Rmu_sc0004454.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004454.1
OG0000182
Physical Location & Seq
Forward (+)
21746 .. 23110
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004454.1_g000007.1.cds

Sequence Viewer

Length: 954 bp
atggctttcaaccccgcttctcaagcacagctagctgctggcattagaagacctatcccagctcgccaatatttcccttttcctagtaaccagattagatctgagtccatcccagtggttataggagataataccatcaatattgataggtttgctgtccaagttgatatgccaccacccccacctgatttcaacaactactattccaggtttagtcttgtggggaaaatatttggagccttagtctctccagatgttgttctcagcaagtgttcggaactctggtataaccttaagggagtcatcaatatgactgggttggcaaacaattggtattgttttgagtttaacaatgaagatgatgtcctcttcatccttcaaaataggccttggtacattaggagaaggcttttctggatccaacggtggactccagagtttgatgccacaaccaatgttatcgaccgcttaatggtctgggttagactacctaatctgcctctacctcattggaatgagtcctccctcaagtacctaggacagtatcttggtagttttgttctggctgatgagctcaccctatcaggcaaaaaaacaatgtttgcaaggatcaagattgagctagatctgcgctatcctctgaaaaggacggtcttggttaataaccctgatggtaagtcctcaacttttgtattggtctcttgtgaagtaattttcgaggatgttgttgctggtacttcggttgctgcggttgctatacccgttcttgctacggccaaacagaaggatgttgttgttctctcctcggactcctctcaggaggtggatcagtaccttgatggttttgaagtccctaaatttggggatattgatgctctgttgaaagatgaggctaatttccatgttcttggctctagtggtgccagtcctgtggcctcgagccctaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

317

Amino Acids

35.62

Weight (kDa)

5.82

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AciI CCGC 3 cut(s) 15, 466, 749
AclWI GGATC 4 cut(s) 412, 425, 617, 834
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 1 cut(s) 857
AfaI GTAC 4 cut(s) 395, 533, 736, 833
AfiI CCNNNNNNNGG 2 cut(s) 472, 860
AflII CTTAAG 1 cut(s) 293
AgsI TTSAA 5 cut(s) 10, 193, 380, 848, 883
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 5 cut(s) 31, 35, 62, 574, 622
AluI AGCT 5 cut(s) 31, 35, 62, 574, 622
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 2 cut(s) 250, 703
AlwI GGATC 4 cut(s) 412, 425, 617, 834
Ama87I CYCGRG 1 cut(s) 937
AoxI GGCC 3 cut(s) 386, 774, 933
ApeKI GCWGC 2 cut(s) 35, 746
ApoI RAATTY 1 cut(s) 857
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 568
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 937
AvrII CCTAGG 1 cut(s) 535
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BamHI GGATCC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 2 cut(s) 576, 944
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 22, 733
BccI CCATC 4 cut(s) 116, 143, 665, 833
BceAI ACGGC 1 cut(s) 789
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 250, 703
BfaI CTAG 5 cut(s) 32, 84, 536, 623, 915
BfrI CTTAAG 1 cut(s) 293
BglII AGATCT 2 cut(s) 98, 625
BisI GCNGC 2 cut(s) 36, 747
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 2 cut(s) 37, 748
Bme1390I CCNGG 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 937
BmiI GGNNCC 3 cut(s) 238, 419, 922
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 2 cut(s) 107, 324
BmsI GCATC 2 cut(s) 433, 862
BmtI GCTAGC 1 cut(s) 35
BmuI ACTGGG 2 cut(s) 107, 324
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 2 cut(s) 234, 417
BpuEI CTTGAG 2 cut(s) 6, 512
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 389, 535, 804
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 860
Bse1I ACTGG 3 cut(s) 113, 319, 924
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 389, 535, 804
BseGI GGATG 4 cut(s) 108, 372, 727, 793
BseLI CCNNNNNNNGG 2 cut(s) 472, 860
BseMII CTCAG 3 cut(s) 93, 277, 830
BseNI ACTGG 3 cut(s) 113, 319, 924
BseRI GAGGAG 2 cut(s) 793, 802
BseXI GCAGC 2 cut(s) 22, 733
BseYI CCCAGC 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 3 cut(s) 388, 776, 935
BshNI GGYRCC 1 cut(s) 920
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 937
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 2 cut(s) 472, 860
BsmAI GTCTC 2 cut(s) 250, 703
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 3 cut(s) 388, 776, 935
Bso31I GGTCTC 1 cut(s) 703
BsoBI CYCGRG 1 cut(s) 937
Bsp1286I GDGCHC 2 cut(s) 576, 944
Bsp143I GATC 5 cut(s) 98, 417, 609, 625, 826
BspACI CCGC 3 cut(s) 15, 466, 749
BspANI GGCC 3 cut(s) 388, 776, 935
BspCNI CTCAG 3 cut(s) 94, 276, 829
BspLI GGNNCC 3 cut(s) 238, 419, 922
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 4 cut(s) 412, 425, 617, 834
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 703
BsrI ACTGG 3 cut(s) 113, 319, 924
BssECI CCNNGG 3 cut(s) 389, 535, 804
BssMI GATC 5 cut(s) 98, 417, 609, 625, 826
BssT1I CCWWGG 2 cut(s) 389, 535
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 3 cut(s) 426, 543, 652
Bst6I CTCTTC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 33, 40, 64
BstDEI CTNAG 4 cut(s) 102, 241, 263, 816
BstF5I GGATG 4 cut(s) 108, 372, 727, 793
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 5 cut(s) 101, 420, 612, 628, 829
BstMAI GTCTC 2 cut(s) 250, 703
BstMBI GATC 5 cut(s) 98, 417, 609, 625, 826
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 628, 752
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 22, 733
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 3 cut(s) 98, 417, 625
BstXI CCANNNNNNTGG 3 cut(s) 115, 908, 931
BstYI RGATCY 3 cut(s) 98, 417, 625
BsuRI GGCC 3 cut(s) 388, 776, 935
BtsCI GGATG 4 cut(s) 108, 372, 727, 793
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 33, 40, 64
CfoI GCGC 1 cut(s) 633
Csp6I GTAC 4 cut(s) 394, 532, 735, 832
CviAII CATG 1 cut(s) 902
CviQI GTAC 4 cut(s) 394, 532, 735, 832
DdeI CTNAG 4 cut(s) 102, 241, 263, 816
DpnI GATC 5 cut(s) 100, 419, 611, 627, 828
DpnII GATC 5 cut(s) 98, 417, 609, 625, 826
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 389, 535
Eco147I AGGCCT 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 576, 944
Eco31I GGTCTC 1 cut(s) 703
Eco53kI GAGCTC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 389, 535
EcoT38I GRGCYC 2 cut(s) 576, 944
ErhI CCWWGG 2 cut(s) 389, 535
FaeI CATG 1 cut(s) 905
FaiI YATR 6 cut(s) 122, 170, 288, 311, 758, 903
FaqI GGGAC 1 cut(s) 836
FatI CATG 1 cut(s) 901
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 36, 747
FokI GGATG 4 cut(s) 95, 359, 734, 800
FriOI GRGCYC 2 cut(s) 576, 944
Fsp4HI GCNGC 2 cut(s) 36, 747
FspBI CTAG 5 cut(s) 32, 84, 536, 623, 915
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 36, 747
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 2 cut(s) 234, 417
HaeIII GGCC 3 cut(s) 388, 776, 935
HhaI GCGC 1 cut(s) 633
Hin1II CATG 1 cut(s) 905
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HinfI GANTC 5 cut(s) 104, 300, 430, 518, 809
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 103, 277, 642, 808
Hpy188III TCNNGA 5 cut(s) 251, 415, 434, 613, 818
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 3 cut(s) 386, 399, 778
HpyCH4III ACNGT 3 cut(s) 426, 543, 652
HpyCH4V TGCA 1 cut(s) 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 628, 752
HpyF3I CTNAG 4 cut(s) 102, 241, 263, 816
Hsp92II CATG 1 cut(s) 905
HspAI GCGC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 98, 417, 609, 625, 826
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 2 cut(s) 22, 733
LweI GCATC 2 cut(s) 433, 862
MaeI CTAG 5 cut(s) 32, 84, 536, 623, 915
MaeIII GTNAC 1 cut(s) 86
MalI GATC 5 cut(s) 100, 419, 611, 627, 828
MboI GATC 5 cut(s) 98, 417, 609, 625, 826
MboII GAAGA 3 cut(s) 60, 361, 368
MfeI CAATTG 1 cut(s) 328
MflI RGATCY 3 cut(s) 98, 417, 625
MhlI GDGCHC 2 cut(s) 576, 944
MluCI AATT 4 cut(s) 328, 711, 857, 895
MlyI GAGTC 5 cut(s) 113, 309, 424, 527, 803
MmeI TCCRAC 1 cut(s) 445
MseI TTAA 4 cut(s) 294, 348, 470, 660
MslI CAYNNNNRTG 3 cut(s) 113, 308, 513
MspCI CTTAAG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 628, 752
NdeII GATC 5 cut(s) 98, 417, 609, 625, 826
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 905
NlaIV GGNNCC 3 cut(s) 238, 419, 922
PaeR7I CTCGAG 1 cut(s) 937
PceI AGGCCT 1 cut(s) 388
PkrI GCNGC 2 cut(s) 37, 748
PleI GAGTC 5 cut(s) 112, 308, 424, 526, 803
PpsI GAGTC 5 cut(s) 112, 308, 424, 526, 803
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 238, 419, 922
PspXI VCTCGAGB 1 cut(s) 937
PsuI RGATCY 3 cut(s) 98, 417, 625
RsaI GTAC 4 cut(s) 395, 533, 736, 833
RsaNI GTAC 4 cut(s) 394, 532, 735, 832
RseI CAYNNNNRTG 3 cut(s) 113, 308, 513
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 4 cut(s) 294, 348, 470, 660
SatI GCNGC 2 cut(s) 36, 747
Sau3AI GATC 5 cut(s) 98, 417, 609, 625, 826
SchI GAGTC 5 cut(s) 113, 309, 424, 527, 803
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 2 cut(s) 576, 944
SfaNI GCATC 2 cut(s) 433, 862
Sfr274I CTCGAG 1 cut(s) 937
SlaI CTCGAG 1 cut(s) 937
SmiMI CAYNNNNRTG 3 cut(s) 113, 308, 513
SmlI CTYRAG 4 cut(s) 21, 293, 527, 937
SmoI CTYRAG 4 cut(s) 21, 293, 527, 937
Sse9I AATT 4 cut(s) 328, 711, 857, 895
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 3 cut(s) 15, 466, 749
SspI AATATT 3 cut(s) 71, 142, 231
SspMI CTAG 5 cut(s) 32, 84, 536, 623, 915
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 389, 535
TaaI ACNGT 3 cut(s) 426, 543, 652
TaqI TCGA 3 cut(s) 462, 717, 938
TasI AATT 4 cut(s) 328, 711, 857, 895
Tru1I TTAA 4 cut(s) 294, 348, 470, 660
Tru9I TTAA 4 cut(s) 294, 348, 470, 660
TscAI CASTG 1 cut(s) 120
TseI GCWGC 2 cut(s) 35, 746
TspDTI ATGAA 2 cut(s) 361, 369
TspRI CASTG 1 cut(s) 120
Vha464I CTTAAG 1 cut(s) 293
XapI RAATTY 1 cut(s) 857
XhoI CTCGAG 1 cut(s) 937
XmaJI CCTAGG 1 cut(s) 535
XspI CTAG 5 cut(s) 32, 84, 536, 623, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.