Rh6AG260800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000182
Physical Location & Seq
Forward (+)
45265897 .. 45267048
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG260800.1

Sequence Viewer

Length: 1152 bp
ATGGCTTTCAGCCCCAACACCCAAGCCCAGGCAAATGCTTCTTCCTCTCGACGACCGTGTCCGTTTAAACCTTACTCTCTATTTCCCCGTGTTCCTACGGATAACTCCTTCCCTGTTAACTTTGGTGATGAAACTTTCCATATTGATCATACCCCAGCCTATGTGGATTTGTCGTCACCGCCCATTGGTTTTTTTGAACACTACTTAACCCAATGTGTAGTTGGCAAGCTCTTTGGCAAGAAACTTCCAACTGAAGTTGTGGTCAACCGCTATAAGGAAATGTGGTCTAACCTGGAAGGCAACTTCCAGATCAACAGGCTGATAAATCATTGGTTTGTTATAGAGTTCAGTGATGCTGATGACATTGATCGGGTCCTCAACAACAGGCCTTGGTTTATTGGTAGTCGTATCTTCCATTTACAAAGGTCGTATTATGGGTTTGATGCGGCATCTTCCCGCATTGAAAAACTTATTGTCTGGGTAAGGCTACCAAATCTTCCCCTCCCTTACTGGAATAAGGAGTCCTTAACTTCCCTGGCTCAACACATTGGTCGTTATGTTGGTGCTGATGAAAATACCTTACTAGTTAAGAAGTGCATGTTTGCTAGGGTCCTGATAGAGATTGATTTGTGTTTCCCTCTAAAACGCACGGTTCTTGCCAACAACAAATTAGGTAACCCGATCCACATTCTGGTCTCTTATGAGGTTCTCTATGAAGTTTGCTTTAGATGTGGTCATTACATTCAACGAAACCAAGTTCATTCCTGTCCTTTTAAGCTGTTCAATGATAATTTCTTTTTGGTTGAGCGATTTGACAATGACCATCCGGTTTATCCGGCTGAAATGGCCAAGTATGAGAATGTTAAGAGTCTATTTGCAGAACACTTTTCCTTGGTCTTTCCTCAACCTATTCCTGCTCCAACCCCTTTAGAAGGTGATAACTCTGCTGATGGAGCATCGTGGAAAATAGTGTCTCGAAAAGGAAAGGGTAAAGCCTTTACTTACCCAAAACAAGGGGCTATCCCTAATAATCAAAAAGCTTTGTTAAAGCTGGGTAAGTCTTTCAAGGAGGCAGTTGGTACTGATGGGGCTGCGCCCTCAGCGGTCCCCAAGAATAAGGAGGTGCTGGTTGTTTCTGATGAATCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

383

Amino Acids

43.53

Weight (kDa)

8.68

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 69 - 142 4.8e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 691
AciI CCGC 5 cut(s) 179, 268, 446, 457, 1103
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 1081
AfiI CCNNNNNNNGG 6 cut(s) 28, 185, 274, 691, 932, 1013
AgsI TTSAA 5 cut(s) 197, 464, 746, 784, 1066
AhlI ACTAGT 1 cut(s) 583
AjnI CCWGG 3 cut(s) 27, 291, 534
AluBI AGCT 4 cut(s) 229, 778, 1040, 1051
AluI AGCT 4 cut(s) 229, 778, 1040, 1051
Alw26I GTCTC 2 cut(s) 700, 978
AlwI GGATC 1 cut(s) 676
AoxI GGCC 2 cut(s) 386, 846
ApeKI GCWGC 1 cut(s) 1091
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 3 cut(s) 373, 610, 1105
AsuHPI GGTGA 3 cut(s) 137, 168, 947
AvaII GGWCC 3 cut(s) 373, 610, 1105
BalI TGGCCA 1 cut(s) 848
BbvCI CCTCAGC 1 cut(s) 1099
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 3 cut(s) 831, 944, 1079
BciT130I CCWGG 3 cut(s) 29, 293, 536
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 700, 978
BcuI ACTAGT 1 cut(s) 583
BfaI CTAG 2 cut(s) 584, 606
BisI GCNGC 2 cut(s) 447, 1092
BlsI GCNGC 2 cut(s) 448, 1093
Bme1390I CCNGG 3 cut(s) 29, 293, 536
Bme18I GGWCC 3 cut(s) 373, 610, 1105
BmgT120I GGNCC 3 cut(s) 373, 610, 1105
BmiI GGNNCC 3 cut(s) 374, 611, 1107
BmrFI CCNGG 3 cut(s) 29, 293, 536
BmsI GCATC 4 cut(s) 343, 433, 458, 965
Bpu10I CCTNAGC 1 cut(s) 1099
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 4 cut(s) 27, 389, 534, 891
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 185, 274, 691, 932, 1013
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 3 cut(s) 29, 293, 536
BseDI CCNNGG 4 cut(s) 27, 389, 534, 891
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 6 cut(s) 28, 185, 274, 691, 932, 1013
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 1078
BseYI CCCAGC 2 cut(s) 154, 1051
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 388, 848
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 827, 836
BslFI GGGAC 1 cut(s) 1091
BslI CCNNNNNNNGG 6 cut(s) 28, 185, 274, 691, 932, 1013
BsmAI GTCTC 2 cut(s) 700, 978
BsmFI GGGAC 1 cut(s) 1091
BsnI GGCC 2 cut(s) 388, 848
Bso31I GGTCTC 1 cut(s) 700
Bsp143I GATC 4 cut(s) 145, 309, 367, 681
BspACI CCGC 5 cut(s) 179, 268, 446, 457, 1103
BspANI GGCC 2 cut(s) 388, 848
BspCNI CTCAG 1 cut(s) 1112
BspLI GGNNCC 3 cut(s) 374, 611, 1107
BspPI GGATC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 700
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 4 cut(s) 27, 389, 534, 891
BssMI GATC 4 cut(s) 145, 309, 367, 681
BssT1I CCWWGG 2 cut(s) 389, 891
Bst2UI CCWGG 3 cut(s) 29, 293, 536
Bst4CI ACNGT 2 cut(s) 57, 652
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 1099
BstEII GGTNACC 1 cut(s) 674
BstENI CCTNNNNNAGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 823
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 4 cut(s) 148, 312, 370, 684
BstMAI GTCTC 2 cut(s) 700, 978
BstMBI GATC 4 cut(s) 145, 309, 367, 681
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 845, 953, 1100
BstNI CCWGG 3 cut(s) 29, 293, 536
BstNSI RCATGY 1 cut(s) 601
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 3 cut(s) 27, 291, 534
BstV1I GCAGC 1 cut(s) 1078
BsuRI GGCC 2 cut(s) 388, 848
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 3 cut(s) 373, 610, 1105
Csp6I GTAC 1 cut(s) 1080
CviAII CATG 1 cut(s) 598
CviQI GTAC 1 cut(s) 1080
DdeI CTNAG 1 cut(s) 1099
DpnI GATC 4 cut(s) 147, 311, 369, 683
DpnII GATC 4 cut(s) 145, 309, 367, 681
DraI TTTAAA 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 57
DseDI GACNNNNNNGTC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 846
Eco130I CCWWGG 2 cut(s) 389, 891
Eco147I AGGCCT 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 3 cut(s) 373, 610, 1105
Eco57I CTGAAG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 373, 610
EcoO65I GGTNACC 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 27, 291, 534
EcoT14I CCWWGG 2 cut(s) 389, 891
ErhI CCWWGG 2 cut(s) 389, 891
FaeI CATG 1 cut(s) 601
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 1 cut(s) 1091
FatI CATG 1 cut(s) 597
FauI CCCGC 1 cut(s) 464
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 447, 1092
FokI GGATG 1 cut(s) 810
Fsp4HI GCNGC 2 cut(s) 447, 1092
FspBI CTAG 2 cut(s) 584, 606
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 2 cut(s) 447, 1092
GsaI CCCAGC 2 cut(s) 158, 1055
HaeIII GGCC 2 cut(s) 388, 848
HapII CCGG 2 cut(s) 827, 836
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 1 cut(s) 601
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 2 cut(s) 118, 265
HindII GTYRAC 2 cut(s) 118, 265
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 3 cut(s) 521, 868, 1142
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 2 cut(s) 827, 836
HphI GGTGA 3 cut(s) 137, 168, 947
Hpy166II GTNNAC 2 cut(s) 118, 265
Hpy188I TCNGA 1 cut(s) 1138
Hpy188III TCNNGA 4 cut(s) 48, 307, 613, 975
Hpy8I GTNNAC 2 cut(s) 118, 265
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 118, 290, 926
HpyCH4III ACNGT 2 cut(s) 57, 652
HpyCH4V TGCA 2 cut(s) 597, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 845, 953, 1100
HpyF3I CTNAG 1 cut(s) 1099
Hsp92II CATG 1 cut(s) 601
HspAI GCGC 1 cut(s) 1094
Ksp22I TGATCA 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 145, 309, 367, 681
LmnI GCTCC 2 cut(s) 922, 953
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 4 cut(s) 343, 433, 458, 965
MaeI CTAG 2 cut(s) 584, 606
MaeIII GTNAC 2 cut(s) 174, 674
MalI GATC 4 cut(s) 147, 311, 369, 683
MboI GATC 4 cut(s) 145, 309, 367, 681
MboII GAAGA 4 cut(s) 33, 403, 444, 488
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 2 cut(s) 668, 790
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 2 cut(s) 530, 877
MmeI TCCRAC 2 cut(s) 272, 944
MnlI CCTC 9 cut(s) 55, 386, 512, 648, 697, 912, 1063, 1108, 1114
Mox20I TGGCCA 1 cut(s) 848
MscI TGGCCA 1 cut(s) 848
MseI TTAA 8 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 2 cut(s) 827, 836
MspR9I CCNGG 3 cut(s) 29, 293, 536
MssI GTTTAAAC 1 cut(s) 67
MvaI CCWGG 3 cut(s) 29, 293, 536
MwoI GCNNNNNNNGC 3 cut(s) 845, 953, 1100
NdeII GATC 4 cut(s) 145, 309, 367, 681
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 3 cut(s) 374, 611, 1107
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 601
PceI AGGCCT 1 cut(s) 388
PfeI GAWTC 1 cut(s) 1142
PflFI GACNNNGTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 2 cut(s) 448, 1093
PleI GAGTC 2 cut(s) 529, 876
PmeI GTTTAAAC 1 cut(s) 67
PpsI GAGTC 2 cut(s) 529, 876
PpuMI RGGWCCY 2 cut(s) 373, 610
Psp5II RGGWCCY 2 cut(s) 373, 610
Psp6I CCWGG 3 cut(s) 27, 291, 534
PspEI GGTNACC 1 cut(s) 674
PspFI CCCAGC 2 cut(s) 154, 1051
PspGI CCWGG 3 cut(s) 27, 291, 534
PspN4I GGNNCC 3 cut(s) 374, 611, 1107
PspPI GGNCC 3 cut(s) 373, 610, 1105
PspPPI RGGWCCY 2 cut(s) 373, 610
PsyI GACNNNGTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 1081
RsaNI GTAC 1 cut(s) 1080
SaqAI TTAA 8 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046
SatI GCNGC 2 cut(s) 447, 1092
Sau3AI GATC 4 cut(s) 145, 309, 367, 681
Sau96I GGNCC 3 cut(s) 373, 610, 1105
SchI GAGTC 2 cut(s) 530, 877
ScrFI CCNGG 3 cut(s) 29, 293, 536
SfaNI GCATC 4 cut(s) 343, 433, 458, 965
SinI GGWCC 3 cut(s) 373, 610, 1105
SpeI ACTAGT 1 cut(s) 583
Sse9I AATT 2 cut(s) 668, 790
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 5 cut(s) 179, 268, 446, 457, 1103
SspMI CTAG 2 cut(s) 584, 606
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 27, 291, 534
StyI CCWWGG 2 cut(s) 389, 891
TaaI ACNGT 2 cut(s) 57, 652
TaqI TCGA 2 cut(s) 49, 976
TasI AATT 2 cut(s) 668, 790
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 1142
Tru1I TTAA 8 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046
Tru9I TTAA 8 cut(s) 66, 117, 206, 527, 588, 774, 864, 1046
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 1 cut(s) 1091
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 4 cut(s) 144, 585, 729, 749
TspGWI ACGGA 2 cut(s) 51, 113
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 3 cut(s) 373, 610, 1105
XagI CCTNNNNNAGG 1 cut(s) 930
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XspI CTAG 2 cut(s) 584, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.