Rmu_co8500999.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8500999.1
OG0000182
Physical Location & Seq
Reverse (-)
518 .. 2743
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8500999.1_g000001.1.cds

Sequence Viewer

Length: 1956 bp
atgggagtgctaagggaacgcgcctcacgcgccttccaaattagggatctagggcttcgttctactaccttcttgatctccttcgtaattattttctgggttgcctgggttgtccgatggagggatctttggcctggatatgatcagctattcctttggagatacacaactggattacctcgggtttattcacctttgggttatttttgccacgattggagcttgggaaatcaaattgacggcgaattcaatcatgacatccctagagatgttatttcggcttctctgctcattttcgaggcctggaaatttgcaaatacacaaatctaccgttggatcactctggcctactcgtctagtgccacaagtctagctgctctcctggttcacgcctgtcggacctgcaattggaatcgtttcttttgccagggagcctctcttatcctctcttatctcattgattttcagtttccatttgcagttgcttttcctacttgcattttcattggcacaatggcctttagtcctaatgcccatgcccatgcccatgttcagattcccgctaggacttcttttcctgctcgaccgtactacccctttcctaggaactctaacattaatgaacccataccagttatgattggggacaacacgatcaacatcgatcgttttgctgcccatgtagaattgcctccaccacctgcagactttatctctcatttctctaggctttgccttgttggtaaagtgtttggtacgtttgtgccggctgaagctgtgatcaataggtttcatgattgttggaaccagctacgaggctctgttactattaggcaactcatcaacagctggttcagctttgagttcactgaggaagaggatgttgagtttgttctcaacaatcgaccctggtatgtgagaagcagacttttccgccttcagaggtggactcatgattttgatgcaacgatttctgtcattgacagtatcattgtttgggtccggttgcctaacttacctctcccccattggaatactaagtctttggagcacattgtccagcctttggggcgctttattttggccgatgagaacactcttactgccaagaaatgtatctttgcgcgtgttctggtggaactggacctccattaccctcttaagagaactgtcattgctcatagtactgacggttttccttccactacgattatggtctcttatgaagttgtgtttgaagtttgctttaggtgtggccgctatagggaaaggtttcataaatgccctgatcagatcctgaaggagaacttccttatggtcgagcgtcttgaggatgaacaagctgtctatcctctggaaatggcaaagcatgagttcattaagcccctgttgtcaaatgacatctcgattgtctttcctcaacctatgtttaattatcatgaccaaggcaatgtgaattttgccaaccgtgctgccacccattctggtgaggaggctaccgataactcttggaagattgtggctagaaaaggtaaagggaagggtaacttctatcaaaagcaaggttctggtaatctgaggtttatgcctaagtccagcagtgttgttcctggtgttagctttagggatgctgctgctggttttggtgtgattggtgataaggtaggattggagaagaaaaaggaggttgttgtcctttctgatggttcctctcaggaggttgatcagtttatggatgcttttgaacctccaaagttgggggatattgaggatttgctgcgaagtgatcctgcaattaacttgaatggtgcactggtggggactagtggaaccaaggctgtggttccagctcctaaaaaaagatctcgccagatggtggaattgatggaaacaagccaggatcaaactgaaggaaccaaatctaactatctgaactgtgttgatgagaatgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

651

Amino Acids

74.32

Weight (kDa)

7.01

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 709
Acc36I ACCTGC 2 cut(s) 410, 709
AccB7I CCANNNNNTGG 2 cut(s) 1066, 1876
AccII CGCG 3 cut(s) 21, 30, 1126
AciI CCGC 3 cut(s) 561, 934, 1258
AclWI GGATC 6 cut(s) 54, 132, 344, 1288, 1781, 1908
AcoI YGGCCR 2 cut(s) 1083, 1255
AcsI RAATTY 3 cut(s) 245, 308, 1456
AcuI CTGAAG 4 cut(s) 792, 923, 1319, 1929
AfaI GTAC 3 cut(s) 590, 757, 1186
AfiI CCNNNNNNNGG 8 cut(s) 43, 121, 408, 603, 1066, 1264, 1757, 1876
AflII CTTAAG 1 cut(s) 1160
AgsI TTSAA 4 cut(s) 250, 1238, 1745, 1804
AhlI ACTAGT 1 cut(s) 1823
AjnI CCWGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
AloI GAACNNNNNNTCC 2 cut(s) 1131, 1163
Alw21I GWGCWC 2 cut(s) 1053, 1813
Alw26I GTCTC 1 cut(s) 1222
Alw44I GTGCAC 1 cut(s) 1809
AlwI GGATC 6 cut(s) 54, 132, 344, 1288, 1781, 1908
AlwNI CAGNNNCTG 1 cut(s) 1297
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 6 cut(s) 131, 300, 345, 516, 1083, 1255
ApaLI GTGCAC 1 cut(s) 1809
ApeKI GCWGC 6 cut(s) 374, 674, 1472, 1631, 1634, 1777
ApoI RAATTY 3 cut(s) 245, 308, 1456
AseI ATTAAT 1 cut(s) 618
Asp700I GAANNNNTTC 2 cut(s) 416, 1272
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 4 cut(s) 23, 32, 1074, 1126
AspS9I GGNCC 3 cut(s) 399, 1000, 1144
AsuHPI GGTGA 3 cut(s) 183, 1499, 1667
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 3 cut(s) 399, 1000, 1144
AvrII CCTAGG 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 1813
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
Bbv12I GWGCWC 2 cut(s) 1053, 1813
BbvI GCAGC 6 cut(s) 361, 661, 1459, 1618, 1621, 1764
BccI CCATC 4 cut(s) 111, 1697, 1867, 1879
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
BclI TGATCA 4 cut(s) 142, 780, 1288, 1723
BcoDI GTCTC 1 cut(s) 1222
BcuI ACTAGT 1 cut(s) 1823
BfaI CTAG 9 cut(s) 50, 264, 357, 371, 564, 603, 726, 1524, 1824
BfmI CTRYAG 2 cut(s) 702, 1261
BfoI RGCGCY 1 cut(s) 1075
BfrI CTTAAG 1 cut(s) 1160
BfuAI ACCTGC 2 cut(s) 410, 709
BglI GCCNNNNNGGC 1 cut(s) 1069
BglII AGATCT 1 cut(s) 1862
BisI GCNGC 7 cut(s) 375, 675, 1258, 1473, 1632, 1635, 1778
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 7 cut(s) 376, 676, 1259, 1474, 1633, 1636, 1779
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
Bme18I GGWCC 3 cut(s) 399, 1000, 1144
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 399, 1000, 1144
BmiI GGNNCC 7 cut(s) 433, 806, 1001, 1708, 1831, 1845, 1915
BmrFI CCNGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
BmsI GCATC 3 cut(s) 952, 1618, 1726
BplI GAGNNNNNCTC 2 cut(s) 934, 966
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 1349
Bsa29I ATCGAT 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 659
BsaI GGTCTC 1 cut(s) 1222
BsaJI CCNNGG 7 cut(s) 105, 179, 427, 602, 908, 1444, 1833
BsaWI WCCGGW 1 cut(s) 1002
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 8 cut(s) 43, 121, 408, 603, 1066, 1264, 1757, 1876
Bse118I RCCGGY 1 cut(s) 766
Bse1I ACTGG 4 cut(s) 175, 632, 1146, 1818
Bse3DI GCAATG 2 cut(s) 1173, 1456
Bse8I GATNNNNATC 1 cut(s) 659
BseBI CCWGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 7 cut(s) 105, 179, 427, 602, 908, 1444, 1833
BseGI GGATG 5 cut(s) 258, 886, 1339, 1633, 1741
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 8 cut(s) 43, 121, 408, 603, 1066, 1264, 1757, 1876
BseMI GCAATG 2 cut(s) 1173, 1456
BseMII CTCAG 3 cut(s) 861, 1568, 1727
BseNI ACTGG 4 cut(s) 175, 632, 1146, 1818
BseRI GAGGAG 1 cut(s) 1505
BseSI GKGCMC 1 cut(s) 1813
BseXI GCAGC 6 cut(s) 361, 661, 1459, 1618, 1621, 1764
Bsh1236I CGCG 3 cut(s) 21, 30, 1126
Bsh1285I CGRYCG 2 cut(s) 587, 667
BshFI GGCC 6 cut(s) 133, 302, 347, 518, 1085, 1257
BshVI ATCGAT 1 cut(s) 663
BsiEI CGRYCG 2 cut(s) 587, 667
BsiHKAI GWGCWC 2 cut(s) 1053, 1813
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 767, 1003
BslFI GGGAC 2 cut(s) 659, 1834
BslI CCNNNNNNNGG 8 cut(s) 43, 121, 408, 603, 1066, 1264, 1757, 1876
BsmAI GTCTC 1 cut(s) 1222
BsmFI GGGAC 2 cut(s) 659, 1834
BsnI GGCC 6 cut(s) 133, 302, 347, 518, 1085, 1257
Bso31I GGTCTC 1 cut(s) 1222
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 1053, 1813
BspACI CCGC 3 cut(s) 561, 934, 1258
BspANI GGCC 6 cut(s) 133, 302, 347, 518, 1085, 1257
BspCNI CTCAG 3 cut(s) 862, 1569, 1726
BspDI ATCGAT 1 cut(s) 663
BspFNI CGCG 3 cut(s) 21, 30, 1126
BspHI TCATGA 4 cut(s) 253, 793, 952, 1438
BspLI GGNNCC 7 cut(s) 433, 806, 1001, 1708, 1831, 1845, 1915
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 2 cut(s) 410, 709
BspPI GGATC 6 cut(s) 54, 132, 344, 1288, 1781, 1908
BspTI CTTAAG 1 cut(s) 1160
BspTNI GGTCTC 1 cut(s) 1222
BsrDI GCAATG 2 cut(s) 1173, 1456
BsrFI RCCGGY 1 cut(s) 766
BsrI ACTGG 4 cut(s) 175, 632, 1146, 1818
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 7 cut(s) 105, 179, 427, 602, 908, 1444, 1833
BssT1I CCWWGG 3 cut(s) 602, 1444, 1833
Bst2UI CCWGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
Bst4CI ACNGT 7 cut(s) 332, 588, 986, 1171, 1193, 1469, 1937
Bst6I CTCTTC 1 cut(s) 870
BstAFI CTTAAG 1 cut(s) 1160
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 6 cut(s) 11, 870, 1038, 1577, 1590, 1713
BstENI CCTNNNNNAGG 1 cut(s) 601
BstF5I GGATG 5 cut(s) 258, 886, 1339, 1633, 1741
BstFNI CGCG 3 cut(s) 21, 30, 1126
BstH2I RGCGCY 1 cut(s) 1075
BstHHI GCGC 4 cut(s) 23, 32, 1074, 1126
BstMAI GTCTC 1 cut(s) 1222
BstMCI CGRYCG 2 cut(s) 587, 667
BstMWI GCNNNNNNNGC 5 cut(s) 27, 29, 855, 1069, 1469
BstNI CCWGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
BstSCI CCNGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
BstSFI CTRYAG 2 cut(s) 702, 1261
BstSLI GKGCMC 1 cut(s) 1813
BstUI CGCG 3 cut(s) 21, 30, 1126
BstV1I GCAGC 6 cut(s) 361, 661, 1459, 1618, 1621, 1764
BstX2I RGATCY 4 cut(s) 46, 124, 1293, 1862
BstXI CCANNNNNNTGG 1 cut(s) 1840
BstYI RGATCY 4 cut(s) 46, 124, 1293, 1862
Bsu15I ATCGAT 1 cut(s) 663
BsuRI GGCC 6 cut(s) 133, 302, 347, 518, 1085, 1257
BsuTUI ATCGAT 1 cut(s) 663
BtsCI GGATG 5 cut(s) 258, 886, 1339, 1633, 1741
BtsI GCAGTG 1 cut(s) 1606
BtsIMutI CAGTG 3 cut(s) 867, 1606, 1811
BveI ACCTGC 2 cut(s) 410, 709
Cac8I GCNNGC 1 cut(s) 768
CaiI CAGNNNCTG 1 cut(s) 1297
CciI TCATGA 4 cut(s) 253, 793, 952, 1438
CfoI GCGC 4 cut(s) 23, 32, 1074, 1126
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 3 cut(s) 399, 1000, 1144
ClaI ATCGAT 1 cut(s) 663
CseI GACGC 1 cut(s) 1313
Csp6I GTAC 3 cut(s) 589, 756, 1185
CviAII CATG 9 cut(s) 254, 536, 542, 548, 680, 794, 953, 1370, 1439
CviQI GTAC 3 cut(s) 589, 756, 1185
DdeI CTNAG 6 cut(s) 11, 870, 1038, 1577, 1590, 1713
EaeI YGGCCR 2 cut(s) 1083, 1255
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
EciI GGCGGA 1 cut(s) 923
Eco130I CCWWGG 3 cut(s) 602, 1444, 1833
Eco147I AGGCCT 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 399, 1000, 1144
Eco57I CTGAAG 4 cut(s) 792, 923, 1319, 1929
Eco88I CYCGRG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
EcoT14I CCWWGG 3 cut(s) 602, 1444, 1833
ErhI CCWWGG 3 cut(s) 602, 1444, 1833
FaeI CATG 9 cut(s) 257, 539, 545, 551, 683, 797, 956, 1373, 1442
FalI AAGNNNNNCTT 4 cut(s) 1292, 1324, 1532, 1564
FaqI GGGAC 2 cut(s) 659, 1834
FatI CATG 9 cut(s) 253, 535, 541, 547, 679, 793, 952, 1369, 1438
FauI CCCGC 1 cut(s) 568
FbaI TGATCA 4 cut(s) 142, 780, 1288, 1723
Fnu4HI GCNGC 7 cut(s) 375, 675, 1258, 1473, 1632, 1635, 1778
FokI GGATG 5 cut(s) 245, 893, 1346, 1640, 1748
Fsp4HI GCNGC 7 cut(s) 375, 675, 1258, 1473, 1632, 1635, 1778
FspBI CTAG 9 cut(s) 50, 264, 357, 371, 564, 603, 726, 1524, 1824
GlaI GCGC 4 cut(s) 22, 31, 1073, 1125
GluI GCNGC 7 cut(s) 375, 675, 1258, 1473, 1632, 1635, 1778
HaeII RGCGCY 1 cut(s) 1075
HaeIII GGCC 6 cut(s) 133, 302, 347, 518, 1085, 1257
HapII CCGG 2 cut(s) 767, 1003
HgaI GACGC 1 cut(s) 1313
HhaI GCGC 4 cut(s) 23, 32, 1074, 1126
Hin1II CATG 9 cut(s) 257, 539, 545, 551, 683, 797, 956, 1373, 1442
Hin6I GCGC 4 cut(s) 21, 30, 1072, 1124
HinP1I GCGC 4 cut(s) 21, 30, 1072, 1124
HinfI GANTC 3 cut(s) 412, 556, 949
HpaII CCGG 2 cut(s) 767, 1003
HphI GGTGA 3 cut(s) 183, 1499, 1667
Hpy166II GTNNAC 4 cut(s) 388, 867, 948, 1811
Hpy188I TCNGA 8 cut(s) 116, 399, 555, 942, 1293, 1578, 1702, 1932
Hpy8I GTNNAC 4 cut(s) 388, 867, 948, 1811
HpyAV CCTTC 8 cut(s) 43, 79, 91, 947, 1209, 1294, 1534, 1904
HpyCH4III ACNGT 7 cut(s) 332, 588, 986, 1171, 1193, 1469, 1937
HpyCH4IV ACGT 1 cut(s) 758
HpyCH4V TGCA 8 cut(s) 314, 405, 479, 498, 704, 965, 1793, 1811
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 29, 855, 1069, 1469
HpyF3I CTNAG 6 cut(s) 11, 870, 1038, 1577, 1590, 1713
HpySE526I ACGT 1 cut(s) 758
Hsp92II CATG 9 cut(s) 257, 539, 545, 551, 683, 797, 956, 1373, 1442
HspAI GCGC 4 cut(s) 21, 30, 1072, 1124
KroI GCCGGC 1 cut(s) 766
KroNI GCCGGC 1 cut(s) 768
Ksp22I TGATCA 4 cut(s) 142, 780, 1288, 1723
LmnI GCTCC 4 cut(s) 219, 431, 1048, 1855
Lsp1109I GCAGC 6 cut(s) 361, 661, 1459, 1618, 1621, 1764
LweI GCATC 3 cut(s) 952, 1618, 1726
MaeI CTAG 9 cut(s) 50, 264, 357, 371, 564, 603, 726, 1524, 1824
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 2 cut(s) 823, 1544
MboII GAAGA 3 cut(s) 887, 1525, 1687
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 4 cut(s) 46, 124, 1293, 1862
MhlI GDGCHC 2 cut(s) 1053, 1813
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 3 cut(s) 314, 377, 782
MroNI GCCGGC 1 cut(s) 766
MroXI GAANNNNTTC 2 cut(s) 416, 1272
MseI TTAA 5 cut(s) 618, 1161, 1380, 1431, 1797
MslI CAYNNNNRTG 3 cut(s) 540, 546, 1485
MspA1I CMGCKG 1 cut(s) 849
MspCI CTTAAG 1 cut(s) 1160
MspI CCGG 2 cut(s) 767, 1003
MspR9I CCNGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
MvnI CGCG 3 cut(s) 21, 30, 1126
MwoI GCNNNNNNNGC 5 cut(s) 27, 29, 855, 1069, 1469
NaeI GCCGGC 1 cut(s) 768
NgoMIV GCCGGC 1 cut(s) 766
NlaIII CATG 9 cut(s) 257, 539, 545, 551, 683, 797, 956, 1373, 1442
NlaIV GGNNCC 7 cut(s) 433, 806, 1001, 1708, 1831, 1845, 1915
PagI TCATGA 4 cut(s) 253, 793, 952, 1438
PaqCI CACCTGC 1 cut(s) 709
PceI AGGCCT 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 768
PdmI GAANNNNTTC 2 cut(s) 416, 1272
PfeI GAWTC 2 cut(s) 412, 556
PflMI CCANNNNNTGG 2 cut(s) 1066, 1876
PkrI GCNGC 7 cut(s) 376, 676, 1259, 1474, 1633, 1636, 1779
Ple19I CGATCG 1 cut(s) 667
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
PspGI CCWGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
PspN4I GGNNCC 7 cut(s) 433, 806, 1001, 1708, 1831, 1845, 1915
PspPI GGNCC 3 cut(s) 399, 1000, 1144
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 1297
PsuI RGATCY 4 cut(s) 46, 124, 1293, 1862
PvuI CGATCG 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 849
RsaI GTAC 3 cut(s) 590, 757, 1186
RsaNI GTAC 3 cut(s) 589, 756, 1185
RseI CAYNNNNRTG 3 cut(s) 540, 546, 1485
SaqAI TTAA 5 cut(s) 618, 1161, 1380, 1431, 1797
SatI GCNGC 7 cut(s) 375, 675, 1258, 1473, 1632, 1635, 1778
Sau96I GGNCC 3 cut(s) 399, 1000, 1144
ScaI AGTACT 1 cut(s) 1186
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 8 cut(s) 106, 135, 304, 383, 428, 910, 1611, 1898
SduI GDGCHC 2 cut(s) 1053, 1813
SfaNI GCATC 3 cut(s) 952, 1618, 1726
SfcI CTRYAG 2 cut(s) 702, 1261
SinI GGWCC 3 cut(s) 399, 1000, 1144
SmiMI CAYNNNNRTG 3 cut(s) 540, 546, 1485
SmlI CTYRAG 2 cut(s) 1160, 1328
SmoI CTYRAG 2 cut(s) 1160, 1328
SpeI ACTAGT 1 cut(s) 1823
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 3 cut(s) 561, 934, 1258
SspMI CTAG 9 cut(s) 50, 264, 357, 371, 564, 603, 726, 1524, 1824
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 8 cut(s) 104, 133, 302, 381, 426, 908, 1609, 1896
StyI CCWWGG 3 cut(s) 602, 1444, 1833
TaaI ACNGT 7 cut(s) 332, 588, 986, 1171, 1193, 1469, 1937
TaiI ACGT 1 cut(s) 761
TaqI TCGA 6 cut(s) 297, 583, 663, 904, 1320, 1406
TatI WGTACW 1 cut(s) 1184
TauI GCSGC 1 cut(s) 1260
TfiI GAWTC 2 cut(s) 412, 556
Tru1I TTAA 5 cut(s) 618, 1161, 1380, 1431, 1797
Tru9I TTAA 5 cut(s) 618, 1161, 1380, 1431, 1797
TscAI CASTG 3 cut(s) 874, 1606, 1818
TseI GCWGC 6 cut(s) 374, 674, 1472, 1631, 1634, 1777
TspDTI ATGAA 7 cut(s) 493, 636, 782, 1239, 1265, 1350, 1366
TspRI CASTG 3 cut(s) 874, 1606, 1818
Van91I CCANNNNNTGG 2 cut(s) 1066, 1876
Vha464I CTTAAG 1 cut(s) 1160
VneI GTGCAC 1 cut(s) 1809
VpaK11BI GGWCC 3 cut(s) 399, 1000, 1144
VspI ATTAAT 1 cut(s) 618
XagI CCTNNNNNAGG 1 cut(s) 601
XapI RAATTY 3 cut(s) 245, 308, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XmaJI CCTAGG 1 cut(s) 602
XmnI GAANNNNTTC 2 cut(s) 416, 1272
XspI CTAG 9 cut(s) 50, 264, 357, 371, 564, 603, 726, 1524, 1824
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.