggtttctttgaacactacctaacccactgtgttgtcggcgagctctttggcaagaaacttccagctgaaattgtagtgaaccgctgtaacaaaatgtggtccaatttggaaggaaaattccaaatcaaccggctaataaagcattggtttgttatagagttcagtgttactgatgacatcgttctgatcctcgacaaaagaccttggtttattggtagtcgcatcttccatttacaaagatggttttacgggtttgatgttgcatcttcccttgttcaatgcaatttctttatggttgaaagatttgacaatgaccatccagtctatctggccgaaatggccaagtatgagaatattaagagtctgtttgcagaacatttttccttggtcttccctcaacctattcctgctccgacccctatagaaggtgataactctgttgatggggcatcgtggaaaatcgtgtctcgaaaagggaagggcaaaggttttacttatcctaaacatggggttatccccaataatcagaaagctatgttaaagcctggcaagtatttcaaggaggcagttgcaaataatggggctgggccctctggagtcccaaagaataaggaagtgctggttgtttctgatgattcgtcacaagaagtggatcaatacattaatgcagaggagcctcctcgccaaggcgagctggatatgctccttggtgaagctgctgggtttgaaacttttagcccaggtgtggggtttaccaccagcccgagtccaaagaaaaaaactagacaaatggtcgaaaacatggaaactagtactgataagtttgtggaaaatgtctctattttgaatattttaaatgagaatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

605

Amino Acids

67.81

Weight (kDa)

6.26

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 5
AasI GACNNNNNNGTC 1 cut(s) 1268
Acc36I ACCTGC 3 cut(s) 5, 77, 175
AccII CGCG 2 cut(s) 60, 106
AciI CCGC 6 cut(s) 60, 63, 83, 106, 941, 1030
AclWI GGATC 4 cut(s) 115, 428, 1129, 1608
AcoI YGGCCR 2 cut(s) 1278, 1287
AcsI RAATTY 2 cut(s) 720, 1064
AcyI GRCGYC 2 cut(s) 386, 867
AfaI GTAC 1 cut(s) 1762
AfiI CCNNNNNNNGG 8 cut(s) 98, 320, 947, 1373, 1454, 1634, 1693, 1694
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 9 cut(s) 134, 382, 399, 959, 1226, 1247, 1507, 1676, 1795
AhdI GACNNNNNGTC 1 cut(s) 1739
AhlI ACTAGT 1 cut(s) 1757
AjnI CCWGG 5 cut(s) 96, 124, 303, 1492, 1687
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 8 cut(s) 115, 658, 797, 991, 1013, 1481, 1642, 1664
AluI AGCT 8 cut(s) 115, 658, 797, 991, 1013, 1481, 1642, 1664
Alw21I GWGCWC 2 cut(s) 70, 993
Alw26I GTCTC 3 cut(s) 467, 1419, 1789
AlwI GGATC 4 cut(s) 115, 428, 1129, 1608
Ama87I CYCGRG 1 cut(s) 1711
AoxI GGCC 6 cut(s) 224, 306, 694, 1278, 1287, 1535
ApaI GGGCCC 1 cut(s) 1539
ApeKI GCWGC 3 cut(s) 112, 655, 1664
ApoI RAATTY 2 cut(s) 720, 1064
AseI ATTAAT 1 cut(s) 1611
AsiGI ACCGGT 1 cut(s) 947
AspLEI GCGC 3 cut(s) 60, 106, 290
AspS9I GGNCC 5 cut(s) 89, 695, 1047, 1535, 1536
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 7 cut(s) 29, 130, 281, 899, 930, 1388, 1670
AvaI CYCGRG 1 cut(s) 1711
AvaII GGWCC 2 cut(s) 89, 1047
BaeGI GKGCMC 1 cut(s) 1539
BalI TGGCCA 1 cut(s) 1289
BanII GRGCYC 2 cut(s) 993, 1539
BbsI GAAGAC 3 cut(s) 288, 564, 1330
Bbv12I GWGCWC 2 cut(s) 70, 993
BbvI GCAGC 3 cut(s) 124, 667, 1651
BccI CCATC 3 cut(s) 1182, 1272, 1385
BceAI ACGGC 2 cut(s) 301, 337
BciT130I CCWGG 5 cut(s) 98, 126, 305, 1494, 1689
BciVI GTATCC 2 cut(s) 648, 901
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 3 cut(s) 467, 1419, 1789
BcuI ACTAGT 1 cut(s) 1757
BfaI CTAG 4 cut(s) 80, 228, 1731, 1758
BfmI CTRYAG 1 cut(s) 1368
BfoI RGCGCY 1 cut(s) 291
BfuAI ACCTGC 3 cut(s) 5, 77, 175
BfuI GTATCC 2 cut(s) 648, 901
BglI GCCNNNNNGGC 1 cut(s) 1286
BglII AGATCT 1 cut(s) 339
BisI GCNGC 5 cut(s) 61, 84, 113, 656, 1665
BlsI GCNGC 5 cut(s) 62, 85, 114, 657, 1666
BmcAI AGTACT 1 cut(s) 1762
Bme1390I CCNGG 6 cut(s) 98, 126, 305, 875, 1494, 1689
Bme18I GGWCC 2 cut(s) 89, 1047
BmeRI GACNNNNNGTC 1 cut(s) 1739
BmeT110I CYCGRG 1 cut(s) 1711
BmgT120I GGNCC 5 cut(s) 89, 695, 1047, 1535, 1536
BmiI GGNNCC 3 cut(s) 145, 1537, 1623
BmrFI CCNGG 6 cut(s) 98, 126, 305, 875, 1494, 1689
BmsI GCATC 4 cut(s) 642, 1179, 1220, 1406
BpiI GAAGAC 3 cut(s) 288, 564, 1330
BpmI CTGGAG 1 cut(s) 1563
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 875
BsaHI GRCGYC 2 cut(s) 386, 867
BsaJI CCNNGG 8 cut(s) 96, 97, 124, 1151, 1332, 1633, 1654, 1687
BsaWI WCCGGW 1 cut(s) 947
Bsc4I CCNNNNNNNGG 8 cut(s) 98, 320, 947, 1373, 1454, 1634, 1693, 1694
Bse118I RCCGGY 2 cut(s) 947, 1077
Bse1I ACTGG 1 cut(s) 1268
BseBI CCWGG 5 cut(s) 98, 126, 305, 1494, 1689
BseDI CCNNGG 8 cut(s) 96, 97, 124, 1151, 1332, 1633, 1654, 1687
BseGI GGATG 1 cut(s) 1264
BseLI CCNNNNNNNGG 8 cut(s) 98, 320, 947, 1373, 1454, 1634, 1693, 1694
BseNI ACTGG 1 cut(s) 1268
BseRI GAGGAG 3 cut(s) 799, 1617, 1634
BseSI GKGCMC 1 cut(s) 1539
BseXI GCAGC 3 cut(s) 124, 667, 1651
BseYI CCCAGC 3 cut(s) 916, 1532, 1667
Bsh1236I CGCG 2 cut(s) 60, 106
Bsh1285I CGRYCG 1 cut(s) 821
BshFI GGCC 6 cut(s) 226, 308, 696, 1280, 1289, 1537
BshTI ACCGGT 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 821
BsiHKAI GWGCWC 2 cut(s) 70, 993
BsiHKCI CYCGRG 1 cut(s) 1711
BsiSI CCGG 3 cut(s) 875, 948, 1078
BslFI GGGAC 2 cut(s) 762, 1532
BslI CCNNNNNNNGG 8 cut(s) 98, 320, 947, 1373, 1454, 1634, 1693, 1694
BsmAI GTCTC 3 cut(s) 467, 1419, 1789
BsmFI GGGAC 2 cut(s) 762, 1532
BsmI GAATGC 2 cut(s) 394, 1816
BsnI GGCC 6 cut(s) 226, 308, 696, 1280, 1289, 1537
BsoBI CYCGRG 1 cut(s) 1711
Bsp120I GGGCCC 1 cut(s) 1535
Bsp1286I GDGCHC 3 cut(s) 70, 993, 1539
Bsp143I GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
BspACI CCGC 6 cut(s) 60, 63, 83, 106, 941, 1030
BspANI GGCC 6 cut(s) 226, 308, 696, 1280, 1289, 1537
BspFNI CGCG 2 cut(s) 60, 106
BspLI GGNNCC 3 cut(s) 145, 1537, 1623
BspMI ACCTGC 3 cut(s) 5, 77, 175
BspPI GGATC 4 cut(s) 115, 428, 1129, 1608
BsrFI RCCGGY 2 cut(s) 947, 1077
BsrI ACTGG 1 cut(s) 1268
BssAI RCCGGY 2 cut(s) 947, 1077
BssECI CCNNGG 8 cut(s) 96, 97, 124, 1151, 1332, 1633, 1654, 1687
BssMI GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
BssNI GRCGYC 2 cut(s) 386, 867
BssT1I CCWWGG 4 cut(s) 1151, 1332, 1633, 1654
Bst2UI CCWGG 5 cut(s) 98, 126, 305, 1494, 1689
Bst4CI ACNGT 6 cut(s) 266, 416, 478, 536, 822, 977
Bst6I CTCTTC 2 cut(s) 129, 183
BstACI GRCGYC 2 cut(s) 386, 867
BstC8I GCNNGC 2 cut(s) 989, 1640
BstDEI CTNAG 1 cut(s) 1815
BstENI CCTNNNNNAGG 2 cut(s) 1371, 1632
BstF5I GGATG 1 cut(s) 1264
BstFNI CGCG 2 cut(s) 60, 106
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 3 cut(s) 60, 106, 290
BstKTI GATC 7 cut(s) 47, 123, 328, 342, 423, 1137, 1603
BstMAI GTCTC 3 cut(s) 467, 1419, 1789
BstMBI GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
BstMCI CGRYCG 1 cut(s) 821
BstMWI GCNNNNNNNGC 8 cut(s) 112, 548, 693, 754, 940, 1087, 1286, 1648
BstNI CCWGG 5 cut(s) 98, 126, 305, 1494, 1689
BstSCI CCNGG 6 cut(s) 96, 124, 303, 873, 1492, 1687
BstSFI CTRYAG 1 cut(s) 1368
BstSLI GKGCMC 1 cut(s) 1539
BstUI CGCG 2 cut(s) 60, 106
BstV1I GCAGC 3 cut(s) 124, 667, 1651
BstV2I GAAGAC 3 cut(s) 288, 564, 1330
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuI GTATCC 2 cut(s) 648, 901
BsuRI GGCC 6 cut(s) 226, 308, 696, 1280, 1289, 1537
BtsCI GGATG 1 cut(s) 1264
BtsIMutI CAGTG 2 cut(s) 973, 1117
BveI ACCTGC 3 cut(s) 5, 77, 175
Cac8I GCNNGC 2 cut(s) 989, 1640
CfoI GCGC 3 cut(s) 60, 106, 290
Cfr10I RCCGGY 2 cut(s) 947, 1077
Cfr13I GGNCC 5 cut(s) 89, 695, 1047, 1535, 1536
CseI GACGC 2 cut(s) 394, 875
Csp6I GTAC 1 cut(s) 1761
CspAI ACCGGT 1 cut(s) 947
CviAII CATG 6 cut(s) 74, 198, 688, 902, 1454, 1750
CviQI GTAC 1 cut(s) 1761
DdeI CTNAG 1 cut(s) 1815
DpnI GATC 7 cut(s) 46, 122, 327, 341, 422, 1136, 1602
DpnII GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
DraI TTTAAA 2 cut(s) 832, 1803
DrdI GACNNNNNNGTC 1 cut(s) 1268
DriI GACNNNNNGTC 1 cut(s) 1739
DseDI GACNNNNNNGTC 1 cut(s) 1268
EaeI YGGCCR 2 cut(s) 1278, 1287
Eam1104I CTCTTC 2 cut(s) 129, 183
Eam1105I GACNNNNNGTC 1 cut(s) 1739
EarI CTCTTC 2 cut(s) 129, 183
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 4 cut(s) 1151, 1332, 1633, 1654
Eco24I GRGCYC 2 cut(s) 993, 1539
Eco47I GGWCC 2 cut(s) 89, 1047
Eco53kI GAGCTC 1 cut(s) 991
Eco88I CYCGRG 1 cut(s) 1711
EcoICRI GAGCTC 1 cut(s) 991
EcoNI CCTNNNNNAGG 2 cut(s) 1371, 1632
EcoO109I RGGNCCY 1 cut(s) 1536
EcoRII CCWGG 5 cut(s) 96, 124, 303, 1492, 1687
EcoT14I CCWWGG 4 cut(s) 1151, 1332, 1633, 1654
EcoT38I GRGCYC 2 cut(s) 993, 1539
ErhI CCWWGG 4 cut(s) 1151, 1332, 1633, 1654
FaeI CATG 6 cut(s) 77, 201, 691, 905, 1457, 1753
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 762, 1532
FatI CATG 6 cut(s) 73, 197, 687, 901, 1453, 1749
Fnu4HI GCNGC 5 cut(s) 61, 84, 113, 656, 1665
FokI GGATG 1 cut(s) 1251
FriOI GRGCYC 2 cut(s) 993, 1539
Fsp4HI GCNGC 5 cut(s) 61, 84, 113, 656, 1665
FspBI CTAG 4 cut(s) 80, 228, 1731, 1758
GlaI GCGC 3 cut(s) 59, 105, 289
GluI GCNGC 5 cut(s) 61, 84, 113, 656, 1665
GsaI CCCAGC 3 cut(s) 920, 1536, 1671
GsuI CTGGAG 1 cut(s) 1563
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 6 cut(s) 226, 308, 696, 1280, 1289, 1537
HapII CCGG 3 cut(s) 875, 948, 1078
HgaI GACGC 2 cut(s) 394, 875
HhaI GCGC 3 cut(s) 60, 106, 290
Hin1I GRCGYC 2 cut(s) 386, 867
Hin1II CATG 6 cut(s) 77, 201, 691, 905, 1457, 1753
Hin6I GCGC 3 cut(s) 58, 104, 288
HinP1I GCGC 3 cut(s) 58, 104, 288
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 6 cut(s) 242, 346, 1309, 1545, 1583, 1714
HpaI GTTAAC 1 cut(s) 880
HpaII CCGG 3 cut(s) 875, 948, 1078
HphI GGTGA 7 cut(s) 29, 130, 281, 899, 930, 1388, 1670
Hpy166II GTNNAC 4 cut(s) 448, 880, 1027, 1701
Hpy188I TCNGA 6 cut(s) 490, 558, 1134, 1362, 1476, 1579
Hpy188III TCNNGA 5 cut(s) 343, 382, 717, 1416, 1542
Hpy8I GTNNAC 4 cut(s) 448, 880, 1027, 1701
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 9 cut(s) 133, 364, 528, 880, 907, 945, 1052, 1367, 1420
HpyCH4III ACNGT 6 cut(s) 266, 416, 478, 536, 822, 977
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 548, 693, 754, 940, 1087, 1286, 1648
HpyF3I CTNAG 1 cut(s) 1815
Hsp92I GRCGYC 2 cut(s) 386, 867
Hsp92II CATG 6 cut(s) 77, 201, 691, 905, 1457, 1753
HspAI GCGC 3 cut(s) 58, 104, 288
KspAI GTTAAC 1 cut(s) 880
Kzo9I GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
LmnI GCTCC 6 cut(s) 55, 101, 663, 1363, 1621, 1656
Lsp1109I GCAGC 3 cut(s) 124, 667, 1651
LweI GCATC 4 cut(s) 642, 1179, 1220, 1406
MaeI CTAG 4 cut(s) 80, 228, 1731, 1758
MaeIII GTNAC 7 cut(s) 162, 456, 725, 856, 1034, 1114, 1587
MalI GATC 7 cut(s) 46, 122, 327, 341, 422, 1136, 1602
MboI GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
MboII GAAGA 9 cut(s) 146, 150, 170, 251, 293, 564, 1165, 1206, 1330
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 3 cut(s) 70, 993, 1539
MlsI TGGCCA 1 cut(s) 1289
MluCI AATT 8 cut(s) 220, 597, 679, 720, 1017, 1051, 1064, 1231
MluNI TGGCCA 1 cut(s) 1289
MlyI GAGTC 3 cut(s) 1318, 1554, 1723
MmeI TCCRAC 4 cut(s) 33, 116, 398, 1385
Mox20I TGGCCA 1 cut(s) 1289
MscI TGGCCA 1 cut(s) 1289
MseI TTAA 7 cut(s) 596, 831, 879, 1305, 1487, 1611, 1802
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 1289
MspA1I CMGCKG 3 cut(s) 115, 1013, 1032
MspI CCGG 3 cut(s) 875, 948, 1078
MspR9I CCNGG 6 cut(s) 98, 126, 305, 875, 1494, 1689
Mva1269I GAATGC 2 cut(s) 394, 1816
MvaI CCWGG 5 cut(s) 98, 126, 305, 1494, 1689
MvnI CGCG 2 cut(s) 60, 106
MwoI GCNNNNNNNGC 8 cut(s) 112, 548, 693, 754, 940, 1087, 1286, 1648
NciI CCSGG 1 cut(s) 875
NdeII GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
NlaIII CATG 6 cut(s) 77, 201, 691, 905, 1457, 1753
NlaIV GGNNCC 3 cut(s) 145, 1537, 1623
NmuCI GTSAC 2 cut(s) 725, 1587
OliI CACNNNNGTG 1 cut(s) 191
PaqCI CACCTGC 1 cut(s) 5
PasI CCCWGGG 1 cut(s) 97
PctI GAATGC 2 cut(s) 394, 1816
PfeI GAWTC 3 cut(s) 242, 346, 1583
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 5 cut(s) 62, 85, 114, 657, 1666
PleI GAGTC 3 cut(s) 1317, 1553, 1722
PpsI GAGTC 3 cut(s) 1317, 1553, 1722
PshBI ATTAAT 1 cut(s) 1611
Psp124BI GAGCTC 1 cut(s) 993
Psp6I CCWGG 5 cut(s) 96, 124, 303, 1492, 1687
PspFI CCCAGC 3 cut(s) 916, 1532, 1667
PspGI CCWGG 5 cut(s) 96, 124, 303, 1492, 1687
PspN4I GGNNCC 3 cut(s) 145, 1537, 1623
PspOMI GGGCCC 1 cut(s) 1535
PspPI GGNCC 5 cut(s) 89, 695, 1047, 1535, 1536
PsuI RGATCY 1 cut(s) 339
PvuII CAGCTG 2 cut(s) 115, 1013
RsaI GTAC 1 cut(s) 1762
RsaNI GTAC 1 cut(s) 1761
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 993
SaqAI TTAA 7 cut(s) 596, 831, 879, 1305, 1487, 1611, 1802
SatI GCNGC 5 cut(s) 61, 84, 113, 656, 1665
Sau3AI GATC 7 cut(s) 44, 120, 325, 339, 420, 1134, 1600
Sau96I GGNCC 5 cut(s) 89, 695, 1047, 1535, 1536
ScaI AGTACT 1 cut(s) 1762
SchI GAGTC 3 cut(s) 1318, 1554, 1723
ScrFI CCNGG 6 cut(s) 98, 126, 305, 875, 1494, 1689
SduI GDGCHC 3 cut(s) 70, 993, 1539
SfaNI GCATC 4 cut(s) 642, 1179, 1220, 1406
SfcI CTRYAG 1 cut(s) 1368
SfiI GGCCNNNNNGGCC 1 cut(s) 1286
SinI GGWCC 2 cut(s) 89, 1047
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 792
SmoI CTYRAG 1 cut(s) 792
SpeI ACTAGT 1 cut(s) 1757
Sse9I AATT 8 cut(s) 220, 597, 679, 720, 1017, 1051, 1064, 1231
SsiI CCGC 6 cut(s) 60, 63, 83, 106, 941, 1030
SspI AATATT 2 cut(s) 1303, 1798
SspMI CTAG 4 cut(s) 80, 228, 1731, 1758
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 6 cut(s) 96, 124, 303, 873, 1492, 1687
StyI CCWWGG 4 cut(s) 1151, 1332, 1633, 1654
TaaI ACNGT 6 cut(s) 266, 416, 478, 536, 822, 977
TaqI TCGA 4 cut(s) 206, 1140, 1417, 1743
TasI AATT 8 cut(s) 220, 597, 679, 720, 1017, 1051, 1064, 1231
TatI WGTACW 1 cut(s) 1760
TauI GCSGC 2 cut(s) 63, 86
TfiI GAWTC 3 cut(s) 242, 346, 1583
Tru1I TTAA 7 cut(s) 596, 831, 879, 1305, 1487, 1611, 1802
Tru9I TTAA 7 cut(s) 596, 831, 879, 1305, 1487, 1611, 1802
TscAI CASTG 2 cut(s) 980, 1117
TseFI GTSAC 2 cut(s) 725, 1587
TseI GCWGC 3 cut(s) 112, 655, 1664
Tsp45I GTSAC 2 cut(s) 725, 1587
TspDTI ATGAA 2 cut(s) 515, 906
TspRI CASTG 2 cut(s) 980, 1117
VpaK11BI GGWCC 2 cut(s) 89, 1047
VspI ATTAAT 1 cut(s) 1611
XagI CCTNNNNNAGG 2 cut(s) 1371, 1632
XapI RAATTY 2 cut(s) 720, 1064
XspI CTAG 4 cut(s) 80, 228, 1731, 1758
ZrmI AGTACT 1 cut(s) 1762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.