Rroxscaffold_1G00020860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000182
Physical Location & Seq
Forward (+)
25453592 .. 25456342
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020860.1

Sequence Viewer

Length: 255 bp
ATGCAGTTTGAAAATTTTAGCGATGCTAGGGCCTCGGGTTTTGTTGGGGATAATCGGGACCAGGATATGAATGAGTATGAGATTCGAATGATAAATGGAAGGAGGGCTTTGATGGTTGTTCGGGAGAGCTGCGAGAGGAGCTCGGGATCTAAGAAGAGAACCAGGAAAATGGCTCAAGATGACAACATGACTATAGCTACTGCAGGAATTGCCGAGGGAGACAGCGCCTCATCTCACAAGGCACCAAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

7.91

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 13
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 2 cut(s) 60, 161
AluBI AGCT 3 cut(s) 129, 141, 197
AluI AGCT 3 cut(s) 129, 141, 197
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 2 cut(s) 34, 142
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 30, 58
AsuII TTCGAA 1 cut(s) 85
AvaI CYCGRG 2 cut(s) 34, 142
AvaII GGWCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 62, 163
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 192, 201
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 62, 163
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 34, 142
BmgT120I GGNCC 2 cut(s) 30, 58
BmiI GGNNCC 2 cut(s) 59, 243
BmrFI CCNGG 2 cut(s) 62, 163
BmsI GCATC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 33, 213
BseBI CCWGG 2 cut(s) 62, 163
BseDI CCNNGG 2 cut(s) 33, 213
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 2 cut(s) 34, 142
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 34, 142
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 146
BspANI GGCC 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 59, 243
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 33, 213
BssMI GATC 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 62, 163
Bst6I CTCTTC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 138, 209
BstNI CCWGG 2 cut(s) 62, 163
BstSCI CCNGG 2 cut(s) 60, 161
BstSFI CTRYAG 2 cut(s) 192, 201
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 36
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 30, 58
CviAII CATG 2 cut(s) 187, 252
CviJI RGCY 6 cut(s) 32, 107, 129, 141, 173, 197
CviKI_1 RGCY 6 cut(s) 32, 107, 129, 141, 173, 197
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 34, 142
EcoICRI GAGCTC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 60, 161
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 190, 255
FaiI YATR 5 cut(s) 68, 78, 188, 194, 253
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 186, 251
Fnu4HI GCNGC 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 190, 255
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 82
Hpy188III TCNNGA 4 cut(s) 56, 122, 144, 176
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 4, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 209
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 190, 255
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 47, 74, 148, 175, 189
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 27
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 1 cut(s) 166
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 13, 207
MnlI CCTC 5 cut(s) 43, 96, 129, 208, 238
MspR9I CCNGG 2 cut(s) 62, 163
MvaI CCWGG 2 cut(s) 62, 163
MwoI GCNNNNNNNGC 2 cut(s) 138, 209
NdeII GATC 1 cut(s) 146
NlaIII CATG 2 cut(s) 190, 255
NlaIV GGNNCC 2 cut(s) 59, 243
NmeAIII GCCGAG 1 cut(s) 238
NspV TTCGAA 1 cut(s) 85
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 60, 161
PspGI CCWGG 2 cut(s) 60, 161
PspN4I GGNNCC 2 cut(s) 59, 243
PspPI GGNCC 2 cut(s) 30, 58
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 146
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 2 cut(s) 30, 58
ScrFI CCNGG 2 cut(s) 62, 163
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 131, 143, 199
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 192, 201
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 2 cut(s) 13, 207
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 60, 161
TaqI TCGA 1 cut(s) 85
TasI AATT 2 cut(s) 13, 207
TfiI GAWTC 1 cut(s) 82
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.