Rmu_sc0005652.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005652.1
OG0000182
Physical Location & Seq
Reverse (-)
4027 .. 5515
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005652.1_g000002.1.cds

Sequence Viewer

Length: 1095 bp
atgaactttccaagcctcacctcctctgtcttgcaccgcatcattaccacctctgacctttctcttatagcatcgctcgccatcagatctggggttaatgctagccgtagttcatcatcctctatacccaatccatttcttggtttcgttcgcttgaatttggctctcttctctgtctgtgcctatgtggatgagtcctttgatgttgatcgttttgctgcccagatagatttgcctccccccccagagggtgtcttctctcatttctctaagttttgccttgttgataaaaattttgggaagcaactttctccagagactattttcgataggtgttctgaactctgggctaatctgcaaggttcaattaccataaactggttggtcaataactggcttagctttgagttctctactgaggaggatgttgagttcattctttttaggaggccttggttcatccgtagtcggctatttggtctccgaagatggactccaagttttgatcctaccctagctcgcattgataagatcatatataatgataataccatcaatggtaaaaagaccatgttcactaggattcttgttgagctagatctgagctatcctctgaagcggactgtcctagtaaataatgggaatgaacctccctctacagtgcttgtgtcggtggtgaatgacaatttcttcatggtggagcagtttgataaggagcatgttgtttaccctcctgaaatggcagataatgagtacattaaacctttcctagctgatgatatctctatcattttccctcagcctctagtggcaaaccatttccctatggcttctgatatcccctctgagaatcaagatgatggctcgtggaaaattgtttctagaaaaggaaagggaaaggatgctaggttctcaaagatgggtcgttcttttaaggatgcagctgctaggagtgatggacgccctgctatcccgacaaaaaagaaggacgtaattgtgctctctgattcatcgcaagaggtggatcaatacttggatgctgaggaagctcctaagcagggagagattgatgtcatgttagttgctaaggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

5.23

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 140, 378
AciI CCGC 2 cut(s) 37, 619
AclWI GGATC 2 cut(s) 500, 1032
AcsI RAATTY 2 cut(s) 157, 292
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 961
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 5 cut(s) 140, 247, 248, 378, 1058
AgsI TTSAA 2 cut(s) 157, 366
AloI GAACNNNNNNTCC 4 cut(s) 416, 448, 893, 925
AluBI AGCT 7 cut(s) 402, 518, 595, 606, 773, 944, 1049
AluI AGCT 7 cut(s) 402, 518, 595, 606, 773, 944, 1049
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 2 cut(s) 311, 485
AlwI GGATC 2 cut(s) 500, 1032
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 218, 941, 944
ApoI RAATTY 2 cut(s) 157, 292
AsuHPI GGTGA 2 cut(s) 10, 688
AsuNHI GCTAGC 1 cut(s) 101
BauI CACGAG 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 1002
BbvCI CCTCAGC 2 cut(s) 798, 1041
BbvI GCAGC 3 cut(s) 205, 931, 953
BccI CCATC 6 cut(s) 89, 483, 560, 854, 913, 950
BceAI ACGGC 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 311, 485
BfmI CTRYAG 1 cut(s) 657
BglII AGATCT 2 cut(s) 86, 598
BisI GCNGC 3 cut(s) 219, 942, 945
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 3 cut(s) 220, 943, 946
BmsI GCATC 5 cut(s) 48, 80, 892, 928, 1027
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 4 cut(s) 798, 1041, 1053, 1086
Bpu1102I GCTNAGC 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 961
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 247, 248, 378, 1058
Bse1I ACTGG 2 cut(s) 383, 398
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 7 cut(s) 116, 196, 430, 459, 907, 943, 1042
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 140, 247, 248, 378, 1058
BseMII CTCAG 5 cut(s) 408, 593, 812, 837, 1032
BseNI ACTGG 2 cut(s) 383, 398
BseRI GAGGAG 2 cut(s) 13, 434
BseXI GCAGC 3 cut(s) 205, 931, 953
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 1002
BslI CCNNNNNNNGG 5 cut(s) 140, 247, 248, 378, 1058
BsmAI GTCTC 2 cut(s) 311, 485
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 1002
Bsp143I GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
Bsp1720I GCTNAGC 1 cut(s) 398
BspACI CCGC 2 cut(s) 37, 619
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 5 cut(s) 409, 594, 811, 838, 1033
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 500, 1032
BspTNI GGTCTC 1 cut(s) 485
BsrI ACTGG 2 cut(s) 383, 398
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
BssNI GRCGYC 1 cut(s) 961
BssSI CACGAG 1 cut(s) 865
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 865
Bst4CI ACNGT 2 cut(s) 625, 661
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 961
BstC8I GCNNGC 3 cut(s) 78, 103, 520
BstDEI CTNAG 9 cut(s) 270, 398, 417, 602, 798, 846, 1041, 1053, 1086
BstF5I GGATG 7 cut(s) 116, 196, 430, 459, 907, 943, 1042
BstKTI GATC 6 cut(s) 89, 211, 508, 534, 601, 1027
BstMAI GTCTC 2 cut(s) 311, 485
BstMBI GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
BstMWI GCNNNNNNNGC 2 cut(s) 77, 1046
BstNSI RCATGY 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 3 cut(s) 205, 931, 953
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 2 cut(s) 86, 598
BstYI RGATCY 2 cut(s) 86, 598
BsuRI GGCC 1 cut(s) 451
BtgZI GCGATG 2 cut(s) 57, 996
BtsCI GGATG 7 cut(s) 116, 196, 430, 459, 907, 943, 1042
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 3 cut(s) 78, 103, 520
CseI GACGC 1 cut(s) 969
Csp6I GTAC 1 cut(s) 754
CviAII CATG 4 cut(s) 571, 694, 719, 1075
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 9 cut(s) 270, 398, 417, 602, 798, 846, 1041, 1053, 1086
DpnI GATC 6 cut(s) 88, 210, 507, 533, 600, 1026
DpnII GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 485
Eco32I GATATC 2 cut(s) 781, 838
Eco57I CTGAAG 1 cut(s) 635
EcoRV GATATC 2 cut(s) 781, 838
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 4 cut(s) 574, 697, 722, 1078
FatI CATG 4 cut(s) 570, 693, 718, 1074
Fnu4HI GCNGC 3 cut(s) 219, 942, 945
FokI GGATG 7 cut(s) 103, 203, 437, 446, 914, 950, 1049
Fsp4HI GCNGC 3 cut(s) 219, 942, 945
GluI GCNGC 3 cut(s) 219, 942, 945
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 451
HgaI GACGC 1 cut(s) 969
Hin1I GRCGYC 1 cut(s) 961
Hin1II CATG 4 cut(s) 574, 697, 722, 1078
HinfI GANTC 5 cut(s) 194, 493, 583, 850, 1007
HphI GGTGA 2 cut(s) 10, 688
Hpy166II GTNNAC 2 cut(s) 576, 727
Hpy188I TCNGA 9 cut(s) 55, 86, 340, 485, 603, 615, 835, 847, 1006
Hpy188III TCNNGA 5 cut(s) 314, 734, 854, 882, 973
Hpy8I GTNNAC 2 cut(s) 576, 727
HpyAV CCTTC 1 cut(s) 979
HpyCH4III ACNGT 2 cut(s) 625, 661
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 3 cut(s) 34, 358, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 1046
HpyF3I CTNAG 9 cut(s) 270, 398, 417, 602, 798, 846, 1041, 1053, 1086
HpySE526I ACGT 1 cut(s) 990
Hsp92I GRCGYC 1 cut(s) 961
Hsp92II CATG 4 cut(s) 574, 697, 722, 1078
Kzo9I GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
LmnI GCTCC 3 cut(s) 700, 715, 1054
Lsp1109I GCAGC 3 cut(s) 205, 931, 953
LweI GCATC 5 cut(s) 48, 80, 892, 928, 1027
MaeII ACGT 1 cut(s) 990
MalI GATC 6 cut(s) 88, 210, 507, 533, 600, 1026
MboI GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
MboII GAAGA 4 cut(s) 160, 247, 498, 682
MflI RGATCY 2 cut(s) 86, 598
MhlI GDGCHC 1 cut(s) 1002
MluCI AATT 6 cut(s) 157, 292, 366, 685, 873, 993
MlyI GAGTC 2 cut(s) 203, 487
MseI TTAA 4 cut(s) 96, 759, 933, 1093
MspA1I CMGCKG 1 cut(s) 944
MwoI GCNNNNNNNGC 2 cut(s) 77, 1046
NdeII GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 574, 697, 722, 1078
NspI RCATGY 1 cut(s) 722
PceI AGGCCT 1 cut(s) 451
PfeI GAWTC 3 cut(s) 583, 850, 1007
PflMI CCANNNNNTGG 2 cut(s) 140, 378
PkrI GCNGC 3 cut(s) 220, 943, 946
PleI GAGTC 2 cut(s) 202, 487
PpsI GAGTC 2 cut(s) 202, 487
PsuI RGATCY 2 cut(s) 86, 598
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
SaqAI TTAA 4 cut(s) 96, 759, 933, 1093
SatI GCNGC 3 cut(s) 219, 942, 945
Sau3AI GATC 6 cut(s) 86, 208, 505, 531, 598, 1024
SchI GAGTC 2 cut(s) 203, 487
SduI GDGCHC 1 cut(s) 1002
SfaNI GCATC 5 cut(s) 48, 80, 892, 928, 1027
SfcI CTRYAG 1 cut(s) 657
Sse9I AATT 6 cut(s) 157, 292, 366, 685, 873, 993
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 2 cut(s) 37, 619
StuI AGGCCT 1 cut(s) 451
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 625, 661
TaiI ACGT 1 cut(s) 993
TaqI TCGA 1 cut(s) 327
TasI AATT 6 cut(s) 157, 292, 366, 685, 873, 993
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 3 cut(s) 583, 850, 1007
Tru1I TTAA 4 cut(s) 96, 759, 933, 1093
Tru9I TTAA 4 cut(s) 96, 759, 933, 1093
TscAI CASTG 1 cut(s) 666
TseI GCWGC 3 cut(s) 218, 941, 944
TspDTI ATGAA 7 cut(s) 17, 102, 424, 448, 660, 682, 999
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 2 cut(s) 140, 378
XapI RAATTY 2 cut(s) 157, 292
XbaI TCTAGA 1 cut(s) 881
XceI RCATGY 1 cut(s) 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.