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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 286 |
| AccBSI | CCGCTC | 1 cut(s) | 422 |
| AciI | CCGC | 3 cut(s) | 337, 422, 606 |
| AclWI | GGATC | 3 cut(s) | 328, 704, 717 |
| AcoI | YGGCCR | 1 cut(s) | 486 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 246, 484, 542, 558 |
| AgsI | TTSAA | 4 cut(s) | 72, 235, 304, 706 |
| AjnI | CCWGG | 2 cut(s) | 289, 541 |
| AleI | CACNNNNGTG | 1 cut(s) | 292 |
| AluBI | AGCT | 5 cut(s) | 55, 68, 448, 587, 638 |
| AluI | AGCT | 5 cut(s) | 55, 68, 448, 587, 638 |
| Alw21I | GWGCWC | 1 cut(s) | 92 |
| AlwI | GGATC | 3 cut(s) | 328, 704, 717 |
| AoxI | GGCC | 2 cut(s) | 248, 486 |
| ApeKI | GCWGC | 1 cut(s) | 515 |
| AseI | ATTAAT | 1 cut(s) | 528 |
| AspA2I | CCTAGG | 2 cut(s) | 245, 671 |
| AspS9I | GGNCC | 2 cut(s) | 549, 668 |
| AsuC2I | CCSGG | 1 cut(s) | 693 |
| AsuHPI | GGTGA | 4 cut(s) | 264, 407, 413, 475 |
| AvaII | GGWCC | 2 cut(s) | 549, 668 |
| AvrII | CCTAGG | 2 cut(s) | 245, 671 |
| BanI | GGYRCC | 1 cut(s) | 286 |
| BanII | GRGCYC | 1 cut(s) | 414 |
| BbsI | GAAGAC | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 1 cut(s) | 92 |
| BbvI | GCAGC | 1 cut(s) | 527 |
| BccI | CCATC | 3 cut(s) | 392, 540, 563 |
| BciT130I | CCWGG | 2 cut(s) | 291, 543 |
| BcnI | CCSGG | 1 cut(s) | 693 |
| BfaI | CTAG | 4 cut(s) | 56, 246, 645, 672 |
| BisI | GCNGC | 1 cut(s) | 516 |
| BlnI | CCTAGG | 2 cut(s) | 245, 671 |
| BlsI | GCNGC | 1 cut(s) | 517 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 543, 693 |
| Bme18I | GGWCC | 2 cut(s) | 549, 668 |
| BmgT120I | GGNCC | 2 cut(s) | 549, 668 |
| BmiI | GGNNCC | 3 cut(s) | 288, 551, 669 |
| BmrFI | CCNGG | 3 cut(s) | 291, 543, 693 |
| BmsI | GCATC | 3 cut(s) | 94, 461, 487 |
| BpiI | GAAGAC | 1 cut(s) | 9 |
| BpmI | CTGGAG | 2 cut(s) | 65, 525 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| BpuMI | CCSGG | 1 cut(s) | 693 |
| BsaJI | CCNNGG | 4 cut(s) | 245, 290, 671, 692 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 411, 441, 553, 583 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 246, 484, 542, 558 |
| Bse118I | RCCGGY | 1 cut(s) | 484 |
| BseBI | CCWGG | 2 cut(s) | 291, 543 |
| BseDI | CCNNGG | 4 cut(s) | 245, 290, 671, 692 |
| BseGI | GGATG | 1 cut(s) | 551 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 246, 484, 542, 558 |
| BseMII | CTCAG | 2 cut(s) | 129, 588 |
| BseRI | GAGGAG | 1 cut(s) | 524 |
| BseXI | GCAGC | 1 cut(s) | 527 |
| BseYI | CCCAGC | 2 cut(s) | 317, 664 |
| BshFI | GGCC | 2 cut(s) | 250, 488 |
| BshNI | GGYRCC | 1 cut(s) | 286 |
| BsiHKAI | GWGCWC | 1 cut(s) | 92 |
| BsiSI | CCGG | 2 cut(s) | 485, 692 |
| BslFI | GGGAC | 4 cut(s) | 192, 330, 461, 681 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 246, 484, 542, 558 |
| BsmFI | GGGAC | 4 cut(s) | 192, 330, 461, 681 |
| BsmI | GAATGC | 1 cut(s) | 193 |
| BsnI | GGCC | 2 cut(s) | 250, 488 |
| Bsp1286I | GDGCHC | 2 cut(s) | 92, 414 |
| Bsp143I | GATC | 3 cut(s) | 333, 696, 709 |
| BspACI | CCGC | 3 cut(s) | 337, 422, 606 |
| BspANI | GGCC | 2 cut(s) | 250, 488 |
| BspCNI | CTCAG | 2 cut(s) | 130, 589 |
| BspLI | GGNNCC | 3 cut(s) | 288, 551, 669 |
| BspPI | GGATC | 3 cut(s) | 328, 704, 717 |
| BspT107I | GGYRCC | 1 cut(s) | 286 |
| BsrBI | CCGCTC | 1 cut(s) | 422 |
| BsrFI | RCCGGY | 1 cut(s) | 484 |
| BssAI | RCCGGY | 1 cut(s) | 484 |
| BssECI | CCNNGG | 4 cut(s) | 245, 290, 671, 692 |
| BssMI | GATC | 3 cut(s) | 333, 696, 709 |
| BssT1I | CCWWGG | 2 cut(s) | 245, 671 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 543 |
| Bst4CI | ACNGT | 1 cut(s) | 344 |
| Bst6I | CTCTTC | 1 cut(s) | 559 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 450 |
| BstDEI | CTNAG | 3 cut(s) | 119, 138, 597 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 540 |
| BstF5I | GGATG | 1 cut(s) | 551 |
| BstKTI | GATC | 3 cut(s) | 336, 699, 712 |
| BstMBI | GATC | 3 cut(s) | 333, 696, 709 |
| BstNI | CCWGG | 2 cut(s) | 291, 543 |
| BstSCI | CCNGG | 3 cut(s) | 289, 541, 691 |
| BstV1I | GCAGC | 1 cut(s) | 527 |
| BstV2I | GAAGAC | 1 cut(s) | 9 |
| BstX2I | RGATCY | 2 cut(s) | 333, 709 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 297, 723 |
| BstYI | RGATCY | 2 cut(s) | 333, 709 |
| BsuRI | GGCC | 2 cut(s) | 250, 488 |
| BtsCI | GGATG | 1 cut(s) | 551 |
| BtsI | GCAGTG | 1 cut(s) | 666 |
| BtsIMutI | CAGTG | 2 cut(s) | 594, 666 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 450 |
| Cfr10I | RCCGGY | 1 cut(s) | 484 |
| Cfr13I | GGNCC | 2 cut(s) | 549, 668 |
| CviAII | CATG | 3 cut(s) | 29, 172, 572 |
| DdeI | CTNAG | 3 cut(s) | 119, 138, 597 |
| DpnI | GATC | 3 cut(s) | 335, 698, 711 |
| DpnII | GATC | 3 cut(s) | 333, 696, 709 |
| EaeI | YGGCCR | 1 cut(s) | 486 |
| Eam1104I | CTCTTC | 1 cut(s) | 559 |
| EarI | CTCTTC | 1 cut(s) | 559 |
| Eco130I | CCWWGG | 2 cut(s) | 245, 671 |
| Eco24I | GRGCYC | 1 cut(s) | 414 |
| Eco47I | GGWCC | 2 cut(s) | 549, 668 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 540 |
| EcoO109I | RGGNCCY | 1 cut(s) | 668 |
| EcoRII | CCWGG | 2 cut(s) | 289, 541 |
| EcoT14I | CCWWGG | 2 cut(s) | 245, 671 |
| EcoT38I | GRGCYC | 1 cut(s) | 414 |
| ErhI | CCWWGG | 2 cut(s) | 245, 671 |
| FaeI | CATG | 3 cut(s) | 32, 175, 575 |
| FaqI | GGGAC | 4 cut(s) | 192, 330, 461, 681 |
| FatI | CATG | 3 cut(s) | 28, 171, 571 |
| Fnu4HI | GCNGC | 1 cut(s) | 516 |
| FokI | GGATG | 1 cut(s) | 558 |
| FriOI | GRGCYC | 1 cut(s) | 414 |
| Fsp4HI | GCNGC | 1 cut(s) | 516 |
| FspBI | CTAG | 4 cut(s) | 56, 246, 645, 672 |
| GluI | GCNGC | 1 cut(s) | 516 |
| GsaI | CCCAGC | 2 cut(s) | 321, 668 |
| GsuI | CTGGAG | 2 cut(s) | 65, 525 |
| HaeIII | GGCC | 2 cut(s) | 250, 488 |
| HapII | CCGG | 2 cut(s) | 485, 692 |
| Hin1II | CATG | 3 cut(s) | 32, 175, 575 |
| HpaII | CCGG | 2 cut(s) | 485, 692 |
| HphI | GGTGA | 4 cut(s) | 264, 407, 413, 475 |
| Hpy166II | GTNNAC | 2 cut(s) | 146, 430 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 139, 457 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 82, 559 |
| Hpy8I | GTNNAC | 2 cut(s) | 146, 430 |
| HpyAV | CCTTC | 5 cut(s) | 251, 279, 386, 546, 616 |
| HpyCH4III | ACNGT | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 3 cut(s) | 119, 138, 597 |
| Hsp92II | CATG | 3 cut(s) | 32, 175, 575 |
| Kzo9I | GATC | 3 cut(s) | 333, 696, 709 |
| LmnI | GCTCC | 1 cut(s) | 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 527 |
| LweI | GCATC | 3 cut(s) | 94, 461, 487 |
| MaeI | CTAG | 4 cut(s) | 56, 246, 645, 672 |
| MalI | GATC | 3 cut(s) | 335, 698, 711 |
| MbiI | CCGCTC | 1 cut(s) | 422 |
| MboI | GATC | 3 cut(s) | 333, 696, 709 |
| MboII | GAAGA | 5 cut(s) | 9, 17, 228, 367, 576 |
| MfeI | CAATTG | 1 cut(s) | 731 |
| MflI | RGATCY | 2 cut(s) | 333, 709 |
| MhlI | GDGCHC | 2 cut(s) | 92, 414 |
| MluCI | AATT | 1 cut(s) | 731 |
| MnlI | CCTC | 8 cut(s) | 145, 222, 382, 430, 502, 505, 543, 560 |
| MseI | TTAA | 2 cut(s) | 51, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 292 |
| MspA1I | CMGCKG | 1 cut(s) | 606 |
| MspI | CCGG | 2 cut(s) | 485, 692 |
| MspR9I | CCNGG | 3 cut(s) | 291, 543, 693 |
| MunI | CAATTG | 1 cut(s) | 731 |
| Mva1269I | GAATGC | 1 cut(s) | 193 |
| MvaI | CCWGG | 2 cut(s) | 291, 543 |
| NciI | CCSGG | 1 cut(s) | 693 |
| NdeII | GATC | 3 cut(s) | 333, 696, 709 |
| NlaIII | CATG | 3 cut(s) | 32, 175, 575 |
| NlaIV | GGNNCC | 3 cut(s) | 288, 551, 669 |
| OliI | CACNNNNGTG | 1 cut(s) | 292 |
| PctI | GAATGC | 1 cut(s) | 193 |
| PfoI | TCCNGGA | 1 cut(s) | 541 |
| PkrI | GCNGC | 1 cut(s) | 517 |
| PpuMI | RGGWCCY | 1 cut(s) | 668 |
| PshBI | ATTAAT | 1 cut(s) | 528 |
| Psp5II | RGGWCCY | 1 cut(s) | 668 |
| Psp6I | CCWGG | 2 cut(s) | 289, 541 |
| PspFI | CCCAGC | 2 cut(s) | 317, 664 |
| PspGI | CCWGG | 2 cut(s) | 289, 541 |
| PspN4I | GGNNCC | 3 cut(s) | 288, 551, 669 |
| PspPI | GGNCC | 2 cut(s) | 549, 668 |
| PspPPI | RGGWCCY | 1 cut(s) | 668 |
| PsuI | RGATCY | 2 cut(s) | 333, 709 |
| RseI | CAYNNNNRTG | 1 cut(s) | 292 |
| SaqAI | TTAA | 2 cut(s) | 51, 528 |
| SatI | GCNGC | 1 cut(s) | 516 |
| Sau3AI | GATC | 3 cut(s) | 333, 696, 709 |
| Sau96I | GGNCC | 2 cut(s) | 549, 668 |
| ScrFI | CCNGG | 3 cut(s) | 291, 543, 693 |
| SduI | GDGCHC | 2 cut(s) | 92, 414 |
| SfaNI | GCATC | 3 cut(s) | 94, 461, 487 |
| SinI | GGWCC | 2 cut(s) | 549, 668 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 292 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 1 cut(s) | 731 |
| SsiI | CCGC | 3 cut(s) | 337, 422, 606 |
| SspMI | CTAG | 4 cut(s) | 56, 246, 645, 672 |
| StyD4I | CCNGG | 3 cut(s) | 289, 541, 691 |
| StyI | CCWWGG | 2 cut(s) | 245, 671 |
| TaaI | ACNGT | 1 cut(s) | 344 |
| TaqI | TCGA | 1 cut(s) | 214 |
| TasI | AATT | 1 cut(s) | 731 |
| Tru1I | TTAA | 2 cut(s) | 51, 528 |
| Tru9I | TTAA | 2 cut(s) | 51, 528 |
| TscAI | CASTG | 2 cut(s) | 601, 666 |
| TseI | GCWGC | 1 cut(s) | 515 |
| TspDTI | ATGAA | 2 cut(s) | 276, 627 |
| TspRI | CASTG | 2 cut(s) | 601, 666 |
| VpaK11BI | GGWCC | 2 cut(s) | 549, 668 |
| VspI | ATTAAT | 1 cut(s) | 528 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 540 |
| XmaJI | CCTAGG | 2 cut(s) | 245, 671 |
| XspI | CTAG | 4 cut(s) | 56, 246, 645, 672 |