Rh7CG224300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000182
Physical Location & Seq
Forward (+)
20728850 .. 20729737
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG224300.1

Sequence Viewer

Length: 888 bp
ATGGTGGACAAAGAAGAAGGGGATCAGGATGTGGAGCCTGAAGGAATGGAGGTTGACTCGGAAATCAGAAACTTGGCAACAGAGAAGGTAATGATCTACTTCCCACAACCGGCAAAGCCTGACATCGGGCTTGATGAAGCTGATGGCCCCAAGGACAACCACAATCCGCCTTCTCCTGGTTGGACTCCGGTGGGAAGAAAGAACCATACTGTGAGTAAACCTGCTGATACTGGAACAAGCGACAATGCTGCAGACAAGGATAAGGAGAAGTTTAAGGTCTATACTCGAAAGGGCAAGAAAGTGATGGCACCTAAGAAAACTACCAGGCAGGCTCTTATCAAGCCGGGGATAAGCTCCAAGGATGCTGCCAAAGGGCATGGCACTATTGTGAATGGTGACAAGGAAACTGATAGTTTTTTCAAAGCTCAGGGGCACAAGATGGCTGTCGGGGCTGCTGGAAGCTCATCCTCAAGTGAGGAGGTGGTGAGCGGTTCTACCTCTTTCAGCTCTGTCCTATCTTATTCTTTTTTCCCTGAAATTGCTAAACTGTATAATTCCCCTATTTATTATGACCATATGACAGAGGAGTTATACTCACCTACCGATGCAGTTGCGTTCTATAATGCTAATTTTGGGTTGCCAAATGTGCAGTTTGAAAATTTTAATGATGCTAGGGCATCTGGCTTTGAGGAAGATGACAGCATGAATGAATATGAGATCAAGATGATCAATGGAAAGAGGGCTTTGTTTGCTAAGGCCGAAAGCTCAGCAATGAGTTTTGGCTCCAGGAAACGCAATCGAGAAGAAAATGAGGTTCAAAGCATGGCTGATGCTGGTGAAGCTATTGGGGAGGGCAGTGCCTCTTCTCCCAAAATCCAAAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

32.14

Weight (kDa)

5.17

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 489
AciI CCGC 2 cut(s) 167, 489
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 3 cut(s) 109, 125, 176
AgsI TTSAA 3 cut(s) 421, 656, 818
AjnI CCWGG 3 cut(s) 175, 323, 785
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 7 cut(s) 140, 354, 425, 462, 507, 765, 842
AluI AGCT 7 cut(s) 140, 354, 425, 462, 507, 765, 842
AlwI GGATC 1 cut(s) 30
AoxI GGCC 2 cut(s) 145, 756
ApeKI GCWGC 3 cut(s) 248, 365, 452
ApoI RAATTY 1 cut(s) 658
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 407, 496, 588, 848
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 235, 352, 439
BccI CCATC 3 cut(s) 137, 298, 433
BcgI CGANNNNNNTGC 4 cut(s) 230, 264, 593, 627
BciT130I CCWGG 3 cut(s) 177, 325, 787
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 3 cut(s) 249, 366, 453
BlpI GCTNAGC 1 cut(s) 766
BlsI GCNGC 3 cut(s) 250, 367, 454
Bme1390I CCNGG 4 cut(s) 177, 325, 345, 787
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 4 cut(s) 36, 148, 309, 784
BmrFI CCNGG 4 cut(s) 177, 325, 345, 787
BmsI GCATC 5 cut(s) 352, 595, 658, 686, 820
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 578, 610
BpmI CTGGAG 1 cut(s) 769
Bpu10I CCTNAGC 2 cut(s) 426, 753
Bpu1102I GCTNAGC 1 cut(s) 766
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 150, 344, 357
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 125, 176
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 3 cut(s) 177, 325, 787
BseDI CCNNGG 3 cut(s) 150, 344, 357
BseGI GGATG 3 cut(s) 34, 367, 464
BseLI CCNNNNNNNGG 3 cut(s) 109, 125, 176
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 440, 780
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 491, 599
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 3 cut(s) 235, 352, 439
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 2 cut(s) 147, 758
BshNI GGYRCC 1 cut(s) 307
BsiSI CCGG 3 cut(s) 110, 188, 344
BslI CCNNNNNNNGG 3 cut(s) 109, 125, 176
BsnI GGCC 2 cut(s) 147, 758
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 4 cut(s) 22, 93, 717, 726
Bsp1720I GCTNAGC 1 cut(s) 766
BspACI CCGC 2 cut(s) 167, 489
BspANI GGCC 2 cut(s) 147, 758
BspCNI CTCAG 2 cut(s) 439, 779
BspLI GGNNCC 4 cut(s) 36, 148, 309, 784
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 3 cut(s) 150, 344, 357
BssMI GATC 4 cut(s) 22, 93, 717, 726
BssT1I CCWWGG 2 cut(s) 150, 357
Bst2UI CCWGG 3 cut(s) 177, 325, 787
Bst4CI ACNGT 2 cut(s) 211, 549
Bst6I CTCTTC 1 cut(s) 868
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 4 cut(s) 312, 426, 753, 766
BstF5I GGATG 3 cut(s) 34, 367, 464
BstKTI GATC 4 cut(s) 25, 96, 720, 729
BstMBI GATC 4 cut(s) 22, 93, 717, 726
BstMWI GCNNNNNNNGC 4 cut(s) 449, 646, 749, 839
BstNI CCWGG 3 cut(s) 177, 325, 787
BstSCI CCNGG 4 cut(s) 175, 323, 343, 785
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 235, 352, 439
BsuRI GGCC 2 cut(s) 147, 758
BtsCI GGATG 3 cut(s) 34, 367, 464
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 862
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 4 cut(s) 377, 703, 823, 885
DdeI CTNAG 4 cut(s) 312, 426, 753, 766
DpnI GATC 4 cut(s) 24, 95, 719, 728
DpnII GATC 4 cut(s) 22, 93, 717, 726
Eam1104I CTCTTC 1 cut(s) 868
EarI CTCTTC 1 cut(s) 868
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 150, 357
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 175, 323, 785
EcoT14I CCWWGG 2 cut(s) 150, 357
ErhI CCWWGG 2 cut(s) 150, 357
FaeI CATG 4 cut(s) 380, 706, 826, 888
FatI CATG 4 cut(s) 376, 702, 822, 884
FauNDI CATATG 1 cut(s) 576
FbaI TGATCA 1 cut(s) 726
Fnu4HI GCNGC 3 cut(s) 249, 366, 453
FokI GGATG 3 cut(s) 41, 374, 451
Fsp4HI GCNGC 3 cut(s) 249, 366, 453
FspBI CTAG 1 cut(s) 672
GluI GCNGC 3 cut(s) 249, 366, 453
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 2 cut(s) 147, 758
HapII CCGG 3 cut(s) 110, 188, 344
Hin1II CATG 4 cut(s) 380, 706, 826, 888
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 2 cut(s) 56, 184
HpaII CCGG 3 cut(s) 110, 188, 344
HphI GGTGA 4 cut(s) 407, 496, 588, 848
Hpy166II GTNNAC 3 cut(s) 7, 55, 218
Hpy188I TCNGA 2 cut(s) 61, 68
Hpy188III TCNNGA 3 cut(s) 26, 721, 800
Hpy8I GTNNAC 3 cut(s) 7, 55, 218
HpyAV CCTTC 4 cut(s) 11, 35, 79, 180
HpyCH4III ACNGT 2 cut(s) 211, 549
HpyCH4V TGCA 3 cut(s) 251, 608, 649
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 646, 749, 839
HpyF3I CTNAG 4 cut(s) 312, 426, 753, 766
Hsp92II CATG 4 cut(s) 380, 706, 826, 888
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 4 cut(s) 22, 93, 717, 726
LmnI GCTCC 3 cut(s) 34, 359, 788
Lsp1109I GCAGC 3 cut(s) 235, 352, 439
LweI GCATC 5 cut(s) 352, 595, 658, 686, 820
MaeI CTAG 1 cut(s) 672
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 24, 95, 719, 728
MbiI CCGCTC 1 cut(s) 489
MboI GATC 4 cut(s) 22, 93, 717, 726
MboII GAAGA 5 cut(s) 26, 207, 704, 815, 855
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 4 cut(s) 537, 553, 628, 658
MlyI GAGTC 2 cut(s) 50, 178
MmeI TCCRAC 1 cut(s) 161
MseI TTAA 2 cut(s) 273, 663
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 3 cut(s) 110, 188, 344
MspR9I CCNGG 4 cut(s) 177, 325, 345, 787
MvaI CCWGG 3 cut(s) 177, 325, 787
MwoI GCNNNNNNNGC 4 cut(s) 449, 646, 749, 839
NciI CCSGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 576
NdeII GATC 4 cut(s) 22, 93, 717, 726
NlaIII CATG 4 cut(s) 380, 706, 826, 888
NlaIV GGNNCC 4 cut(s) 36, 148, 309, 784
NmuCI GTSAC 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 785
PkrI GCNGC 3 cut(s) 250, 367, 454
PleI GAGTC 2 cut(s) 50, 178
PpsI GAGTC 2 cut(s) 50, 178
Psp6I CCWGG 3 cut(s) 175, 323, 785
PspGI CCWGG 3 cut(s) 175, 323, 785
PspN4I GGNNCC 4 cut(s) 36, 148, 309, 784
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 2 cut(s) 273, 663
SatI GCNGC 3 cut(s) 249, 366, 453
Sau3AI GATC 4 cut(s) 22, 93, 717, 726
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 50, 178
ScrFI CCNGG 4 cut(s) 177, 325, 345, 787
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 5 cut(s) 352, 595, 658, 686, 820
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 4 cut(s) 537, 553, 628, 658
SsiI CCGC 2 cut(s) 167, 489
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 4 cut(s) 175, 323, 343, 785
StyI CCWWGG 2 cut(s) 150, 357
TaaI ACNGT 2 cut(s) 211, 549
TaqI TCGA 2 cut(s) 286, 799
TasI AATT 4 cut(s) 537, 553, 628, 658
Tru1I TTAA 2 cut(s) 273, 663
Tru9I TTAA 2 cut(s) 273, 663
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 248, 365, 452
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 150, 719, 723
TspRI CASTG 1 cut(s) 862
XapI RAATTY 1 cut(s) 658
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.