Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 876 |
| Acc36I | ACCTGC | 2 cut(s) | 364, 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 12 |
| AccI | GTMKAC | 1 cut(s) | 448 |
| AciI | CCGC | 2 cut(s) | 1078, 1085 |
| AclWI | GGATC | 3 cut(s) | 1016, 1048, 1080 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 984 |
| AcuI | CTGAAG | 1 cut(s) | 732 |
| AdeI | CACNNNGTG | 1 cut(s) | 433 |
| AfaI | GTAC | 2 cut(s) | 491, 1036 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 12, 566, 1084 |
| AflII | CTTAAG | 1 cut(s) | 290 |
| AhlI | ACTAGT | 1 cut(s) | 1019 |
| AjnI | CCWGG | 1 cut(s) | 594 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 31, 659, 691 |
| AleI | CACNNNNGTG | 1 cut(s) | 677 |
| AluBI | AGCT | 4 cut(s) | 214, 710, 756, 866 |
| AluI | AGCT | 4 cut(s) | 214, 710, 756, 866 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| AlwI | GGATC | 3 cut(s) | 1016, 1048, 1080 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 707 |
| ApoI | RAATTY | 1 cut(s) | 984 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| AspA2I | CCTAGG | 1 cut(s) | 926 |
| AspLEI | GCGC | 1 cut(s) | 1053 |
| AspS9I | GGNCC | 1 cut(s) | 573 |
| AsuHPI | GGTGA | 4 cut(s) | 338, 691, 817, 1067 |
| AvaII | GGWCC | 1 cut(s) | 573 |
| AvrII | CCTAGG | 1 cut(s) | 926 |
| AxyI | CCTNAGG | 1 cut(s) | 909 |
| BaeGI | GKGCMC | 1 cut(s) | 407 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 1092 |
| BbsI | GAAGAC | 1 cut(s) | 756 |
| BbvI | GCAGC | 1 cut(s) | 719 |
| BccI | CCATC | 2 cut(s) | 191, 337 |
| BciT130I | CCWGG | 1 cut(s) | 596 |
| BciVI | GTATCC | 1 cut(s) | 123 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BcuI | ACTAGT | 1 cut(s) | 1019 |
| BfaI | CTAG | 6 cut(s) | 468, 789, 927, 998, 1020, 1056 |
| BfrI | CTTAAG | 1 cut(s) | 290 |
| BfuAI | ACCTGC | 2 cut(s) | 364, 511 |
| BfuI | GTATCC | 1 cut(s) | 123 |
| BglII | AGATCT | 1 cut(s) | 224 |
| BisI | GCNGC | 1 cut(s) | 708 |
| BlnI | CCTAGG | 1 cut(s) | 926 |
| BlsI | GCNGC | 1 cut(s) | 709 |
| BmcAI | AGTACT | 1 cut(s) | 1036 |
| Bme1390I | CCNGG | 1 cut(s) | 596 |
| Bme18I | GGWCC | 1 cut(s) | 573 |
| BmgT120I | GGNCC | 1 cut(s) | 573 |
| BmiI | GGNNCC | 2 cut(s) | 593, 1089 |
| BmrFI | CCNGG | 1 cut(s) | 596 |
| BmsI | GCATC | 5 cut(s) | 505, 694, 922, 984, 1116 |
| BoxI | GACNNNNGTC | 1 cut(s) | 728 |
| BpiI | GAAGAC | 1 cut(s) | 756 |
| BpmI | CTGGAG | 1 cut(s) | 181 |
| Bpu10I | CCTNAGC | 2 cut(s) | 360, 1068 |
| BsaJI | CCNNGG | 3 cut(s) | 71, 606, 926 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 12, 566, 1084 |
| Bse1I | ACTGG | 4 cut(s) | 17, 164, 619, 1042 |
| Bse21I | CCTNAGG | 1 cut(s) | 909 |
| BseBI | CCWGG | 1 cut(s) | 596 |
| BseDI | CCNNGG | 3 cut(s) | 71, 606, 926 |
| BseGI | GGATG | 4 cut(s) | 449, 520, 709, 937 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 12, 566, 1084 |
| BseMII | CTCAG | 4 cut(s) | 219, 404, 750, 900 |
| BseNI | ACTGG | 4 cut(s) | 17, 164, 619, 1042 |
| BseRI | GAGGAG | 3 cut(s) | 276, 539, 812 |
| BseSI | GKGCMC | 1 cut(s) | 407 |
| BseXI | GCAGC | 1 cut(s) | 719 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BslFI | GGGAC | 2 cut(s) | 736, 1073 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 12, 566, 1084 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsmFI | GGGAC | 2 cut(s) | 736, 1073 |
| BsmI | GAATGC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 2 cut(s) | 407, 1092 |
| Bsp143I | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| BspACI | CCGC | 2 cut(s) | 1078, 1085 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 4 cut(s) | 220, 403, 751, 901 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 2 cut(s) | 593, 1089 |
| BspMI | ACCTGC | 2 cut(s) | 364, 511 |
| BspPI | GGATC | 3 cut(s) | 1016, 1048, 1080 |
| BspQI | GCTCTTC | 1 cut(s) | 250 |
| BspTI | CTTAAG | 1 cut(s) | 290 |
| BsrI | ACTGG | 4 cut(s) | 17, 164, 619, 1042 |
| BssECI | CCNNGG | 3 cut(s) | 71, 606, 926 |
| BssMI | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| BssT1I | CCWWGG | 3 cut(s) | 71, 606, 926 |
| Bst2UI | CCWGG | 1 cut(s) | 596 |
| Bst6I | CTCTTC | 2 cut(s) | 250, 1120 |
| BstAFI | CTTAAG | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 2 cut(s) | 262, 463 |
| BstDEI | CTNAG | 7 cut(s) | 228, 278, 360, 390, 759, 909, 1068 |
| BstF5I | GGATG | 4 cut(s) | 449, 520, 709, 937 |
| BstHHI | GCGC | 1 cut(s) | 1053 |
| BstKTI | GATC | 5 cut(s) | 227, 273, 1011, 1043, 1075 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| BstNI | CCWGG | 1 cut(s) | 596 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 728 |
| BstSCI | CCNGG | 1 cut(s) | 594 |
| BstSLI | GKGCMC | 1 cut(s) | 407 |
| BstV1I | GCAGC | 1 cut(s) | 719 |
| BstV2I | GAAGAC | 1 cut(s) | 756 |
| BstX2I | RGATCY | 2 cut(s) | 224, 1008 |
| BstYI | RGATCY | 2 cut(s) | 224, 1008 |
| Bsu36I | CCTNAGG | 1 cut(s) | 909 |
| BsuI | GTATCC | 1 cut(s) | 123 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgZI | GCGATG | 1 cut(s) | 1093 |
| BtsCI | GGATG | 4 cut(s) | 449, 520, 709, 937 |
| BtsI | GCAGTG | 1 cut(s) | 942 |
| BtsIMutI | CAGTG | 1 cut(s) | 942 |
| BveI | ACCTGC | 2 cut(s) | 364, 511 |
| Cac8I | GCNNGC | 2 cut(s) | 262, 463 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 1053 |
| Cfr13I | GGNCC | 1 cut(s) | 573 |
| Csp6I | GTAC | 2 cut(s) | 490, 1035 |
| CviAII | CATG | 6 cut(s) | 265, 311, 484, 1030, 1063, 1081 |
| CviQI | GTAC | 2 cut(s) | 490, 1035 |
| DdeI | CTNAG | 7 cut(s) | 228, 278, 360, 390, 759, 909, 1068 |
| DpnI | GATC | 5 cut(s) | 226, 272, 1010, 1042, 1074 |
| DpnII | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| DraIII | CACNNNGTG | 1 cut(s) | 433 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 250, 1120 |
| EarI | CTCTTC | 2 cut(s) | 250, 1120 |
| EciI | GGCGGA | 1 cut(s) | 1100 |
| Eco130I | CCWWGG | 3 cut(s) | 71, 606, 926 |
| Eco24I | GRGCYC | 1 cut(s) | 1092 |
| Eco47I | GGWCC | 1 cut(s) | 573 |
| Eco57I | CTGAAG | 1 cut(s) | 732 |
| Eco81I | CCTNAGG | 1 cut(s) | 909 |
| EcoRII | CCWGG | 1 cut(s) | 594 |
| EcoT14I | CCWWGG | 3 cut(s) | 71, 606, 926 |
| EcoT38I | GRGCYC | 1 cut(s) | 1092 |
| ErhI | CCWWGG | 3 cut(s) | 71, 606, 926 |
| FaeI | CATG | 6 cut(s) | 268, 314, 487, 1033, 1066, 1084 |
| FaqI | GGGAC | 2 cut(s) | 736, 1073 |
| FatI | CATG | 6 cut(s) | 264, 310, 483, 1029, 1062, 1080 |
| FauNDI | CATATG | 1 cut(s) | 376 |
| FblI | GTMKAC | 1 cut(s) | 448 |
| Fnu4HI | GCNGC | 1 cut(s) | 708 |
| FokI | GGATG | 4 cut(s) | 456, 527, 716, 944 |
| FriOI | GRGCYC | 1 cut(s) | 1092 |
| Fsp4HI | GCNGC | 1 cut(s) | 708 |
| FspBI | CTAG | 6 cut(s) | 468, 789, 927, 998, 1020, 1056 |
| GlaI | GCGC | 1 cut(s) | 1052 |
| GluI | GCNGC | 1 cut(s) | 708 |
| GsuI | CTGGAG | 1 cut(s) | 181 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HhaI | GCGC | 1 cut(s) | 1053 |
| Hin1II | CATG | 6 cut(s) | 268, 314, 487, 1033, 1066, 1084 |
| Hin6I | GCGC | 1 cut(s) | 1051 |
| HinP1I | GCGC | 1 cut(s) | 1051 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 4 cut(s) | 283, 450, 534, 779 |
| HphI | GGTGA | 4 cut(s) | 338, 691, 817, 1067 |
| Hpy166II | GTNNAC | 4 cut(s) | 353, 449, 490, 940 |
| Hpy188I | TCNGA | 6 cut(s) | 229, 393, 455, 476, 760, 1008 |
| Hpy188III | TCNNGA | 4 cut(s) | 187, 311, 908, 1044 |
| Hpy8I | GTNNAC | 4 cut(s) | 353, 449, 490, 940 |
| HpyAV | CCTTC | 7 cut(s) | 126, 184, 317, 582, 707, 769, 1097 |
| HpyCH4IV | ACGT | 1 cut(s) | 579 |
| HpyCH4V | TGCA | 7 cut(s) | 25, 62, 236, 264, 461, 707, 935 |
| HpyF3I | CTNAG | 7 cut(s) | 228, 278, 360, 390, 759, 909, 1068 |
| HpySE526I | ACGT | 1 cut(s) | 579 |
| Hsp92II | CATG | 6 cut(s) | 268, 314, 487, 1033, 1066, 1084 |
| HspAI | GCGC | 1 cut(s) | 1051 |
| Kzo9I | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| LguI | GCTCTTC | 1 cut(s) | 250 |
| LmnI | GCTCC | 1 cut(s) | 1087 |
| Lsp1109I | GCAGC | 1 cut(s) | 719 |
| LweI | GCATC | 5 cut(s) | 505, 694, 922, 984, 1116 |
| MaeI | CTAG | 6 cut(s) | 468, 789, 927, 998, 1020, 1056 |
| MaeII | ACGT | 1 cut(s) | 579 |
| MaeIII | GTNAC | 2 cut(s) | 610, 737 |
| MalI | GATC | 5 cut(s) | 226, 272, 1010, 1042, 1074 |
| MboI | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| MflI | RGATCY | 2 cut(s) | 224, 1008 |
| MhlI | GDGCHC | 2 cut(s) | 407, 1092 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 26, 829, 969, 984 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 277, 444, 773 |
| MmeI | TCCRAC | 1 cut(s) | 551 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 210, 291, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 677 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 710 |
| MspCI | CTTAAG | 1 cut(s) | 290 |
| MspR9I | CCNGG | 1 cut(s) | 596 |
| Mva1269I | GAATGC | 1 cut(s) | 238 |
| MvaI | CCWGG | 1 cut(s) | 596 |
| NdeI | CATATG | 1 cut(s) | 376 |
| NdeII | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| NlaIII | CATG | 6 cut(s) | 268, 314, 487, 1033, 1066, 1084 |
| NlaIV | GGNNCC | 2 cut(s) | 593, 1089 |
| NmuCI | GTSAC | 1 cut(s) | 737 |
| OliI | CACNNNNGTG | 1 cut(s) | 677 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PciSI | GCTCTTC | 1 cut(s) | 250 |
| PctI | GAATGC | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 534 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 12 |
| PkrI | GCNGC | 1 cut(s) | 709 |
| PleI | GAGTC | 3 cut(s) | 277, 444, 773 |
| PpsI | GAGTC | 3 cut(s) | 277, 444, 773 |
| PshAI | GACNNNNGTC | 1 cut(s) | 728 |
| PsiI | TTATAA | 1 cut(s) | 876 |
| Psp6I | CCWGG | 1 cut(s) | 594 |
| PspGI | CCWGG | 1 cut(s) | 594 |
| PspN4I | GGNNCC | 2 cut(s) | 593, 1089 |
| PspPI | GGNCC | 1 cut(s) | 573 |
| PsuI | RGATCY | 2 cut(s) | 224, 1008 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 2 cut(s) | 491, 1036 |
| RsaNI | GTAC | 2 cut(s) | 490, 1035 |
| RseI | CAYNNNNRTG | 1 cut(s) | 677 |
| SapI | GCTCTTC | 1 cut(s) | 250 |
| SaqAI | TTAA | 3 cut(s) | 210, 291, 771 |
| SatI | GCNGC | 1 cut(s) | 708 |
| Sau3AI | GATC | 5 cut(s) | 224, 270, 1008, 1040, 1072 |
| Sau96I | GGNCC | 1 cut(s) | 573 |
| ScaI | AGTACT | 1 cut(s) | 1036 |
| SchI | GAGTC | 3 cut(s) | 277, 444, 773 |
| ScrFI | CCNGG | 1 cut(s) | 596 |
| SduI | GDGCHC | 2 cut(s) | 407, 1092 |
| SfaNI | GCATC | 5 cut(s) | 505, 694, 922, 984, 1116 |
| SinI | GGWCC | 1 cut(s) | 573 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 677 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| SpeI | ACTAGT | 1 cut(s) | 1019 |
| Sse9I | AATT | 4 cut(s) | 26, 829, 969, 984 |
| SsiI | CCGC | 2 cut(s) | 1078, 1085 |
| SspMI | CTAG | 6 cut(s) | 468, 789, 927, 998, 1020, 1056 |
| StyD4I | CCNGG | 1 cut(s) | 594 |
| StyI | CCWWGG | 3 cut(s) | 71, 606, 926 |
| TaiI | ACGT | 1 cut(s) | 582 |
| TasI | AATT | 4 cut(s) | 26, 829, 969, 984 |
| TatI | WGTACW | 2 cut(s) | 489, 1034 |
| TfiI | GAWTC | 1 cut(s) | 534 |
| Tru1I | TTAA | 3 cut(s) | 210, 291, 771 |
| Tru9I | TTAA | 3 cut(s) | 210, 291, 771 |
| TscAI | CASTG | 1 cut(s) | 942 |
| TseFI | GTSAC | 1 cut(s) | 737 |
| TseI | GCWGC | 1 cut(s) | 707 |
| Tsp45I | GTSAC | 1 cut(s) | 737 |
| TspDTI | ATGAA | 5 cut(s) | 196, 299, 336, 393, 759 |
| TspGWI | ACGGA | 2 cut(s) | 324, 1112 |
| TspRI | CASTG | 1 cut(s) | 942 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 12 |
| Vha464I | CTTAAG | 1 cut(s) | 290 |
| VpaK11BI | GGWCC | 1 cut(s) | 573 |
| XapI | RAATTY | 1 cut(s) | 984 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 156, 190 |
| XmaJI | CCTAGG | 1 cut(s) | 926 |
| XmiI | GTMKAC | 1 cut(s) | 448 |
| XspI | CTAG | 6 cut(s) | 468, 789, 927, 998, 1020, 1056 |
| ZrmI | AGTACT | 1 cut(s) | 1036 |