Rh3BG228800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000182
Physical Location & Seq
Forward (+)
21050657 .. 21052354
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG228800.1

Sequence Viewer

Length: 1698 bp
ATGGCTTACAGCCCTAACGCCCGAGCCCAAAGCAACCCCCCTCGAAGAAACCCTACATTTTTCAATCCCTATCCCAAACCAAACAGAAATGAACCACCTTTTGTTGCTAACATTGGCGGTACTCGTATAGTGGTAGAGAGCAGTCAAACCCAGGTGTTTATTCCTAGGCATTCCATTACCAACAAGGAACACCTCACCAACTACTGTCTTCTAGCCAAATTTTTTGGCAAGAAGGTGTCTCCTAGGAAAATCGCTAGGAAGTGCAATAGGATGTGGTCCTGCCTACAAGGGACTGTCAAGCTGACTCAAATGGCTAATGGATGGTACTCCCTCGAGTTCACCTACCTACAAGATGTCGATTTTGTCCTTGAGCACAGACCATGGTTTGTCAAGGGCAGAATTTTCCATATCCGGAAGTGGTCGCCTTCCTTTAACCCTCGTGAGGCTACAATTGAGACTTTGGTGCTGTGGATCAGGCTTCCAAATCTCCCATTACACTTCTGGAGCAGAGAGGCAATCCAACCGATTGTTCAGGTGGTTGGACATTTTATTAAACTGGATGAAAGAACAGAGGAAAGTGAGAACTATATCTTCGCTAGAGTCTGTATGGAAATTGACCTCAAAACCCCACTTAAAAGGGTTTTGGTTGTCCGAGAGGCTGATGAAGGAGACCTGCCCTTCGACTTGGTAAGCCCTCCTGCAAAGATTTTCATTTCATATGAAGCTATCTTTGAAATTTGTTTTGAATGCGGAAGCCACAAACATGTTATCCGCAAGTGCCCCTATAAGAAGAAAGAGAAGCACTTTGTCATGGTGGACAAAGAAGAAGGGGATCAGGATGTGGAGCCTGAAGGAATGGAGGTTGACTCGGAAATAAGAAACTTGGCAACAGAGAAGGTAATGATCTACTTCCCACAACCGGCAAAGCCTGACTTCGGCCTTGATGAAGTTGATGGCCCCAAGGACAACCACAATCCGTCTTCTCCTGATTGGACTCCGGTGGGAAGAAGGAACCGTACTGTGAGTAAACCGGCTGATACTGAAACAAGCGAAACTCCTGCAGACAAGAATAAGGAGAAAGTTAAGGTCTATACTCGAAAGGGCAAGGAAGTGATGGCACCTAAGAAAGCTACTAGGCAGGCTCTTATCAAGCCGGGGATAAGCTTTAAGGATGCTGCTAAAGGGCATGGCACTATTGTGATTGGTGACAAGGAAACTGATAGTTTTTTCAAAGCTCAGGGGCACAAGAAGACTGTCGGGGCTGTTGGAAGCTCATCCTCAAGTGAGGAGGTGGTGAGTGGTTCTACCTCTTTCAGCTCTGTCCTCTCTTATTCTTCTTTCCCTGAAATTGCTAAACTGTATAATTCCCCTATTTGCTATGACCATTTGATAGAGGAGTTATACTCACCTACGGATGCAGTTGCGTCCTATAATGCTAATTTGGGGTTGCCAAATGTGCAGTTTGAAAATTTTAATGATGCTAGGGCATCTAGGTTTGAGGAAGATGACAGCATGAATGAATATGAGATCCAGATGATCAATGGAAAGAGGGCTTTGTTTGCTAAGGCTGACAGCTCGGTAATGAGTTCTGGCTCCAGGAAACGTAATCAAGAAGAAAATGAGGATCAAAGCATGGCTGATGCTGGTGAAGCTGTTGGGGAGGGCAGCGCCTCTTCTCCCAAAATCCAGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

565

Amino Acids

63.88

Weight (kDa)

7.6

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 66 - 147 6.5e-15 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 1117
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 3 cut(s) 117, 750, 772
AclWI GGATC 4 cut(s) 479, 840, 1522, 1632
AcsI RAATTY 4 cut(s) 218, 399, 735, 1468
AcuI CTGAAG 1 cut(s) 870
AfaI GTAC 3 cut(s) 121, 326, 1018
AfiI CCNNNNNNNGG 3 cut(s) 442, 919, 935
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 5 cut(s) 64, 734, 746, 1231, 1466
AjnI CCWGG 2 cut(s) 150, 1595
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AleI CACNNNNGTG 1 cut(s) 1196
AluBI AGCT 9 cut(s) 301, 725, 1130, 1164, 1235, 1272, 1317, 1575, 1652
AluI AGCT 9 cut(s) 301, 725, 1130, 1164, 1235, 1272, 1317, 1575, 1652
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 243, 449, 663
AlwI GGATC 4 cut(s) 479, 840, 1522, 1632
Ama87I CYCGRG 2 cut(s) 21, 332
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 2 cut(s) 937, 955
ApeKI GCWGC 2 cut(s) 1175, 1665
ApoI RAATTY 4 cut(s) 218, 399, 735, 1468
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspA2I CCTAGG 2 cut(s) 164, 242
AspLEI GCGC 1 cut(s) 1670
AspS9I GGNCC 2 cut(s) 276, 956
AsuC2I CCSGG 1 cut(s) 1155
AsuHPI GGTGA 6 cut(s) 187, 331, 1217, 1306, 1398, 1658
AvaI CYCGRG 2 cut(s) 21, 332
AvaII GGWCC 1 cut(s) 276
AvrII CCTAGG 2 cut(s) 164, 242
BaeGI GKGCMC 2 cut(s) 782, 1245
BanI GGYRCC 1 cut(s) 1117
BanII GRGCYC 1 cut(s) 28
BarI GAAGNNNNNNTAC 4 cut(s) 37, 69, 1000, 1032
BauI CACGAG 1 cut(s) 438
BbsI GAAGAC 3 cut(s) 200, 972, 1256
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 1162, 1677
BccI CCATC 3 cut(s) 315, 947, 1108
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BciT130I CCWGG 2 cut(s) 152, 1597
BclI TGATCA 1 cut(s) 1536
BcnI CCSGG 1 cut(s) 1155
BcoDI GTCTC 3 cut(s) 243, 449, 663
BfaI CTAG 8 cut(s) 165, 212, 243, 255, 597, 1134, 1482, 1491
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 1 cut(s) 1671
BfuAI ACCTGC 1 cut(s) 681
BisI GCNGC 2 cut(s) 1176, 1666
BlnI CCTAGG 2 cut(s) 164, 242
BlsI GCNGC 2 cut(s) 1177, 1667
Bme1390I CCNGG 3 cut(s) 152, 1155, 1597
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 2 cut(s) 21, 332
BmgT120I GGNCC 2 cut(s) 276, 956
BmiI GGNNCC 5 cut(s) 846, 958, 1013, 1119, 1594
BmrFI CCNGG 3 cut(s) 152, 1155, 1597
BmsI GCATC 5 cut(s) 1162, 1405, 1468, 1496, 1630
BpiI GAAGAC 3 cut(s) 200, 972, 1256
BplI GAGNNNNNCTC 4 cut(s) 851, 883, 1388, 1420
BpmI CTGGAG 2 cut(s) 523, 1579
Bpu10I CCTNAGC 2 cut(s) 1236, 1563
BpuEI CTTGAG 2 cut(s) 389, 1264
BpuMI CCSGG 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 6 cut(s) 150, 164, 242, 380, 960, 1154
BsaWI WCCGGW 2 cut(s) 411, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 919, 935
Bse118I RCCGGY 2 cut(s) 919, 1030
Bse1I ACTGG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 411
BseBI CCWGG 2 cut(s) 152, 1597
BseDI CCNNGG 6 cut(s) 150, 164, 242, 380, 960, 1154
BseGI GGATG 7 cut(s) 276, 326, 565, 844, 1177, 1274, 1420
BseLI CCNNNNNNNGG 3 cut(s) 442, 919, 935
BseMII CTCAG 1 cut(s) 1250
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 2 cut(s) 1301, 1409
BseSI GKGCMC 2 cut(s) 782, 1245
BseXI GCAGC 2 cut(s) 1162, 1677
BsgI GTGCAG 1 cut(s) 1478
BshFI GGCC 2 cut(s) 939, 957
BshNI GGYRCC 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 2 cut(s) 21, 332
BsiSI CCGG 5 cut(s) 412, 920, 998, 1031, 1154
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 442, 919, 935
BsmAI GTCTC 3 cut(s) 243, 449, 663
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 2 cut(s) 169, 752
BsnI GGCC 2 cut(s) 939, 957
Bso31I GGTCTC 1 cut(s) 663
BsoBI CYCGRG 2 cut(s) 21, 332
Bsp1286I GDGCHC 4 cut(s) 28, 375, 782, 1245
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 3 cut(s) 117, 750, 772
BspANI GGCC 2 cut(s) 939, 957
BspCNI CTCAG 1 cut(s) 1249
BspEI TCCGGA 1 cut(s) 411
BspLI GGNNCC 5 cut(s) 846, 958, 1013, 1119, 1594
BspMAI CTGCAG 1 cut(s) 1063
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 4 cut(s) 479, 840, 1522, 1632
BspT107I GGYRCC 1 cut(s) 1117
BspTNI GGTCTC 1 cut(s) 663
BsrFI RCCGGY 2 cut(s) 919, 1030
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 919, 1030
BssECI CCNNGG 6 cut(s) 150, 164, 242, 380, 960, 1154
BssMI GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 4 cut(s) 164, 242, 380, 960
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 152, 1597
Bst4CI ACNGT 6 cut(s) 206, 295, 1016, 1021, 1255, 1359
Bst6I CTCTTC 1 cut(s) 1678
BstC8I GCNNGC 1 cut(s) 1140
BstDEI CTNAG 3 cut(s) 1122, 1236, 1563
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 7 cut(s) 276, 326, 565, 844, 1177, 1274, 1420
BstH2I RGCGCY 1 cut(s) 1671
BstHHI GCGC 1 cut(s) 1670
BstKTI GATC 6 cut(s) 474, 835, 906, 1530, 1539, 1627
BstMAI GTCTC 3 cut(s) 243, 449, 663
BstMBI GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
BstMWI GCNNNNNNNGC 3 cut(s) 1456, 1559, 1649
BstNI CCWGG 2 cut(s) 152, 1597
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 3 cut(s) 150, 1153, 1595
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 2 cut(s) 782, 1245
BstV1I GCAGC 2 cut(s) 1162, 1677
BstV2I GAAGAC 3 cut(s) 200, 972, 1256
BstX2I RGATCY 1 cut(s) 1527
BstYI RGATCY 1 cut(s) 1527
BsuRI GGCC 2 cut(s) 939, 957
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 7 cut(s) 276, 326, 565, 844, 1177, 1274, 1420
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 1140
CfoI GCGC 1 cut(s) 1670
Cfr10I RCCGGY 2 cut(s) 919, 1030
Cfr13I GGNCC 2 cut(s) 276, 956
CseI GACGC 1 cut(s) 1413
Csp6I GTAC 3 cut(s) 120, 325, 1017
CviAII CATG 7 cut(s) 381, 764, 811, 1187, 1513, 1633, 1695
CviQI GTAC 3 cut(s) 120, 325, 1017
DdeI CTNAG 3 cut(s) 1122, 1236, 1563
DpnI GATC 6 cut(s) 473, 834, 905, 1529, 1538, 1626
DpnII GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
Eam1104I CTCTTC 1 cut(s) 1678
EarI CTCTTC 1 cut(s) 1678
Eco130I CCWWGG 4 cut(s) 164, 242, 380, 960
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 870
Eco88I CYCGRG 2 cut(s) 21, 332
EcoRII CCWGG 2 cut(s) 150, 1595
EcoT14I CCWWGG 4 cut(s) 164, 242, 380, 960
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 4 cut(s) 164, 242, 380, 960
FaeI CATG 7 cut(s) 384, 767, 814, 1190, 1516, 1636, 1698
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 1 cut(s) 304
FatI CATG 7 cut(s) 380, 763, 810, 1186, 1512, 1632, 1694
FauNDI CATATG 1 cut(s) 718
FbaI TGATCA 1 cut(s) 1536
Fnu4HI GCNGC 2 cut(s) 1176, 1666
FokI GGATG 7 cut(s) 283, 333, 572, 851, 1184, 1261, 1427
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 1176, 1666
FspBI CTAG 8 cut(s) 165, 212, 243, 255, 597, 1134, 1482, 1491
GlaI GCGC 1 cut(s) 1669
GluI GCNGC 2 cut(s) 1176, 1666
GsuI CTGGAG 2 cut(s) 523, 1579
HaeII RGCGCY 1 cut(s) 1671
HaeIII GGCC 2 cut(s) 939, 957
HapII CCGG 5 cut(s) 412, 920, 998, 1031, 1154
HgaI GACGC 1 cut(s) 1413
HhaI GCGC 1 cut(s) 1670
Hin1II CATG 7 cut(s) 384, 767, 814, 1190, 1516, 1636, 1698
Hin6I GCGC 1 cut(s) 1668
HinP1I GCGC 1 cut(s) 1668
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 1 cut(s) 1162
HinfI GANTC 4 cut(s) 304, 600, 866, 994
HpaII CCGG 5 cut(s) 412, 920, 998, 1031, 1154
HphI GGTGA 6 cut(s) 187, 331, 1217, 1306, 1398, 1658
Hpy166II GTNNAC 4 cut(s) 339, 817, 865, 1028
Hpy188I TCNGA 2 cut(s) 653, 871
Hpy188III TCNNGA 8 cut(s) 412, 440, 502, 836, 986, 1531, 1610, 1687
Hpy8I GTNNAC 4 cut(s) 339, 817, 865, 1028
HpyAV CCTTC 8 cut(s) 226, 435, 659, 688, 821, 845, 889, 1002
HpyCH4III ACNGT 6 cut(s) 206, 295, 1016, 1021, 1255, 1359
HpyCH4IV ACGT 1 cut(s) 1603
HpyCH4V TGCA 5 cut(s) 264, 701, 1061, 1418, 1459
HpyF10VI GCNNNNNNNGC 3 cut(s) 1456, 1559, 1649
HpyF3I CTNAG 3 cut(s) 1122, 1236, 1563
HpySE526I ACGT 1 cut(s) 1603
Hsp92II CATG 7 cut(s) 384, 767, 814, 1190, 1516, 1636, 1698
HspAI GCGC 1 cut(s) 1668
Kpn2I TCCGGA 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 1536
Kzo9I GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
LmnI GCTCC 3 cut(s) 504, 844, 1598
Lsp1109I GCAGC 2 cut(s) 1162, 1677
LweI GCATC 5 cut(s) 1162, 1405, 1468, 1496, 1630
MaeI CTAG 8 cut(s) 165, 212, 243, 255, 597, 1134, 1482, 1491
MaeII ACGT 1 cut(s) 1603
MaeIII GTNAC 1 cut(s) 1205
MalI GATC 6 cut(s) 473, 834, 905, 1529, 1538, 1626
MboI GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 1527
MhlI GDGCHC 4 cut(s) 28, 375, 782, 1245
MluCI AATT 9 cut(s) 218, 399, 450, 612, 735, 1347, 1363, 1438, 1468
MlyI GAGTC 4 cut(s) 298, 609, 860, 988
MmeI TCCRAC 3 cut(s) 520, 544, 1246
MroI TCCGGA 1 cut(s) 411
MseI TTAA 6 cut(s) 432, 552, 633, 1083, 1167, 1473
MslI CAYNNNNRTG 2 cut(s) 762, 1196
MspI CCGG 5 cut(s) 412, 920, 998, 1031, 1154
MspR9I CCNGG 3 cut(s) 152, 1155, 1597
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 2 cut(s) 169, 752
MvaI CCWGG 2 cut(s) 152, 1597
MwoI GCNNNNNNNGC 3 cut(s) 1456, 1559, 1649
NciI CCSGG 1 cut(s) 1155
NcoI CCATGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 718
NdeII GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
NlaIII CATG 7 cut(s) 384, 767, 814, 1190, 1516, 1636, 1698
NlaIV GGNNCC 5 cut(s) 846, 958, 1013, 1119, 1594
NmuCI GTSAC 1 cut(s) 1205
NspI RCATGY 1 cut(s) 767
OliI CACNNNNGTG 1 cut(s) 1196
PaeR7I CTCGAG 1 cut(s) 332
PciI ACATGT 1 cut(s) 763
PctI GAATGC 2 cut(s) 169, 752
PfoI TCCNGGA 1 cut(s) 1595
PkrI GCNGC 2 cut(s) 1177, 1667
PleI GAGTC 4 cut(s) 298, 608, 860, 988
PpsI GAGTC 4 cut(s) 298, 608, 860, 988
PscI ACATGT 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 150, 1595
PspGI CCWGG 2 cut(s) 150, 1595
PspN4I GGNNCC 5 cut(s) 846, 958, 1013, 1119, 1594
PspPI GGNCC 2 cut(s) 276, 956
PspXI VCTCGAGB 1 cut(s) 332
PstI CTGCAG 1 cut(s) 1063
PsuI RGATCY 1 cut(s) 1527
RsaI GTAC 3 cut(s) 121, 326, 1018
RsaNI GTAC 3 cut(s) 120, 325, 1017
RseI CAYNNNNRTG 2 cut(s) 762, 1196
SaqAI TTAA 6 cut(s) 432, 552, 633, 1083, 1167, 1473
SatI GCNGC 2 cut(s) 1176, 1666
Sau3AI GATC 6 cut(s) 471, 832, 903, 1527, 1536, 1624
Sau96I GGNCC 2 cut(s) 276, 956
SchI GAGTC 4 cut(s) 298, 609, 860, 988
ScrFI CCNGG 3 cut(s) 152, 1155, 1597
SduI GDGCHC 4 cut(s) 28, 375, 782, 1245
SfaNI GCATC 5 cut(s) 1162, 1405, 1468, 1496, 1630
SfcI CTRYAG 1 cut(s) 1059
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 762, 1196
SmlI CTYRAG 3 cut(s) 332, 368, 1279
SmoI CTYRAG 3 cut(s) 332, 368, 1279
Sse9I AATT 9 cut(s) 218, 399, 450, 612, 735, 1347, 1363, 1438, 1468
SsiI CCGC 3 cut(s) 117, 750, 772
SspMI CTAG 8 cut(s) 165, 212, 243, 255, 597, 1134, 1482, 1491
StyD4I CCNGG 3 cut(s) 150, 1153, 1595
StyI CCWWGG 4 cut(s) 164, 242, 380, 960
TaaI ACNGT 6 cut(s) 206, 295, 1016, 1021, 1255, 1359
TaiI ACGT 1 cut(s) 1606
TaqI TCGA 5 cut(s) 43, 333, 357, 681, 1096
TasI AATT 9 cut(s) 218, 399, 450, 612, 735, 1347, 1363, 1438, 1468
Tru1I TTAA 6 cut(s) 432, 552, 633, 1083, 1167, 1473
Tru9I TTAA 6 cut(s) 432, 552, 633, 1083, 1167, 1473
TseFI GTSAC 1 cut(s) 1205
TseI GCWGC 2 cut(s) 1175, 1665
Tsp45I GTSAC 1 cut(s) 1205
TspDTI ATGAA 9 cut(s) 105, 576, 678, 700, 705, 735, 960, 1529, 1533
TspGWI ACGGA 2 cut(s) 966, 1427
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 4 cut(s) 218, 399, 735, 1468
XceI RCATGY 1 cut(s) 767
XcmI CCANNNNNNNNNTGG 2 cut(s) 498, 1538
XhoI CTCGAG 1 cut(s) 332
XmaJI CCTAGG 2 cut(s) 164, 242
XspI CTAG 8 cut(s) 165, 212, 243, 255, 597, 1134, 1482, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.