Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 45 |
| AccB1I | GGYRCC | 1 cut(s) | 394 |
| AclWI | GGATC | 2 cut(s) | 170, 929 |
| AcsI | RAATTY | 2 cut(s) | 633, 878 |
| AcuI | CTGAAG | 1 cut(s) | 591 |
| AgsI | TTSAA | 4 cut(s) | 124, 224, 507, 639 |
| AjnI | CCWGG | 1 cut(s) | 642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 204, 236 |
| AluBI | AGCT | 7 cut(s) | 350, 419, 430, 441, 548, 569, 664 |
| AluI | AGCT | 7 cut(s) | 350, 419, 430, 441, 548, 569, 664 |
| Alw21I | GWGCWC | 1 cut(s) | 666 |
| Alw26I | GTCTC | 1 cut(s) | 140 |
| AlwI | GGATC | 2 cut(s) | 170, 929 |
| Ama87I | CYCGRG | 3 cut(s) | 23, 740, 916 |
| AoxI | GGCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 4 cut(s) | 452, 538, 715, 834 |
| ApoI | RAATTY | 2 cut(s) | 633, 878 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 353, 385 |
| AspLEI | GCGC | 1 cut(s) | 839 |
| AsuHPI | GGTGA | 3 cut(s) | 105, 400, 686 |
| AvaI | CYCGRG | 3 cut(s) | 23, 740, 916 |
| BanI | GGYRCC | 1 cut(s) | 394 |
| BanII | GRGCYC | 2 cut(s) | 666, 749 |
| BauI | CACGAG | 1 cut(s) | 677 |
| Bbv12I | GWGCWC | 1 cut(s) | 666 |
| BbvI | GCAGC | 4 cut(s) | 439, 525, 727, 846 |
| BccI | CCATC | 6 cut(s) | 6, 385, 526, 714, 813, 868 |
| BceAI | ACGGC | 1 cut(s) | 602 |
| BciT130I | CCWGG | 1 cut(s) | 644 |
| BcoDI | GTCTC | 1 cut(s) | 140 |
| BfuAI | ACCTGC | 1 cut(s) | 45 |
| BisI | GCNGC | 4 cut(s) | 453, 539, 716, 835 |
| BlsI | GCNGC | 4 cut(s) | 454, 540, 717, 836 |
| Bme1390I | CCNGG | 1 cut(s) | 644 |
| BmeT110I | CYCGRG | 3 cut(s) | 23, 740, 916 |
| BmiI | GGNNCC | 4 cut(s) | 170, 396, 469, 599 |
| BmrFI | CCNGG | 1 cut(s) | 644 |
| BmrI | ACTGGG | 1 cut(s) | 878 |
| BmsI | GCATC | 1 cut(s) | 439 |
| BmuI | ACTGGG | 1 cut(s) | 878 |
| BpmI | CTGGAG | 1 cut(s) | 214 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BsaJI | CCNNGG | 1 cut(s) | 917 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 750, 780 |
| Bse1I | ACTGG | 2 cut(s) | 728, 884 |
| Bse3DI | GCAATG | 1 cut(s) | 621 |
| BseBI | CCWGG | 1 cut(s) | 644 |
| BseDI | CCNNGG | 1 cut(s) | 917 |
| BseGI | GGATG | 3 cut(s) | 17, 454, 550 |
| BseMI | GCAATG | 1 cut(s) | 621 |
| BseMII | CTCAG | 2 cut(s) | 425, 879 |
| BseNI | ACTGG | 2 cut(s) | 728, 884 |
| BseRI | GAGGAG | 2 cut(s) | 758, 853 |
| BseXI | GCAGC | 4 cut(s) | 439, 525, 727, 846 |
| BseYI | CCCAGC | 1 cut(s) | 430 |
| Bsh1285I | CGRYCG | 1 cut(s) | 235 |
| BshFI | GGCC | 1 cut(s) | 57 |
| BshNI | GGYRCC | 1 cut(s) | 394 |
| BsiEI | CGRYCG | 1 cut(s) | 235 |
| BsiHKAI | GWGCWC | 1 cut(s) | 666 |
| BsiHKCI | CYCGRG | 3 cut(s) | 23, 740, 916 |
| BslFI | GGGAC | 1 cut(s) | 374 |
| BsmAI | GTCTC | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 374 |
| BsnI | GGCC | 1 cut(s) | 57 |
| BsoBI | CYCGRG | 3 cut(s) | 23, 740, 916 |
| Bsp1286I | GDGCHC | 2 cut(s) | 666, 749 |
| Bsp143I | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| BspANI | GGCC | 1 cut(s) | 57 |
| BspCNI | CTCAG | 2 cut(s) | 424, 878 |
| BspLI | GGNNCC | 4 cut(s) | 170, 396, 469, 599 |
| BspMI | ACCTGC | 1 cut(s) | 45 |
| BspPI | GGATC | 2 cut(s) | 170, 929 |
| BspT107I | GGYRCC | 1 cut(s) | 394 |
| BsrDI | GCAATG | 1 cut(s) | 621 |
| BsrI | ACTGG | 2 cut(s) | 728, 884 |
| BssECI | CCNNGG | 1 cut(s) | 917 |
| BssMI | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| BssSI | CACGAG | 1 cut(s) | 677 |
| Bst2BI | CACGAG | 1 cut(s) | 677 |
| Bst2UI | CCWGG | 1 cut(s) | 644 |
| Bst4CI | ACNGT | 5 cut(s) | 131, 499, 808, 815, 826 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 789 |
| BstC8I | GCNNGC | 4 cut(s) | 417, 589, 649, 790 |
| BstDEI | CTNAG | 3 cut(s) | 399, 411, 865 |
| BstEII | GGTNACC | 2 cut(s) | 111, 692 |
| BstF5I | GGATG | 3 cut(s) | 17, 454, 550 |
| BstHHI | GCGC | 1 cut(s) | 839 |
| BstKTI | GATC | 5 cut(s) | 165, 231, 310, 776, 924 |
| BstMAI | GTCTC | 1 cut(s) | 140 |
| BstMBI | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| BstMCI | CGRYCG | 1 cut(s) | 235 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 535, 566, 623, 789 |
| BstNI | CCWGG | 1 cut(s) | 644 |
| BstNSI | RCATGY | 1 cut(s) | 792 |
| BstPI | GGTNACC | 2 cut(s) | 111, 692 |
| BstSCI | CCNGG | 1 cut(s) | 642 |
| BstV1I | GCAGC | 4 cut(s) | 439, 525, 727, 846 |
| BstX2I | RGATCY | 1 cut(s) | 921 |
| BstYI | RGATCY | 1 cut(s) | 921 |
| BsuRI | GGCC | 1 cut(s) | 57 |
| BtsCI | GGATG | 3 cut(s) | 17, 454, 550 |
| BtsI | GCAGTG | 1 cut(s) | 783 |
| BtsIMutI | CAGTG | 2 cut(s) | 127, 783 |
| BveI | ACCTGC | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 4 cut(s) | 417, 589, 649, 790 |
| CfoI | GCGC | 1 cut(s) | 839 |
| CviAII | CATG | 3 cut(s) | 514, 557, 789 |
| DdeI | CTNAG | 3 cut(s) | 399, 411, 865 |
| DpnI | GATC | 5 cut(s) | 164, 230, 309, 775, 923 |
| DpnII | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| Ecl136II | GAGCTC | 1 cut(s) | 664 |
| Eco24I | GRGCYC | 2 cut(s) | 666, 749 |
| Eco53kI | GAGCTC | 1 cut(s) | 664 |
| Eco57I | CTGAAG | 1 cut(s) | 591 |
| Eco88I | CYCGRG | 3 cut(s) | 23, 740, 916 |
| Eco91I | GGTNACC | 2 cut(s) | 111, 692 |
| EcoICRI | GAGCTC | 1 cut(s) | 664 |
| EcoO65I | GGTNACC | 2 cut(s) | 111, 692 |
| EcoRI | GAATTC | 1 cut(s) | 878 |
| EcoRII | CCWGG | 1 cut(s) | 642 |
| EcoT38I | GRGCYC | 2 cut(s) | 666, 749 |
| FaeI | CATG | 3 cut(s) | 517, 560, 792 |
| FaiI | YATR | 8 cut(s) | 99, 279, 297, 299, 515, 558, 687, 790 |
| FaqI | GGGAC | 1 cut(s) | 374 |
| FatI | CATG | 3 cut(s) | 513, 556, 788 |
| Fnu4HI | GCNGC | 4 cut(s) | 453, 539, 716, 835 |
| FokI | GGATG | 3 cut(s) | 24, 461, 537 |
| FriOI | GRGCYC | 2 cut(s) | 666, 749 |
| Fsp4HI | GCNGC | 4 cut(s) | 453, 539, 716, 835 |
| GlaI | GCGC | 1 cut(s) | 838 |
| GluI | GCNGC | 4 cut(s) | 453, 539, 716, 835 |
| GsaI | CCCAGC | 1 cut(s) | 434 |
| GsuI | CTGGAG | 1 cut(s) | 214 |
| HaeIII | GGCC | 1 cut(s) | 57 |
| HhaI | GCGC | 1 cut(s) | 839 |
| Hin1II | CATG | 3 cut(s) | 517, 560, 792 |
| Hin6I | GCGC | 1 cut(s) | 837 |
| HinP1I | GCGC | 1 cut(s) | 837 |
| HincII | GTYRAC | 2 cut(s) | 49, 811 |
| HindII | GTYRAC | 2 cut(s) | 49, 811 |
| HindIII | AAGCTT | 1 cut(s) | 439 |
| HinfI | GANTC | 1 cut(s) | 291 |
| HpaI | GTTAAC | 1 cut(s) | 811 |
| HphI | GGTGA | 3 cut(s) | 105, 400, 686 |
| Hpy166II | GTNNAC | 3 cut(s) | 30, 49, 811 |
| Hpy188I | TCNGA | 3 cut(s) | 344, 773, 868 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 193, 742 |
| Hpy8I | GTNNAC | 3 cut(s) | 30, 49, 811 |
| HpyAV | CCTTC | 7 cut(s) | 126, 130, 350, 397, 519, 611, 790 |
| HpyCH4III | ACNGT | 5 cut(s) | 131, 499, 808, 815, 826 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 535, 566, 623, 789 |
| HpyF3I | CTNAG | 3 cut(s) | 399, 411, 865 |
| Hsp92II | CATG | 3 cut(s) | 517, 560, 792 |
| HspAI | GCGC | 1 cut(s) | 837 |
| KspAI | GTTAAC | 1 cut(s) | 811 |
| Kzo9I | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| LmnI | GCTCC | 4 cut(s) | 174, 195, 603, 669 |
| Lsp1109I | GCAGC | 4 cut(s) | 439, 525, 727, 846 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeIII | GTNAC | 3 cut(s) | 111, 692, 906 |
| MalI | GATC | 5 cut(s) | 164, 230, 309, 775, 923 |
| MboI | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| MboII | GAAGA | 2 cut(s) | 170, 584 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 1 cut(s) | 921 |
| MhlI | GDGCHC | 2 cut(s) | 666, 749 |
| MluCI | AATT | 5 cut(s) | 141, 303, 563, 633, 878 |
| MlyI | GAGTC | 1 cut(s) | 300 |
| MmeI | TCCRAC | 1 cut(s) | 235 |
| MseI | TTAA | 3 cut(s) | 243, 444, 810 |
| MslI | CAYNNNNRTG | 1 cut(s) | 555 |
| MspR9I | CCNGG | 1 cut(s) | 644 |
| MunI | CAATTG | 1 cut(s) | 141 |
| MvaI | CCWGG | 1 cut(s) | 644 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 535, 566, 623, 789 |
| NdeII | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| NlaIII | CATG | 3 cut(s) | 517, 560, 792 |
| NlaIV | GGNNCC | 4 cut(s) | 170, 396, 469, 599 |
| NmuCI | GTSAC | 3 cut(s) | 111, 692, 906 |
| NspI | RCATGY | 1 cut(s) | 792 |
| PaeI | GCATGC | 1 cut(s) | 792 |
| PaeR7I | CTCGAG | 2 cut(s) | 23, 740 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 900, 909 |
| PkrI | GCNGC | 4 cut(s) | 454, 540, 717, 836 |
| PleI | GAGTC | 1 cut(s) | 299 |
| PpsI | GAGTC | 1 cut(s) | 299 |
| Psp124BI | GAGCTC | 1 cut(s) | 666 |
| Psp6I | CCWGG | 1 cut(s) | 642 |
| PspEI | GGTNACC | 2 cut(s) | 111, 692 |
| PspFI | CCCAGC | 1 cut(s) | 430 |
| PspGI | CCWGG | 1 cut(s) | 642 |
| PspN4I | GGNNCC | 4 cut(s) | 170, 396, 469, 599 |
| PspXI | VCTCGAGB | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 921 |
| RseI | CAYNNNNRTG | 1 cut(s) | 555 |
| SacI | GAGCTC | 1 cut(s) | 666 |
| SaqAI | TTAA | 3 cut(s) | 243, 444, 810 |
| SatI | GCNGC | 4 cut(s) | 453, 539, 716, 835 |
| Sau3AI | GATC | 5 cut(s) | 162, 228, 307, 773, 921 |
| SchI | GAGTC | 1 cut(s) | 300 |
| ScrFI | CCNGG | 1 cut(s) | 644 |
| SduI | GDGCHC | 2 cut(s) | 666, 749 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| Sfr274I | CTCGAG | 2 cut(s) | 23, 740 |
| SlaI | CTCGAG | 2 cut(s) | 23, 740 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 555 |
| SmlI | CTYRAG | 3 cut(s) | 23, 59, 740 |
| SmoI | CTYRAG | 3 cut(s) | 23, 59, 740 |
| SphI | GCATGC | 1 cut(s) | 792 |
| Sse9I | AATT | 5 cut(s) | 141, 303, 563, 633, 878 |
| SspI | AATATT | 1 cut(s) | 93 |
| SstI | GAGCTC | 1 cut(s) | 666 |
| StyD4I | CCNGG | 1 cut(s) | 642 |
| TaaI | ACNGT | 5 cut(s) | 131, 499, 808, 815, 826 |
| TaqI | TCGA | 5 cut(s) | 24, 741, 794, 817, 912 |
| TaqII | GACCGA | 1 cut(s) | 221 |
| TasI | AATT | 5 cut(s) | 141, 303, 563, 633, 878 |
| Tru1I | TTAA | 3 cut(s) | 243, 444, 810 |
| Tru9I | TTAA | 3 cut(s) | 243, 444, 810 |
| TscAI | CASTG | 2 cut(s) | 134, 790 |
| TseFI | GTSAC | 3 cut(s) | 111, 692, 906 |
| TseI | GCWGC | 4 cut(s) | 452, 538, 715, 834 |
| Tsp45I | GTSAC | 3 cut(s) | 111, 692, 906 |
| TspDTI | ATGAA | 1 cut(s) | 369 |
| TspRI | CASTG | 2 cut(s) | 134, 790 |
| XapI | RAATTY | 2 cut(s) | 633, 878 |
| XceI | RCATGY | 1 cut(s) | 792 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 189 |
| XhoI | CTCGAG | 2 cut(s) | 23, 740 |