Rh3BG373700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000182
Physical Location & Seq
Forward (+)
47253165 .. 47253494
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG373700.1

Sequence Viewer

Length: 330 bp
ATGGCCTTTAGCCCAAAAGCGCATGCTCATTCTCAAATCCCTCGTCGGTACTTCCCAGCCCCCCCTTTTTACCCCTTTCTTAGGAACTCTTTTGACACAAAACCTATTCCTGTCATGATTGGGGAACAAACCATTGCTATTGATAGATTTGCTGCTCATGTGGACATGCCATCCCCCCAGCTTGAGTTTGCATCTCACTATTCCAGACTTTGTCTTGTTGGCAAAGTCTTTAGATACAACATTCCTACTGAAGCTGTGATCATCCGGTTCAACGAAGGCTGGGCCAGCCTGCAAGGGATTTTCAACTTTCGTCCTTTGATCAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

9.65

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 271, 304
AluBI AGCT 2 cut(s) 181, 254
AluI AGCT 2 cut(s) 181, 254
AoxI GGCC 2 cut(s) 3, 282
ApeKI GCWGC 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 178
BclI TGATCA 2 cut(s) 258, 318
BfaI CTAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 282
BmsI GCATC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 132
BseGI GGATG 2 cut(s) 170, 261
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 3 cut(s) 55, 177, 279
BshFI GGCC 2 cut(s) 5, 284
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 2 cut(s) 5, 284
Bsp143I GATC 2 cut(s) 258, 318
BspANI GGCC 2 cut(s) 5, 284
BspHI TCATGA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 132
BssMI GATC 2 cut(s) 258, 318
BstC8I GCNNGC 3 cut(s) 24, 286, 290
BstDEI CTNAG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 170, 261
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 261, 321
BstMBI GATC 2 cut(s) 258, 318
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 26, 169
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 5, 284
BtsCI GGATG 2 cut(s) 170, 261
Cac8I GCNNGC 3 cut(s) 24, 286, 290
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 49
CviAII CATG 4 cut(s) 23, 115, 158, 166
CviJI RGCY 8 cut(s) 5, 12, 59, 181, 254, 279, 284, 288
CviKI_1 RGCY 8 cut(s) 5, 12, 59, 181, 254, 279, 284, 288
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 260, 320
DpnII GATC 2 cut(s) 258, 318
Eco57I CTGAAG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 79
FaeI CATG 4 cut(s) 26, 118, 161, 169
FaiI YATR 4 cut(s) 24, 116, 159, 167
FatI CATG 4 cut(s) 22, 114, 157, 165
FbaI TGATCA 2 cut(s) 258, 318
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 157, 248
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 328
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 3 cut(s) 59, 181, 283
HaeIII GGCC 2 cut(s) 5, 284
HapII CCGG 1 cut(s) 265
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 26, 118, 161, 169
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 115, 204
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 191, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 4 cut(s) 26, 118, 161, 169
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 2 cut(s) 258, 318
Kzo9I GATC 2 cut(s) 258, 318
LpnPI CCDG 8 cut(s) 69, 123, 191, 217, 265, 278, 298, 302
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 328
MalI GATC 2 cut(s) 260, 320
MboI GATC 2 cut(s) 258, 318
MnlI CCTC 1 cut(s) 51
MspI CCGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 2 cut(s) 258, 318
NlaIII CATG 4 cut(s) 26, 118, 161, 169
NspI RCATGY 2 cut(s) 26, 169
PaeI GCATGC 1 cut(s) 26
PagI TCATGA 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 154
PspFI CCCAGC 3 cut(s) 55, 177, 279
PspPI GGNCC 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 210
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 258, 318
Sau96I GGNCC 1 cut(s) 282
SetI ASST 3 cut(s) 106, 183, 256
SfaNI GCATC 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 328
TseI GCWGC 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 79
XceI RCATGY 2 cut(s) 26, 169
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.