Prupe.1G148300_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000182
Physical Location & Seq
Reverse (-)
11621064 .. 11627392
6329 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G148300.1

Sequence Viewer

Length: 1566 bp
ATGAAAAGAGAGAAAGAGAAACTCTGGGGAGGAAAAGAGGGAAAGGGAACTAGGGCACAATTAGGACTCAAAAATTTGGGGATCTGGAAAATTAGGAAAAGGAAACGGAGTCGAAAGGAAAGGATAAGGCATTATTCGCAGCAAACGGAAGAGGAATTCAAAAGATACCATCTCTATCTTGTTGGATGTGGCCCAATTGGGATTTTTCATTCAGACAGCACGCAATCAAAGAAACTTGGCTGGTACTACAAAACCCTTTGCTGGAAAAGAGAGGAAGATCACCAAAAGTCGGCGGTGAAGAACCCGATGGTGTCAGTTGAACATCTCGTGAGTGTGCCGGAATTCAGTGATTGGGGAAGGGATCTATTCTACTGTTATTTCCCTATTTTAAAGTCTGATAATTATTACTTGCTAATGCTTTGGCTAACTTTTATCCAATCTAATGGTCAGGATGGCCTGAAGAACATCAAAGACTTGTTTTGCTGGGTAAACCAGCTGAGAAAGAAGGCGTGTGTTGCTGCTGGTTGGCATTCTCAAAATCTTGGGGAAGTTCTTTCTCTGTCACTTAAAAACTCTTGCATGCATTGGTGGTGTGGTCTTTGCAATCATCATTGTTACATATCTGCGCCCACTATTTATACTGTGTTGTGGCTGTGGTTTTTCATATGCTCCCCAGTATTCCTTACCTGTTATTGTTGGTCTTGTGTCCTGTTTTGCTCTTTTGAAATGAATCCTCAACTTGTTGCTAACTCCTCCCATACTAGATCTCGTAGCTCGAGTCCTAGAGCTCCCCCCAAACCTGCTAGGAATTCTCTTCTTGCACCTTCCATTATTCAAAGGGGCCGGTTCACCTTCACTATGGAAAATAACGAAACCAGAGTCTCAACCACTGCCCTTGCTTCTAGTGTTCAAGGTCACTTTGAATCCTTTTGCCTGGTTGGGAAGGTCTTTGGCGTCCCTGCCCCTAGGAGGGCTATTAGAAATTGCCTGAAAAGTGACTGGAAAAACCTGCAGGATGAAGTCTATGTTGATCATATTGGCAGAGATTGGTATAAGATTGAATTCTACTGTGAGGAAGATGTTGAGCATGTTATGAAGAATAGGCCTTGGTTTGTTCAGGGTCAAATCTTTGCCCTTCAAAGATGGAGGCCGGATTTTTCCCCTTTTCATGCTACGGTCGAGTCCATTGTTTTTTGGGCCAGAATTCCCTTTTTACCATTACACTATAAGGACCCTAAAGTGCTTAGTGATTTGGTCTCCATTCTTGGGACCCCAATTAGTATCGACCAAGCTTCTATGATCGGTAAGCAGAGCATGTTTGTTCGTGTCTGCCTGGAGGTCGATTTAATCAAACCATTGAAGAGGTGTTTGATTTTGGGAGAGGGCCCCAAGGAAACTCGTATTTTTATCAGCTATGAAGACCTCTTTGCAATCTATTTTTATTGCAGCCAGAAGAAAGAGCCCGGACATATTTGCCCTATCAAAATATCCAACAAAAATTACCTGCAGGTGGAAAGGCTGAATAATGAACCGAAATTCTTCCCTAAAAACCTGGTTATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

522

Amino Acids

60.94

Weight (kDa)

9.26

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1498
Acc36I ACCTGC 4 cut(s) 808, 1017, 1498, 1512
AciI CCGC 1 cut(s) 293
AclWI GGATC 2 cut(s) 89, 369
AcsI RAATTY 7 cut(s) 73, 155, 341, 808, 1061, 1203, 1535
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 954
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 7 cut(s) 261, 289, 969, 970, 1266, 1510, 1558
AgsI TTSAA 9 cut(s) 160, 320, 725, 836, 911, 923, 1061, 1139, 1360
AjnI CCWGG 3 cut(s) 933, 1332, 1551
AluBI AGCT 5 cut(s) 496, 774, 788, 1292, 1413
AluI AGCT 5 cut(s) 496, 774, 788, 1292, 1413
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 2 cut(s) 886, 1261
AlwI GGATC 2 cut(s) 89, 369
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 7 cut(s) 190, 454, 841, 1103, 1148, 1197, 1384
ApaI GGGCCC 1 cut(s) 1388
ApeKI GCWGC 3 cut(s) 139, 518, 1446
ApoI RAATTY 7 cut(s) 73, 155, 341, 808, 1061, 1203, 1535
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
Asp700I GAANNNNTTC 1 cut(s) 1538
AspA2I CCTAGG 1 cut(s) 965
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 7 cut(s) 191, 841, 1197, 1231, 1269, 1384, 1385
AsuC2I CCSGG 1 cut(s) 1464
AsuHPI GGTGA 3 cut(s) 272, 307, 841
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 2 cut(s) 1231, 1269
AvrII CCTAGG 1 cut(s) 965
BaeGI GKGCMC 2 cut(s) 58, 1388
BanII GRGCYC 3 cut(s) 790, 1388, 1464
BauI CACGAG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 1425
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 3 cut(s) 151, 505, 1458
BccI CCATC 4 cut(s) 177, 301, 446, 1137
BciT130I CCWGG 3 cut(s) 935, 1334, 1553
BclI TGATCA 1 cut(s) 1030
BcnI CCSGG 1 cut(s) 1464
BcoDI GTCTC 2 cut(s) 886, 1261
BfaI CTAG 6 cut(s) 51, 762, 783, 804, 903, 966
BfmI CTRYAG 2 cut(s) 1010, 1505
BfuAI ACCTGC 4 cut(s) 808, 1017, 1498, 1512
BglII AGATCT 1 cut(s) 764
BisI GCNGC 3 cut(s) 140, 519, 1447
BlnI CCTAGG 1 cut(s) 965
BlsI GCNGC 3 cut(s) 141, 520, 1448
Bme1390I CCNGG 4 cut(s) 935, 1334, 1464, 1553
Bme18I GGWCC 2 cut(s) 1231, 1269
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 7 cut(s) 191, 841, 1197, 1231, 1269, 1384, 1385
BmiI GGNNCC 6 cut(s) 842, 1233, 1270, 1271, 1386, 1387
BmrFI CCNGG 4 cut(s) 935, 1334, 1464, 1553
BmrI ACTGGG 1 cut(s) 668
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 1425
BpmI CTGGAG 1 cut(s) 1355
BpuMI CCSGG 1 cut(s) 1464
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 1261
BsaJI CCNNGG 3 cut(s) 965, 1106, 1389
Bsc4I CCNNNNNNNGG 7 cut(s) 261, 289, 969, 970, 1266, 1510, 1558
Bse118I RCCGGY 1 cut(s) 843
Bse1I ACTGG 2 cut(s) 674, 1004
BseBI CCWGG 3 cut(s) 935, 1334, 1553
BseDI CCNNGG 3 cut(s) 965, 1106, 1389
BseGI GGATG 3 cut(s) 191, 457, 1021
BseLI CCNNNNNNNGG 7 cut(s) 261, 289, 969, 970, 1266, 1510, 1558
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 2 cut(s) 674, 1004
BseRI GAGGAG 1 cut(s) 742
BseSI GKGCMC 2 cut(s) 58, 1388
BseXI GCAGC 3 cut(s) 151, 505, 1458
BseYI CCCAGC 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 1179
BshFI GGCC 7 cut(s) 192, 456, 843, 1105, 1150, 1199, 1386
BsiEI CGRYCG 1 cut(s) 1179
BsiHKAI GWGCWC 1 cut(s) 790
BsiHKCI CYCGRG 1 cut(s) 775
BsiSI CCGG 4 cut(s) 338, 844, 1151, 1464
BslFI GGGAC 2 cut(s) 941, 1282
BslI CCNNNNNNNGG 7 cut(s) 261, 289, 969, 970, 1266, 1510, 1558
BsmAI GTCTC 2 cut(s) 886, 1261
BsmFI GGGAC 2 cut(s) 941, 1282
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 7 cut(s) 192, 456, 843, 1105, 1150, 1199, 1386
Bso31I GGTCTC 1 cut(s) 1261
BsoBI CYCGRG 1 cut(s) 775
Bsp120I GGGCCC 1 cut(s) 1384
Bsp1286I GDGCHC 4 cut(s) 58, 790, 1388, 1464
Bsp143I GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
BspACI CCGC 1 cut(s) 293
BspANI GGCC 7 cut(s) 192, 456, 843, 1105, 1150, 1199, 1386
BspCNI CTCAG 1 cut(s) 489
BspLI GGNNCC 6 cut(s) 842, 1233, 1270, 1271, 1386, 1387
BspMAI CTGCAG 2 cut(s) 1014, 1509
BspMI ACCTGC 4 cut(s) 808, 1017, 1498, 1512
BspPI GGATC 2 cut(s) 89, 369
BspTNI GGTCTC 1 cut(s) 1261
BsrFI RCCGGY 1 cut(s) 843
BsrI ACTGG 2 cut(s) 674, 1004
BssAI RCCGGY 1 cut(s) 843
BssECI CCNNGG 3 cut(s) 965, 1106, 1389
BssMI GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
BssNI GRCGYC 1 cut(s) 954
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 3 cut(s) 965, 1106, 1389
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 3 cut(s) 935, 1334, 1553
Bst4CI ACNGT 4 cut(s) 374, 643, 1070, 1177
Bst6I CTCTTC 3 cut(s) 144, 819, 1355
BstACI GRCGYC 1 cut(s) 954
BstC8I GCNNGC 2 cut(s) 221, 581
BstDEI CTNAG 2 cut(s) 497, 1244
BstF5I GGATG 3 cut(s) 191, 457, 1021
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 6 cut(s) 84, 280, 364, 767, 1033, 1302
BstMAI GTCTC 2 cut(s) 886, 1261
BstMBI GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
BstMCI CGRYCG 1 cut(s) 1179
BstMWI GCNNNNNNNGC 2 cut(s) 136, 515
BstNI CCWGG 3 cut(s) 935, 1334, 1553
BstNSI RCATGY 3 cut(s) 583, 1091, 1318
BstSCI CCNGG 4 cut(s) 933, 1332, 1462, 1551
BstSFI CTRYAG 2 cut(s) 1010, 1505
BstSLI GKGCMC 2 cut(s) 58, 1388
BstV1I GCAGC 3 cut(s) 151, 505, 1458
BstV2I GAAGAC 1 cut(s) 1425
BstX2I RGATCY 3 cut(s) 81, 361, 764
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 3 cut(s) 81, 361, 764
BsuRI GGCC 7 cut(s) 192, 456, 843, 1105, 1150, 1199, 1386
BtsCI GGATG 3 cut(s) 191, 457, 1021
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 2 cut(s) 352, 888
BveI ACCTGC 4 cut(s) 808, 1017, 1498, 1512
Cac8I GCNNGC 2 cut(s) 221, 581
CfoI GCGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 843
Cfr13I GGNCC 7 cut(s) 191, 841, 1197, 1231, 1269, 1384, 1385
CseI GACGC 1 cut(s) 943
CsiI ACCWGGT 1 cut(s) 1551
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviAII CATG 4 cut(s) 580, 1088, 1169, 1315
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 497, 1244
DpnI GATC 6 cut(s) 83, 279, 363, 766, 1032, 1301
DpnII GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
DraI TTTAAA 1 cut(s) 390
Eam1104I CTCTTC 3 cut(s) 144, 819, 1355
EarI CTCTTC 3 cut(s) 144, 819, 1355
Ecl136II GAGCTC 1 cut(s) 788
Eco130I CCWWGG 3 cut(s) 965, 1106, 1389
Eco147I AGGCCT 1 cut(s) 1105
Eco24I GRGCYC 3 cut(s) 790, 1388, 1464
Eco31I GGTCTC 1 cut(s) 1261
Eco47I GGWCC 2 cut(s) 1231, 1269
Eco53kI GAGCTC 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 775
EcoICRI GAGCTC 1 cut(s) 788
EcoO109I RGGNCCY 4 cut(s) 1231, 1269, 1384, 1385
EcoRI GAATTC 5 cut(s) 155, 341, 808, 1061, 1203
EcoRII CCWGG 3 cut(s) 933, 1332, 1551
EcoT14I CCWWGG 3 cut(s) 965, 1106, 1389
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 3 cut(s) 790, 1388, 1464
ErhI CCWWGG 3 cut(s) 965, 1106, 1389
FaeI CATG 4 cut(s) 583, 1091, 1172, 1318
FaqI GGGAC 2 cut(s) 941, 1282
FatI CATG 4 cut(s) 579, 1087, 1168, 1314
FauNDI CATATG 1 cut(s) 665
FbaI TGATCA 1 cut(s) 1030
Fnu4HI GCNGC 3 cut(s) 140, 519, 1447
FokI GGATG 3 cut(s) 198, 464, 1028
FriOI GRGCYC 3 cut(s) 790, 1388, 1464
Fsp4HI GCNGC 3 cut(s) 140, 519, 1447
FspBI CTAG 6 cut(s) 51, 762, 783, 804, 903, 966
GlaI GCGC 1 cut(s) 627
GluI GCNGC 3 cut(s) 140, 519, 1447
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 1355
HaeIII GGCC 7 cut(s) 192, 456, 843, 1105, 1150, 1199, 1386
HapII CCGG 4 cut(s) 338, 844, 1151, 1464
HgaI GACGC 1 cut(s) 943
HhaI GCGC 1 cut(s) 628
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 4 cut(s) 583, 1091, 1172, 1318
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HindIII AAGCTT 1 cut(s) 1290
HinfI GANTC 7 cut(s) 66, 109, 730, 778, 879, 923, 1181
HpaII CCGG 4 cut(s) 338, 844, 1151, 1464
HphI GGTGA 3 cut(s) 272, 307, 841
Hpy166II GTNNAC 2 cut(s) 490, 849
Hpy188I TCNGA 2 cut(s) 214, 397
Hpy188III TCNNGA 3 cut(s) 85, 328, 449
Hpy8I GTNNAC 2 cut(s) 490, 849
HpyAV CCTTC 6 cut(s) 351, 499, 834, 862, 937, 1145
HpyCH4III ACNGT 4 cut(s) 374, 643, 1070, 1177
HpyCH4V TGCA 8 cut(s) 579, 583, 603, 821, 1012, 1430, 1446, 1507
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 515
HpyF3I CTNAG 2 cut(s) 497, 1244
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 4 cut(s) 583, 1091, 1172, 1318
HspAI GCGC 1 cut(s) 626
KflI GGGWCCC 1 cut(s) 1269
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
LmnI GCTCC 2 cut(s) 674, 793
Lsp1109I GCAGC 3 cut(s) 151, 505, 1458
MabI ACCWGGT 1 cut(s) 1551
MaeI CTAG 6 cut(s) 51, 762, 783, 804, 903, 966
MaeIII GTNAC 4 cut(s) 561, 614, 914, 995
MalI GATC 6 cut(s) 83, 279, 363, 766, 1032, 1301
MboI GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 3 cut(s) 81, 361, 764
MhlI GDGCHC 4 cut(s) 58, 790, 1388, 1464
MlyI GAGTC 5 cut(s) 60, 118, 787, 888, 1190
MmeI TCCRAC 2 cut(s) 163, 1515
Mph1103I ATGCAT 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 1538
MseI TTAA 4 cut(s) 389, 567, 1346, 1564
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 4 cut(s) 338, 844, 1151, 1464
MspR9I CCNGG 4 cut(s) 935, 1334, 1464, 1553
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 935, 1334, 1553
MwoI GCNNNNNNNGC 2 cut(s) 136, 515
NciI CCSGG 1 cut(s) 1464
NdeI CATATG 1 cut(s) 665
NdeII GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
NlaIII CATG 4 cut(s) 583, 1091, 1172, 1318
NlaIV GGNNCC 6 cut(s) 842, 1233, 1270, 1271, 1386, 1387
NmuCI GTSAC 3 cut(s) 561, 914, 995
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 3 cut(s) 583, 1091, 1318
PaeI GCATGC 1 cut(s) 583
PaeR7I CTCGAG 1 cut(s) 775
PaqCI CACCTGC 1 cut(s) 1498
PceI AGGCCT 1 cut(s) 1105
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 1538
PfeI GAWTC 2 cut(s) 730, 923
PkrI GCNGC 3 cut(s) 141, 520, 1448
PleI GAGTC 5 cut(s) 60, 117, 786, 887, 1189
PpsI GAGTC 5 cut(s) 60, 117, 786, 887, 1189
PpuMI RGGWCCY 2 cut(s) 1231, 1269
Psp124BI GAGCTC 1 cut(s) 790
Psp5II RGGWCCY 2 cut(s) 1231, 1269
Psp6I CCWGG 3 cut(s) 933, 1332, 1551
PspFI CCCAGC 1 cut(s) 483
PspGI CCWGG 3 cut(s) 933, 1332, 1551
PspN4I GGNNCC 6 cut(s) 842, 1233, 1270, 1271, 1386, 1387
PspOMI GGGCCC 1 cut(s) 1384
PspPI GGNCC 7 cut(s) 191, 841, 1197, 1231, 1269, 1384, 1385
PspPPI RGGWCCY 2 cut(s) 1231, 1269
PspXI VCTCGAGB 1 cut(s) 775
PstI CTGCAG 2 cut(s) 1014, 1509
PsuI RGATCY 3 cut(s) 81, 361, 764
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SacI GAGCTC 1 cut(s) 790
SaqAI TTAA 4 cut(s) 389, 567, 1346, 1564
SatI GCNGC 3 cut(s) 140, 519, 1447
Sau3AI GATC 6 cut(s) 81, 277, 361, 764, 1030, 1299
Sau96I GGNCC 7 cut(s) 191, 841, 1197, 1231, 1269, 1384, 1385
SbfI CCTGCAGG 2 cut(s) 1014, 1509
SchI GAGTC 5 cut(s) 60, 118, 787, 888, 1190
ScrFI CCNGG 4 cut(s) 935, 1334, 1464, 1553
SdaI CCTGCAGG 2 cut(s) 1014, 1509
SduI GDGCHC 4 cut(s) 58, 790, 1388, 1464
SexAI ACCWGGT 1 cut(s) 1551
SfcI CTRYAG 2 cut(s) 1010, 1505
Sfr274I CTCGAG 1 cut(s) 775
SinI GGWCC 2 cut(s) 1231, 1269
SlaI CTCGAG 1 cut(s) 775
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
SphI GCATGC 1 cut(s) 583
Sse8387I CCTGCAGG 2 cut(s) 1014, 1509
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 1 cut(s) 293
SspMI CTAG 6 cut(s) 51, 762, 783, 804, 903, 966
SstI GAGCTC 1 cut(s) 790
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 4 cut(s) 933, 1332, 1462, 1551
StyI CCWWGG 3 cut(s) 965, 1106, 1389
TaaI ACNGT 4 cut(s) 374, 643, 1070, 1177
TaqI TCGA 5 cut(s) 112, 776, 1179, 1284, 1341
TfiI GAWTC 2 cut(s) 730, 923
Tru1I TTAA 4 cut(s) 389, 567, 1346, 1564
Tru9I TTAA 4 cut(s) 389, 567, 1346, 1564
TscAI CASTG 2 cut(s) 352, 895
TseFI GTSAC 3 cut(s) 561, 914, 995
TseI GCWGC 3 cut(s) 139, 518, 1446
Tsp45I GTSAC 3 cut(s) 561, 914, 995
TspDTI ATGAA 9 cut(s) 17, 197, 652, 743, 1032, 1109, 1157, 1431, 1542
TspGWI ACGGA 2 cut(s) 121, 161
TspRI CASTG 2 cut(s) 352, 895
VpaK11BI GGWCC 2 cut(s) 1231, 1269
XapI RAATTY 7 cut(s) 73, 155, 341, 808, 1061, 1203, 1535
XceI RCATGY 3 cut(s) 583, 1091, 1318
XhoI CTCGAG 1 cut(s) 775
XmaJI CCTAGG 1 cut(s) 965
XmnI GAANNNNTTC 1 cut(s) 1538
XspI CTAG 6 cut(s) 51, 762, 783, 804, 903, 966
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.