Prupe.8G054700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000182
Physical Location & Seq
Forward (+)
6264918 .. 6265677
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G054700.1

Sequence Viewer

Length: 399 bp
ATGCCTACCGAGACTCAAGACCAAGAGTGGACCGTGGTGGCTAACCGCAAAGGTAAAGCTAAGATGCAAGTTAGGATGTACGAGAGAGATGGGAGAACTTTTAGAGAAGTTGCTGAGGGGATTAAGTTTACTGAAGAAGGTGGCTCTCTTGCTGCTGGGGCTAAGGGTCAGGGCTCGAGTCTGAGTAGCAAAGGGCATGGTAAAGCTGTCATGACAGCTTCTGCTCAATCTCAAGAAGGCAGCAGCGCCTTTACTGCGTTTGCTTACAAAAGCCCTAAGAAAAGGGCTTGTGATGATGATGTTGTGAAGGAAGACTCCTTGCCTAGTTTTGGAATCAATGGAGAATCTCTGAGGGAGGCTGATACCTCTGTTCGTACCTCTCCTAATCCTATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.15

Weight (kDa)

7.83

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 80, 376
AfiI CCNNNNNNNGG 1 cut(s) 329
AluBI AGCT 3 cut(s) 59, 206, 218
AluI AGCT 3 cut(s) 59, 206, 218
Alw26I GTCTC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 3 cut(s) 152, 240, 243
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 30
BaeI ACNNNNGTAYC 2 cut(s) 354, 387
BanII GRGCYC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 139, 252, 255
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 3 cut(s) 153, 241, 244
BlsI GCNGC 3 cut(s) 154, 242, 245
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 318
Bpu10I CCTNAGC 2 cut(s) 114, 162
BpuEI CTTGAG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 105, 173, 341
BseXI GCAGC 3 cut(s) 139, 252, 255
BseYI CCCAGC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 176
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 3 cut(s) 106, 174, 342
BspHI TCATGA 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 34
BstDEI CTNAG 6 cut(s) 60, 114, 162, 182, 276, 350
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 2 cut(s) 158, 254
BstV1I GCAGC 3 cut(s) 139, 252, 255
BstV2I GAAGAC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 79, 375
CviAII CATG 3 cut(s) 197, 211, 396
CviQI GTAC 2 cut(s) 79, 375
DdeI CTNAG 6 cut(s) 60, 114, 162, 182, 276, 350
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 176
FaeI CATG 3 cut(s) 200, 214, 399
FaiI YATR 3 cut(s) 198, 212, 397
FatI CATG 3 cut(s) 196, 210, 395
Fnu4HI GCNGC 3 cut(s) 153, 241, 244
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 153, 241, 244
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 247
GluI GCNGC 3 cut(s) 153, 241, 244
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 249
HhaI GCGC 1 cut(s) 248
Hin1II CATG 3 cut(s) 200, 214, 399
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 5 cut(s) 13, 178, 314, 333, 344
Hpy166II GTNNAC 2 cut(s) 30, 129
Hpy188I TCNGA 2 cut(s) 183, 351
Hpy188III TCNNGA 3 cut(s) 17, 211, 233
Hpy8I GTNNAC 2 cut(s) 30, 129
HpyAV CCTTC 3 cut(s) 131, 230, 301
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 254
HpyF3I CTNAG 6 cut(s) 60, 114, 162, 182, 276, 350
Hsp92II CATG 3 cut(s) 200, 214, 399
HspAI GCGC 1 cut(s) 246
LpnPI CCDG 2 cut(s) 141, 155
Lsp1109I GCAGC 3 cut(s) 139, 252, 255
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 324
MboII GAAGA 2 cut(s) 146, 323
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 3 cut(s) 7, 187, 308
MnlI CCTC 5 cut(s) 109, 345, 349, 376, 388
MseI TTAA 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 158, 254
NlaIII CATG 3 cut(s) 200, 214, 399
PaeR7I CTCGAG 1 cut(s) 175
PagI TCATGA 1 cut(s) 210
PfeI GAWTC 2 cut(s) 333, 344
PkrI GCNGC 3 cut(s) 154, 242, 245
PleI GAGTC 3 cut(s) 7, 186, 308
PpsI GAGTC 3 cut(s) 7, 186, 308
PspFI CCCAGC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 30
PspXI VCTCGAGB 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 221
RsaI GTAC 2 cut(s) 80, 376
RsaNI GTAC 2 cut(s) 79, 375
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 153, 241, 244
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 3 cut(s) 7, 187, 308
SduI GDGCHC 1 cut(s) 176
SetI ASST 7 cut(s) 55, 61, 142, 208, 220, 368, 380
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 3 cut(s) 15, 175, 231
SmoI CTYRAG 3 cut(s) 15, 175, 231
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 176
TfiI GAWTC 2 cut(s) 333, 344
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 3 cut(s) 152, 240, 243
VpaK11BI GGWCC 1 cut(s) 30
XhoI CTCGAG 1 cut(s) 175
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.