Rh1CG004600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000182
Physical Location & Seq
Reverse (-)
593445 .. 596514
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG004600.1

Sequence Viewer

Length: 510 bp
ATGTTTTTTTCTTTTACAAACACTAGAAATTTTTTCTTTATGAACGCTACATTTCGTGCTTGTTTTGTGATCCCTACTTGGGTTGTGATGATTTTCTATGCTCTTAGGCTCTGCATTCAAGTTTCTGGTAGCGGTTTTATTTATCCCCTAAGGTTTTTACTCACTATTTATAGCTTTCTCTCTAGCAATTCTTCTTCATCTCAGTACTCGTCATCTATCTTCCTCTTTTCCAGGTTATGTCTGCTTCTGTTTCTCCTTCTAATGGCGTTTAGTCCTAATGCTGAAGCTCAAGCCACTTCTTCTAGGAGTCCCTTTCCTTTTCGACCCTACTCCTTGTTTCCCAGAATTCAAGAAGACCAATCCTTCCCAGTTAACTATGGTAATGATTCCTTTCAAGTGGACAAAACTCCTACCAATATTGATATGCCCCCCCGCCCCCCCCCCCCCCCCCCCCTCCCGGCGCGCGGACGTCTGGCTTCTATGATCACTACTCCAACTATTGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.25

Weight (kDa)

9.72

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 472
AccII CGCG 2 cut(s) 463, 465
AciI CCGC 3 cut(s) 132, 433, 465
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 28, 345
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 469
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 79, 262, 457, 464
AgsI TTSAA 3 cut(s) 119, 350, 395
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 174, 287
AluI AGCT 2 cut(s) 174, 287
AlwI GGATC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 28, 345
AspLEI GCGC 2 cut(s) 463, 465
AsuC2I CCSGG 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 1 cut(s) 458
BfaI CTAG 3 cut(s) 24, 183, 303
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 232, 458
BmrFI CCNGG 2 cut(s) 232, 458
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 469
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 262, 457, 464
Bse1I ACTGG 1 cut(s) 368
Bse21I CCTNAGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 232
BseLI CCNNNNNNNGG 4 cut(s) 79, 262, 457, 464
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 368
BsePI GCGCGC 1 cut(s) 461
Bsh1236I CGCG 2 cut(s) 463, 465
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 4 cut(s) 79, 262, 457, 464
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 69, 483
BspACI CCGC 3 cut(s) 132, 433, 465
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 2 cut(s) 463, 465
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 368
BssHII GCGCGC 1 cut(s) 461
BssMI GATC 2 cut(s) 69, 483
BssNI GRCGYC 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 104, 149, 201
BstFNI CGCG 2 cut(s) 463, 465
BstHHI GCGC 2 cut(s) 463, 465
BstKTI GATC 2 cut(s) 72, 486
BstMBI GATC 2 cut(s) 69, 483
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 230, 456
BstUI CGCG 2 cut(s) 463, 465
BstV2I GAAGAC 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 2 cut(s) 463, 465
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 5 cut(s) 109, 174, 287, 293, 476
CviKI_1 RGCY 5 cut(s) 109, 174, 287, 293, 476
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 104, 149, 201
DpnI GATC 2 cut(s) 71, 485
DpnII GATC 2 cut(s) 69, 483
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 230
FaiI YATR 7 cut(s) 41, 99, 171, 238, 378, 425, 482
FaqI GGGAC 1 cut(s) 294
FauI CCCGC 1 cut(s) 440
FbaI TGATCA 1 cut(s) 483
FspBI CTAG 3 cut(s) 24, 183, 303
GlaI GCGC 2 cut(s) 462, 464
HapII CCGG 1 cut(s) 458
HhaI GCGC 2 cut(s) 463, 465
Hin1I GRCGYC 1 cut(s) 469
Hin6I GCGC 2 cut(s) 461, 463
HinP1I GCGC 2 cut(s) 461, 463
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 307, 386
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 373, 400
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 2 cut(s) 373, 400
HpyAV CCTTC 2 cut(s) 266, 373
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 3 cut(s) 104, 149, 201
HpySE526I ACGT 1 cut(s) 469
Hsp92I GRCGYC 1 cut(s) 469
HspAI GCGC 2 cut(s) 461, 463
Ksp22I TGATCA 1 cut(s) 483
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 69, 483
LpnPI CCDG 7 cut(s) 111, 217, 244, 355, 381, 458, 471
MaeI CTAG 3 cut(s) 24, 183, 303
MaeII ACGT 1 cut(s) 469
MalI GATC 2 cut(s) 71, 485
MboI GATC 2 cut(s) 69, 483
MboII GAAGA 5 cut(s) 183, 186, 211, 291, 365
MluCI AATT 3 cut(s) 28, 187, 345
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 233, 464
MseI TTAA 1 cut(s) 372
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 2 cut(s) 232, 458
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 463, 465
NciI CCSGG 1 cut(s) 458
NdeII GATC 2 cut(s) 69, 483
PauI GCGCGC 1 cut(s) 461
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PteI GCGCGC 1 cut(s) 461
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 2 cut(s) 69, 483
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 232, 458
SetI ASST 5 cut(s) 155, 176, 236, 289, 472
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 3 cut(s) 28, 187, 345
SsiI CCGC 3 cut(s) 132, 433, 465
SspI AATATT 1 cut(s) 418
SspMI CTAG 3 cut(s) 24, 183, 303
StyD4I CCNGG 2 cut(s) 230, 456
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 28, 187, 345
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TspDTI ATGAA 2 cut(s) 56, 186
XapI RAATTY 2 cut(s) 28, 345
XspI CTAG 3 cut(s) 24, 183, 303
ZraI GACGTC 1 cut(s) 470
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.