Rh7CG267100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000182
Physical Location & Seq
Reverse (-)
26206457 .. 26207146
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG267100.1

Sequence Viewer

Length: 690 bp
ATGGCAGTTTTTCCTCAGCCCAATACCTCTGTTATTCGTGGTCAAGGCCCCACTGAATCCTTTGCTGAACAAGAAGGACAGGATGATATTAATCCCTTATCTCCAAACTGGAGCCTTGTGACCAGGAAAAGGACTCCAGGTGCCGGGTCTTTTACTAGAAAACAGGGTAACGGTAAAGCCACTATTGGAACCAGATCCCTACCAACTCCAAACCGGAGTGGTTTAGTCAAAGATGGCCTCTCTTTCAAAGATGATACTCGAGGTGGTATCACTGTTGGTAGCCCGCTTAGGACTATGAATAAGCTTGGAAATTCTGATGCTGATCTTTCTCCTAACTCCCAGGACTTGGTGAGTGGCTCTTTACACTTAAATGATCCTAAGCCTCTTCTTTCTTTCTCTTCATTCCCAAATATTGCTAAATTCTATGCCTCTCTTGATGTTGATAACTATGTCTTGAGGAATTACAACCTGGATTCAACCTATTCCCCAACTGATGCTGTTGAGTTTTATAACAGCTTCTTTAATAACCCTTTATCTTACTCTCAGGACAACTTTATGGATGCTAAAGAGGATGATGAAAATGCTTTCGTCAATAATCTAATTGCTCTTGAAAATTTTGCGTGGAGGCTTGGGACAACGACAACCTGGAAGATCACATGGAAGTTAGCTTTGGTTATCGTAGCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.22

Weight (kDa)

5.4

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 346
AciI CCGC 1 cut(s) 284
AclWI GGATC 2 cut(s) 189, 368
AcsI RAATTY 3 cut(s) 310, 419, 613
AfiI CCNNNNNNNGG 3 cut(s) 129, 143, 346
AgsI TTSAA 3 cut(s) 247, 477, 611
AjnI CCWGG 5 cut(s) 122, 136, 339, 468, 644
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 3 cut(s) 304, 516, 668
AluI AGCT 3 cut(s) 304, 516, 668
AlwI GGATC 2 cut(s) 189, 368
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 2 cut(s) 46, 235
ApoI RAATTY 3 cut(s) 310, 419, 613
AseI ATTAAT 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 258
BanI GGYRCC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 5 cut(s) 124, 138, 341, 470, 646
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 1 cut(s) 156
Bme1390I CCNGG 6 cut(s) 124, 138, 145, 341, 470, 646
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 4 cut(s) 49, 113, 142, 190
BmrFI CCNGG 6 cut(s) 124, 138, 145, 341, 470, 646
BmsI GCATC 3 cut(s) 307, 484, 550
BpmI CTGGAG 2 cut(s) 120, 130
Bpu10I CCTNAGC 3 cut(s) 15, 287, 378
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 145
BsaBI GATNNNNATC 2 cut(s) 90, 321
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 143, 346
Bse1I ACTGG 1 cut(s) 113
Bse8I GATNNNNATC 2 cut(s) 90, 321
BseBI CCWGG 5 cut(s) 124, 138, 341, 470, 646
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 3 cut(s) 88, 565, 577
BseJI GATNNNNATC 2 cut(s) 90, 321
BseLI CCNNNNNNNGG 3 cut(s) 129, 143, 346
BseMII CTCAG 2 cut(s) 29, 557
BseNI ACTGG 1 cut(s) 113
BshFI GGCC 2 cut(s) 48, 237
BshNI GGYRCC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 144, 214
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 3 cut(s) 129, 143, 346
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 48, 237
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 4 cut(s) 194, 322, 373, 651
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 48, 237
BspCNI CTCAG 2 cut(s) 28, 556
BspLI GGNNCC 4 cut(s) 49, 113, 142, 190
BspPI GGATC 2 cut(s) 189, 368
BspT107I GGYRCC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 4 cut(s) 194, 322, 373, 651
Bst2UI CCWGG 5 cut(s) 124, 138, 341, 470, 646
Bst4CI ACNGT 2 cut(s) 173, 274
Bst6I CTCTTC 2 cut(s) 390, 403
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 4 cut(s) 15, 287, 378, 543
BstF5I GGATG 3 cut(s) 88, 565, 577
BstKTI GATC 4 cut(s) 197, 325, 376, 654
BstMBI GATC 4 cut(s) 194, 322, 373, 651
BstNI CCWGG 5 cut(s) 124, 138, 341, 470, 646
BstSCI CCNGG 6 cut(s) 122, 136, 143, 339, 468, 644
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 2 cut(s) 48, 237
BtsCI GGATG 3 cut(s) 88, 565, 577
BtsIMutI CAGTG 3 cut(s) 51, 270, 685
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 1 cut(s) 657
DdeI CTNAG 4 cut(s) 15, 287, 378, 543
DpnI GATC 4 cut(s) 196, 324, 375, 653
DpnII GATC 4 cut(s) 194, 322, 373, 651
Eam1104I CTCTTC 2 cut(s) 390, 403
EarI CTCTTC 2 cut(s) 390, 403
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 5 cut(s) 122, 136, 339, 468, 644
FaeI CATG 1 cut(s) 660
FaiI YATR 6 cut(s) 296, 426, 450, 510, 557, 658
FaqI GGGAC 1 cut(s) 646
FatI CATG 1 cut(s) 656
FauI CCCGC 1 cut(s) 291
FokI GGATG 3 cut(s) 95, 572, 584
FspBI CTAG 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 120, 130
HaeIII GGCC 2 cut(s) 48, 237
HapII CCGG 2 cut(s) 144, 214
Hin1II CATG 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 3 cut(s) 56, 133, 473
HpaII CCGG 2 cut(s) 144, 214
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 434, 454, 545, 608
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 173, 274
HpyF3I CTNAG 4 cut(s) 15, 287, 378, 543
Hsp92II CATG 1 cut(s) 660
Kzo9I GATC 4 cut(s) 194, 322, 373, 651
LmnI GCTCC 1 cut(s) 111
LweI GCATC 3 cut(s) 307, 484, 550
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 118, 167
MalI GATC 4 cut(s) 196, 324, 375, 653
MboI GATC 4 cut(s) 194, 322, 373, 651
MboII GAAGA 3 cut(s) 377, 390, 661
MflI RGATCY 1 cut(s) 194
MluCI AATT 5 cut(s) 310, 419, 460, 600, 613
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 9 cut(s) 24, 37, 248, 254, 393, 439, 450, 562, 618
MseI TTAA 3 cut(s) 90, 368, 522
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 2 cut(s) 144, 214
MspR9I CCNGG 6 cut(s) 124, 138, 145, 341, 470, 646
MvaI CCWGG 5 cut(s) 124, 138, 341, 470, 646
NciI CCSGG 1 cut(s) 145
NdeII GATC 4 cut(s) 194, 322, 373, 651
NlaIII CATG 1 cut(s) 660
NlaIV GGNNCC 4 cut(s) 49, 113, 142, 190
NmuCI GTSAC 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 258
PfeI GAWTC 2 cut(s) 56, 473
PflMI CCANNNNNTGG 1 cut(s) 346
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 90
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 5 cut(s) 122, 136, 339, 468, 644
PspGI CCWGG 5 cut(s) 122, 136, 339, 468, 644
PspN4I GGNNCC 4 cut(s) 49, 113, 142, 190
PspPI GGNCC 1 cut(s) 47
PspXI VCTCGAGB 1 cut(s) 258
PsuI RGATCY 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 90, 368, 522
Sau3AI GATC 4 cut(s) 194, 322, 373, 651
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 6 cut(s) 124, 138, 145, 341, 470, 646
SetI ASST 9 cut(s) 29, 142, 265, 306, 471, 482, 518, 647, 670
SfaNI GCATC 3 cut(s) 307, 484, 550
Sfr274I CTCGAG 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 258, 454
SmoI CTYRAG 2 cut(s) 258, 454
Sse9I AATT 5 cut(s) 310, 419, 460, 600, 613
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 6 cut(s) 122, 136, 143, 339, 468, 644
TaaI ACNGT 2 cut(s) 173, 274
TaqI TCGA 1 cut(s) 259
TasI AATT 5 cut(s) 310, 419, 460, 600, 613
TfiI GAWTC 2 cut(s) 56, 473
Tru1I TTAA 3 cut(s) 90, 368, 522
Tru9I TTAA 3 cut(s) 90, 368, 522
TscAI CASTG 2 cut(s) 58, 277
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 311, 390, 591
TspRI CASTG 2 cut(s) 58, 277
Van91I CCANNNNNTGG 1 cut(s) 346
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 3 cut(s) 310, 419, 613
XhoI CTCGAG 1 cut(s) 258
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.