Rh7CG131500

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000182
Physical Location & Seq
Forward (+)
10428712 .. 10429479
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG131500.1

Sequence Viewer

Length: 660 bp
ATGTTTGCATGGATCAAGATTGAGTTGGATCTGCGCTATCCTCTGAAAAGAACGGTCTTGGTCAATAATCCAGATGGTAAGTCTTCAACATTGGTTTTGGTCTCTTATGAAGTAATTTTCGAGGTGTGTTTTAGATGTGGCCTCTACAGCCAAAAGAATCATGTCTGTCCTCGAAGAAATATTAAGGATAGTTTTTTCATGGTTGAAAGAATGGAGAATGAGCAGGCGGTTTATCCAGCAGACATGGCTAACAATGAGTTCATTCAGCCTCTTCTTTCAAATGATATCTCTATTATCTTCCCGCAACCAATGTTTAATTACTATGATGCGGGAAATTATGGAACTAATTCGGGAACCTTTTCTGCAAATGTTGGAGATCAGGATCCAGATCAAGACCATGGTCCTTGGAAGATCGTTTCTCGGCGGGGAAAGGGGAAAGGTACTTCGGCTGCTGCGGCTGCTGTACCTGTTCTTGCTGCGGCCAAACAGAAGGATGTTGTTGATCTCTCCTCGGACTCCTCTCAGGAGGTGGATCAGTACCTCGATGCGTTTGAAGTCCCTAAGTTTGGGGATATTGATGCTTTGCTGAAAGATGAGCCTAATTTCCCTATTCCTAGCTCTAGTGGTGCCGGTCCTGTGGCCCCGAGCCCTAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

219

Amino Acids

24.19

Weight (kDa)

4.98

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 626
AciI CCGC 6 cut(s) 227, 302, 329, 424, 455, 479
AclWI GGATC 5 cut(s) 20, 36, 377, 390, 540
AcoI YGGCCR 1 cut(s) 480
AfaI GTAC 3 cut(s) 442, 465, 539
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 4 cut(s) 87, 206, 279, 554
AluBI AGCT 1 cut(s) 618
AluI AGCT 1 cut(s) 618
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 5 cut(s) 20, 36, 377, 390, 540
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 3 cut(s) 139, 480, 639
ApeKI GCWGC 4 cut(s) 449, 452, 458, 476
Asp700I GAANNNNTTC 2 cut(s) 346, 358
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 3 cut(s) 401, 632, 640
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 2 cut(s) 401, 632
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 436, 439, 445, 463
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 615, 621
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 6 cut(s) 450, 453, 456, 459, 477, 480
BlsI GCNGC 6 cut(s) 451, 454, 457, 460, 478, 481
Bme18I GGWCC 2 cut(s) 401, 632
BmeT110I CYCGRG 1 cut(s) 643
BmgT120I GGNCC 3 cut(s) 401, 632, 640
BmiI GGNNCC 4 cut(s) 355, 384, 628, 642
BmsI GCATC 3 cut(s) 316, 535, 568
BoxI GACNNNNGTC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 75
BsaBI GATNNNNATC 2 cut(s) 381, 387
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 397, 404, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 629
Bse8I GATNNNNATC 2 cut(s) 381, 387
BseDI CCNNGG 3 cut(s) 397, 404, 510
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 2 cut(s) 381, 387
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 536
BseRI GAGGAG 2 cut(s) 499, 508
BseXI GCAGC 4 cut(s) 436, 439, 445, 463
BshFI GGCC 3 cut(s) 141, 482, 641
BshNI GGYRCC 1 cut(s) 626
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 3 cut(s) 141, 482, 641
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 650
Bsp143I GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 6 cut(s) 227, 302, 329, 424, 455, 479
BspANI GGCC 3 cut(s) 141, 482, 641
BspCNI CTCAG 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 355, 384, 628, 642
BspPI GGATC 5 cut(s) 20, 36, 377, 390, 540
BspT107I GGYRCC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 397, 404, 510
BssMI GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
BssT1I CCWWGG 2 cut(s) 397, 404
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 522, 561
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 8 cut(s) 15, 31, 379, 385, 391, 414, 505, 535
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
BstMWI GCNNNNNNNGC 4 cut(s) 147, 245, 455, 458
BstPAI GACNNNNGTC 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 4 cut(s) 436, 439, 445, 463
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 28, 382
BstYI RGATCY 2 cut(s) 28, 382
BsuRI GGCC 3 cut(s) 141, 482, 641
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 3 cut(s) 401, 632, 640
Csp6I GTAC 3 cut(s) 441, 464, 538
CviAII CATG 5 cut(s) 9, 161, 199, 244, 398
CviQI GTAC 3 cut(s) 441, 464, 538
DdeI CTNAG 2 cut(s) 522, 561
DpnI GATC 8 cut(s) 14, 30, 378, 384, 390, 413, 504, 534
DpnII GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 397, 404
Eco24I GRGCYC 1 cut(s) 650
Eco31I GGTCTC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 401, 632
Eco88I CYCGRG 1 cut(s) 643
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 397, 404
EcoT38I GRGCYC 1 cut(s) 650
ErhI CCWWGG 2 cut(s) 397, 404
FaeI CATG 5 cut(s) 12, 164, 202, 247, 401
FaiI YATR 8 cut(s) 10, 108, 162, 200, 245, 324, 339, 399
FaqI GGGAC 1 cut(s) 542
FatI CATG 5 cut(s) 8, 160, 198, 243, 397
FauI CCCGC 3 cut(s) 309, 322, 417
Fnu4HI GCNGC 6 cut(s) 450, 453, 456, 459, 477, 480
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 6 cut(s) 450, 453, 456, 459, 477, 480
FspBI CTAG 2 cut(s) 615, 621
GlaI GCGC 1 cut(s) 35
GluI GCNGC 6 cut(s) 450, 453, 456, 459, 477, 480
HaeIII GGCC 3 cut(s) 141, 482, 641
HapII CCGG 1 cut(s) 630
HhaI GCGC 1 cut(s) 36
Hin1II CATG 5 cut(s) 12, 164, 202, 247, 401
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 157, 515
HpaII CCGG 1 cut(s) 630
Hpy188I TCNGA 2 cut(s) 45, 514
Hpy188III TCNNGA 7 cut(s) 16, 71, 351, 380, 386, 392, 524
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 8, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 245, 455, 458
HpyF3I CTNAG 2 cut(s) 522, 561
Hsp92II CATG 5 cut(s) 12, 164, 202, 247, 401
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
LpnPI CCDG 9 cut(s) 84, 209, 249, 365, 399, 480, 509, 643, 648
Lsp1109I GCAGC 4 cut(s) 436, 439, 445, 463
LweI GCATC 3 cut(s) 316, 535, 568
MaeI CTAG 2 cut(s) 615, 621
MalI GATC 8 cut(s) 14, 30, 378, 384, 390, 413, 504, 534
MboI GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
MboII GAAGA 5 cut(s) 75, 186, 263, 289, 421
MflI RGATCY 2 cut(s) 28, 382
MhlI GDGCHC 1 cut(s) 650
MluCI AATT 5 cut(s) 114, 316, 334, 346, 601
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 6, 352
MnlI CCTC 9 cut(s) 51, 115, 152, 180, 279, 520, 520, 529, 551
MroXI GAANNNNTTC 2 cut(s) 346, 358
MseI TTAA 2 cut(s) 183, 315
MspI CCGG 1 cut(s) 630
MwoI GCNNNNNNNGC 4 cut(s) 147, 245, 455, 458
NcoI CCATGG 1 cut(s) 397
NdeII GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
NlaIII CATG 5 cut(s) 12, 164, 202, 247, 401
NlaIV GGNNCC 4 cut(s) 355, 384, 628, 642
NmeAIII GCCGAG 1 cut(s) 400
PdmI GAANNNNTTC 2 cut(s) 346, 358
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 6 cut(s) 451, 454, 457, 460, 478, 481
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PshAI GACNNNNGTC 1 cut(s) 399
PspN4I GGNNCC 4 cut(s) 355, 384, 628, 642
PspPI GGNCC 3 cut(s) 401, 632, 640
PsuI RGATCY 2 cut(s) 28, 382
RsaI GTAC 3 cut(s) 442, 465, 539
RsaNI GTAC 3 cut(s) 441, 464, 538
SaqAI TTAA 2 cut(s) 183, 315
SatI GCNGC 6 cut(s) 450, 453, 456, 459, 477, 480
Sau3AI GATC 8 cut(s) 12, 28, 376, 382, 388, 411, 502, 532
Sau96I GGNCC 3 cut(s) 401, 632, 640
SchI GAGTC 1 cut(s) 509
SduI GDGCHC 1 cut(s) 650
SetI ASST 7 cut(s) 126, 359, 442, 469, 531, 543, 620
SfaNI GCATC 3 cut(s) 316, 535, 568
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 2 cut(s) 401, 632
Sse9I AATT 5 cut(s) 114, 316, 334, 346, 601
SsiI CCGC 6 cut(s) 227, 302, 329, 424, 455, 479
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 615, 621
StyI CCWWGG 2 cut(s) 397, 404
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 3 cut(s) 120, 172, 543
TasI AATT 5 cut(s) 114, 316, 334, 346, 601
TauI GCSGC 2 cut(s) 458, 482
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 183, 315
Tru9I TTAA 2 cut(s) 183, 315
TseI GCWGC 4 cut(s) 449, 452, 458, 476
TspDTI ATGAA 3 cut(s) 123, 187, 250
VpaK11BI GGWCC 2 cut(s) 401, 632
XmnI GAANNNNTTC 2 cut(s) 346, 358
XspI CTAG 2 cut(s) 615, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.