Rmu_sc0005697.1_g000008

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005697.1
Physical Location & Seq
Reverse (-)
24966 .. 26342
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005697.1_g000008.1.cds

Sequence Viewer

Length: 1329 bp
atggctttcagccccaacgcccaagcccaggcaaatgcttcttcctctcgacgaccgtttccgtttaaaccttactctctatttccccgtgttcctatggataactccttccctgttaactttggtgatgaaactttccatattgatcataccccagcctatgtggatttgtcgtcaccgcccattggtttttttgaacactacttaacccaatgtgtagttggcaagctctttggcaagaaactcccaactgaagttgtggtcaaccgctgtaaggaaatgtggtctaacctggaaggcaacttccagatcaacaggctgataaatcattggtttgttatagagttcagtgatgctgatgacattgatcgggtcctcaacaacaggccttggtttattggtagtcgtatcttccatttacaaaggtggtattatgggtttgatgcggcatcttcccgcattgaaaaacttattgtctgggtaaggctaccaaatcttcccctcccttactggaataaggagtccttaacttccctggctcaacacattggtcgttatgttggtgctgatgaaaataccttactagttaagaagtgcatgtttgctagggtcctgatagagattgatttgtgtttccctctaaaacgcacggttcttgccaacaacaaattaggtaacccgatccacattctggtctcttatgaggttctctatgaagtttgctttagatgtggtcattacattcaacgaaaccaagttcattcctgtccttttaagctgttcaatgataatttctttttggttgagcgatttgacaatgaccatccggtttatccggctgaaatggccaagtatgagaatgttaagagtctatttgcagaacacttttccttggtctttcctcaacctattcctgctccaacccctttagaaggtgataaccctgctgatggagcatcgtggaaaatagtgtctcgaaaaggaaagggtaaagcctttacttacccaaaacaaggggctatccctaataatcaaaaagctttgttaaagccgggtaagtctttcaaggaggcagttggtactgatggggctgcgccctcagcggaagtggatcaatacatcgatgcggaggagcctcctcgccagggtgagctggatatgttcttaggtgatgttgctgggtttgaagttttcaacccagctgcggggttttccaccagtccaagtccaaagaaaagatctagacagatggtcgaaaacatggaaactagtactgatcagcttgctgacaatgcctcccttctgaatgttttaaatgagaatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

50.11

Weight (kDa)

6.43

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 691
AciI CCGC 7 cut(s) 179, 268, 446, 457, 1103, 1127, 1205
AclWI GGATC 2 cut(s) 676, 1119
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 1081, 1273
AgsI TTSAA 7 cut(s) 197, 464, 746, 784, 1066, 1187, 1195
AhdI GACNNNNNGTC 1 cut(s) 1250
AhlI ACTAGT 2 cut(s) 583, 1268
AjnI CCWGG 4 cut(s) 27, 291, 534, 1143
AluBI AGCT 6 cut(s) 229, 778, 1040, 1153, 1202, 1282
AluI AGCT 6 cut(s) 229, 778, 1040, 1153, 1202, 1282
Alw26I GTCTC 2 cut(s) 700, 978
AlwI GGATC 2 cut(s) 676, 1119
AoxI GGCC 2 cut(s) 386, 846
ApeKI GCWGC 2 cut(s) 1091, 1202
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 373, 610
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 5 cut(s) 137, 168, 947, 1160, 1181
AvaII GGWCC 2 cut(s) 373, 610
BalI TGGCCA 1 cut(s) 848
BbvCI CCTCAGC 1 cut(s) 1099
BbvI GCAGC 2 cut(s) 1078, 1189
BccI CCATC 4 cut(s) 831, 944, 1079, 1243
BciT130I CCWGG 4 cut(s) 29, 293, 536, 1145
BclI TGATCA 2 cut(s) 145, 1276
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 2 cut(s) 700, 978
BcuI ACTAGT 2 cut(s) 583, 1268
BfaI CTAG 4 cut(s) 584, 606, 1242, 1269
BglII AGATCT 1 cut(s) 1238
BisI GCNGC 3 cut(s) 447, 1092, 1203
BlsI GCNGC 3 cut(s) 448, 1093, 1204
BmcAI AGTACT 1 cut(s) 1273
Bme1390I CCNGG 5 cut(s) 29, 293, 536, 1053, 1145
Bme18I GGWCC 2 cut(s) 373, 610
BmeRI GACNNNNNGTC 1 cut(s) 1250
BmgT120I GGNCC 2 cut(s) 373, 610
BmiI GGNNCC 3 cut(s) 374, 611, 1134
BmrFI CCNGG 5 cut(s) 29, 293, 536, 1053, 1145
BmsI GCATC 5 cut(s) 343, 433, 458, 965, 1114
Bpu10I CCTNAGC 1 cut(s) 1099
BpuMI CCSGG 1 cut(s) 1053
Bsa29I ATCGAT 1 cut(s) 1122
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 5 cut(s) 27, 389, 534, 891, 1144
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 1280, 1310
Bse1I ACTGG 2 cut(s) 515, 1218
BseBI CCWGG 4 cut(s) 29, 293, 536, 1145
BseCI ATCGAT 1 cut(s) 1122
BseDI CCNNGG 5 cut(s) 27, 389, 534, 891, 1144
BseGI GGATG 1 cut(s) 823
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 2 cut(s) 515, 1218
BseRI GAGGAG 2 cut(s) 1128, 1145
BseXI GCAGC 2 cut(s) 1078, 1189
BseYI CCCAGC 3 cut(s) 154, 1178, 1198
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 388, 848
BshVI ATCGAT 1 cut(s) 1122
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 827, 836, 1052
BsmAI GTCTC 2 cut(s) 700, 978
BsmI GAATGC 1 cut(s) 1327
BsnI GGCC 2 cut(s) 388, 848
Bso31I GGTCTC 1 cut(s) 700
Bsp143I GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
BspACI CCGC 7 cut(s) 179, 268, 446, 457, 1103, 1127, 1205
BspANI GGCC 2 cut(s) 388, 848
BspCNI CTCAG 1 cut(s) 1112
BspDI ATCGAT 1 cut(s) 1122
BspLI GGNNCC 3 cut(s) 374, 611, 1134
BspPI GGATC 2 cut(s) 676, 1119
BspTNI GGTCTC 1 cut(s) 700
BsrI ACTGG 2 cut(s) 515, 1218
BssECI CCNNGG 5 cut(s) 27, 389, 534, 891, 1144
BssMI GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
BssT1I CCWWGG 2 cut(s) 389, 891
Bst2UI CCWGG 4 cut(s) 29, 293, 536, 1145
Bst4CI ACNGT 2 cut(s) 57, 652
BstC8I GCNNGC 2 cut(s) 227, 1284
BstDEI CTNAG 3 cut(s) 1099, 1165, 1326
BstEII GGTNACC 1 cut(s) 674
BstENI CCTNNNNNAGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 823
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 7 cut(s) 148, 312, 370, 684, 1114, 1241, 1279
BstMAI GTCTC 2 cut(s) 700, 978
BstMBI GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 845, 953, 1100, 1292
BstNI CCWGG 4 cut(s) 29, 293, 536, 1145
BstNSI RCATGY 1 cut(s) 601
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 5 cut(s) 27, 291, 534, 1051, 1143
BstV1I GCAGC 2 cut(s) 1078, 1189
BstX2I RGATCY 1 cut(s) 1238
BstYI RGATCY 1 cut(s) 1238
Bsu15I ATCGAT 1 cut(s) 1122
BsuRI GGCC 2 cut(s) 388, 848
BsuTUI ATCGAT 1 cut(s) 1122
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 227, 1284
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 373, 610
ClaI ATCGAT 1 cut(s) 1122
Csp6I GTAC 2 cut(s) 1080, 1272
CviAII CATG 2 cut(s) 598, 1261
CviQI GTAC 2 cut(s) 1080, 1272
DdeI CTNAG 3 cut(s) 1099, 1165, 1326
DpnI GATC 7 cut(s) 147, 311, 369, 683, 1113, 1240, 1278
DpnII GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
DraI TTTAAA 2 cut(s) 67, 1314
DriI GACNNNNNGTC 1 cut(s) 1250
EaeI YGGCCR 1 cut(s) 846
Eam1105I GACNNNNNGTC 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 389, 891
Eco147I AGGCCT 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 373, 610
Eco57I CTGAAG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 373, 610
EcoO65I GGTNACC 1 cut(s) 674
EcoRII CCWGG 4 cut(s) 27, 291, 534, 1143
EcoT14I CCWWGG 2 cut(s) 389, 891
ErhI CCWWGG 2 cut(s) 389, 891
FaeI CATG 2 cut(s) 601, 1264
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FatI CATG 2 cut(s) 597, 1260
FauI CCCGC 2 cut(s) 464, 1198
FbaI TGATCA 2 cut(s) 145, 1276
Fnu4HI GCNGC 3 cut(s) 447, 1092, 1203
FokI GGATG 1 cut(s) 810
Fsp4HI GCNGC 3 cut(s) 447, 1092, 1203
FspBI CTAG 4 cut(s) 584, 606, 1242, 1269
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 3 cut(s) 447, 1092, 1203
GsaI CCCAGC 3 cut(s) 158, 1182, 1202
HaeIII GGCC 2 cut(s) 388, 848
HapII CCGG 3 cut(s) 827, 836, 1052
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 2 cut(s) 601, 1264
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 2 cut(s) 118, 265
HindII GTYRAC 2 cut(s) 118, 265
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 2 cut(s) 521, 868
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 3 cut(s) 827, 836, 1052
HphI GGTGA 5 cut(s) 137, 168, 947, 1160, 1181
Hpy166II GTNNAC 2 cut(s) 118, 265
Hpy188I TCNGA 1 cut(s) 1305
Hpy188III TCNNGA 5 cut(s) 48, 307, 613, 975, 1242
Hpy8I GTNNAC 2 cut(s) 118, 265
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 118, 290, 926, 1310
HpyCH4III ACNGT 2 cut(s) 57, 652
HpyCH4V TGCA 2 cut(s) 597, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 845, 953, 1100, 1292
HpyF3I CTNAG 3 cut(s) 1099, 1165, 1326
Hsp92II CATG 2 cut(s) 601, 1264
HspAI GCGC 1 cut(s) 1094
Ksp22I TGATCA 2 cut(s) 145, 1276
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
LmnI GCTCC 3 cut(s) 922, 953, 1132
Lsp1109I GCAGC 2 cut(s) 1078, 1189
LweI GCATC 5 cut(s) 343, 433, 458, 965, 1114
MaeI CTAG 4 cut(s) 584, 606, 1242, 1269
MaeIII GTNAC 2 cut(s) 174, 674
MalI GATC 7 cut(s) 147, 311, 369, 683, 1113, 1240, 1278
MboI GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
MboII GAAGA 4 cut(s) 33, 403, 444, 488
MflI RGATCY 1 cut(s) 1238
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 2 cut(s) 668, 790
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 2 cut(s) 530, 877
MmeI TCCRAC 1 cut(s) 944
Mox20I TGGCCA 1 cut(s) 848
MscI TGGCCA 1 cut(s) 848
MseI TTAA 9 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046, 1313
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 3 cut(s) 270, 1103, 1202
MspI CCGG 3 cut(s) 827, 836, 1052
MspR9I CCNGG 5 cut(s) 29, 293, 536, 1053, 1145
MssI GTTTAAAC 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 1327
MvaI CCWGG 4 cut(s) 29, 293, 536, 1145
MwoI GCNNNNNNNGC 4 cut(s) 845, 953, 1100, 1292
NciI CCSGG 1 cut(s) 1053
NdeII GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
NlaIII CATG 2 cut(s) 601, 1264
NlaIV GGNNCC 3 cut(s) 374, 611, 1134
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 601
PceI AGGCCT 1 cut(s) 388
PctI GAATGC 1 cut(s) 1327
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 3 cut(s) 448, 1093, 1204
PleI GAGTC 2 cut(s) 529, 876
PmeI GTTTAAAC 1 cut(s) 67
PpsI GAGTC 2 cut(s) 529, 876
PpuMI RGGWCCY 2 cut(s) 373, 610
Psp5II RGGWCCY 2 cut(s) 373, 610
Psp6I CCWGG 4 cut(s) 27, 291, 534, 1143
PspEI GGTNACC 1 cut(s) 674
PspFI CCCAGC 3 cut(s) 154, 1178, 1198
PspGI CCWGG 4 cut(s) 27, 291, 534, 1143
PspN4I GGNNCC 3 cut(s) 374, 611, 1134
PspPI GGNCC 2 cut(s) 373, 610
PspPPI RGGWCCY 2 cut(s) 373, 610
PsuI RGATCY 1 cut(s) 1238
PvuII CAGCTG 1 cut(s) 1202
RsaI GTAC 2 cut(s) 1081, 1273
RsaNI GTAC 2 cut(s) 1080, 1272
SaqAI TTAA 9 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046, 1313
SatI GCNGC 3 cut(s) 447, 1092, 1203
Sau3AI GATC 7 cut(s) 145, 309, 367, 681, 1111, 1238, 1276
Sau96I GGNCC 2 cut(s) 373, 610
ScaI AGTACT 1 cut(s) 1273
SchI GAGTC 2 cut(s) 530, 877
ScrFI CCNGG 5 cut(s) 29, 293, 536, 1053, 1145
SfaNI GCATC 5 cut(s) 343, 433, 458, 965, 1114
SinI GGWCC 2 cut(s) 373, 610
SpeI ACTAGT 2 cut(s) 583, 1268
Sse9I AATT 2 cut(s) 668, 790
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 7 cut(s) 179, 268, 446, 457, 1103, 1127, 1205
SspMI CTAG 4 cut(s) 584, 606, 1242, 1269
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 5 cut(s) 27, 291, 534, 1051, 1143
StyI CCWWGG 2 cut(s) 389, 891
TaaI ACNGT 2 cut(s) 57, 652
TaqI TCGA 4 cut(s) 49, 976, 1122, 1254
TasI AATT 2 cut(s) 668, 790
TatI WGTACW 1 cut(s) 1271
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 9 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046, 1313
Tru9I TTAA 9 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046, 1313
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 2 cut(s) 1091, 1202
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 4 cut(s) 144, 585, 729, 749
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 373, 610
XagI CCTNNNNNAGG 1 cut(s) 930
XbaI TCTAGA 1 cut(s) 1241
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XspI CTAG 4 cut(s) 584, 606, 1242, 1269
ZrmI AGTACT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.