Rh6BG074900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000182
Physical Location & Seq
Forward (+)
11535236 .. 11549415
14180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG074900.1

Sequence Viewer

Length: 654 bp
ATGTCAAGAATATATGTATCTGGGTTTGAGTTGTTCCCGTGGCGGATTCAGGTGGTGGCGAGCTCTGCTGCTCATTTTAGTGCTGTCCAATCCGTGCGGCCCAGATTTGTTTCTGGAGAAAATGGGCATCTGGGATTTCGTCAGCTCGACCCGATCAGGCAGACCCGGCACCACAAACGGCTCCGAATCGGAACCCAGTTTCTCGTGCGGCCGAAATCGGCTGACATTGTGCATGACGCAGCGGGAGAAGAACCCATTTCCGTTGAAGACGATCCTCCTGATTCCGAGGGAGTCGATGAGGTCAGAGGCCCAGCGGTGGAAGATGTCGATGACGATGCAGTCGGGAGGGTATTGGGTGAGGAATTGCTTGAGGGGCTGTTGGAAGACGGAGGTGTCGGTGAAGGGGGCGGCGGACATGGAGGTGTCGGGGGGAGCGGCGTCGTTTGGGAGGTCGAGGACGTGGATGGTGATTCGGCGGTTGAGGGTTTGGTCGCGGTGGATGGAGTTGCGGAAGCGGAGGGCGTTGGAGAGAGTGGTGGAGAGGATGGTGGACTTGGCGCCGTGGCTGGCGAAGACTCGGGCGGTGTCGATCATCGGGATTTGGTGGCCGCCGCCGACGAAGGGGAAGAAGTACATTTCAACTGGAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

22.69

Weight (kDa)

4.32

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 338, 392
AccB1I GGYRCC 2 cut(s) 168, 557
AccBSI CCGCTC 1 cut(s) 435
AccII CGCG 1 cut(s) 494
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 2 cut(s) 209, 606
AcyI GRCGYC 2 cut(s) 438, 558
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 2 cut(s) 316, 621
AgsI TTSAA 2 cut(s) 266, 640
AjiI CACGTC 1 cut(s) 460
AluBI AGCT 2 cut(s) 63, 145
AluI AGCT 2 cut(s) 63, 145
Alw21I GWGCWC 1 cut(s) 65
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 577
AoxI GGCC 4 cut(s) 98, 209, 307, 606
ApeKI GCWGC 2 cut(s) 68, 239
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 99, 308
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 368, 410, 479
AvaI CYCGRG 1 cut(s) 577
BanI GGYRCC 2 cut(s) 168, 557
BanII GRGCYC 1 cut(s) 65
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 3 cut(s) 273, 390, 579
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 55, 251
BccI CCATC 3 cut(s) 458, 494, 539
BceAI ACGGC 2 cut(s) 194, 545
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BcnI CCSGG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 561
BisI GCNGC 8 cut(s) 69, 98, 209, 240, 409, 436, 609, 612
BlsI GCNGC 8 cut(s) 70, 99, 210, 241, 410, 437, 610, 613
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 99, 308
BmiI GGNNCC 4 cut(s) 170, 182, 193, 559
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 136, 325
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 3 cut(s) 273, 390, 579
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 438, 558
BsaJI CCNNGG 3 cut(s) 38, 285, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 621
Bse1I ACTGG 2 cut(s) 196, 647
BseDI CCNNGG 3 cut(s) 38, 285, 561
BseGI GGATG 3 cut(s) 469, 505, 550
BseLI CCNNNNNNNGG 2 cut(s) 316, 621
BseNI ACTGG 2 cut(s) 196, 647
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 55, 251
BseYI CCCAGC 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 494
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 4 cut(s) 100, 211, 309, 608
BshNI GGYRCC 2 cut(s) 168, 557
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 577
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 316, 621
BsnI GGCC 4 cut(s) 100, 211, 309, 608
BsoBI CYCGRG 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 153, 271, 589
BspANI GGCC 4 cut(s) 100, 211, 309, 608
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 4 cut(s) 170, 182, 193, 559
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 168, 557
BsrBI CCGCTC 1 cut(s) 435
BsrI ACTGG 2 cut(s) 196, 647
BssECI CCNNGG 3 cut(s) 38, 285, 561
BssMI GATC 3 cut(s) 153, 271, 589
BssNI GRCGYC 2 cut(s) 438, 558
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
BstACI GRCGYC 2 cut(s) 438, 558
BstC8I GCNNGC 2 cut(s) 61, 568
BstDSI CCRYGG 2 cut(s) 38, 561
BstF5I GGATG 3 cut(s) 469, 505, 550
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 3 cut(s) 156, 274, 592
BstMBI GATC 3 cut(s) 153, 271, 589
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 3 cut(s) 65, 166, 373
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 55, 251
BstV2I GAAGAC 3 cut(s) 273, 390, 579
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 4 cut(s) 100, 211, 309, 608
BtgI CCRYGG 2 cut(s) 38, 561
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 3 cut(s) 469, 505, 550
Cac8I GCNNGC 2 cut(s) 61, 568
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 99, 308
CseI GACGC 2 cut(s) 245, 427
Csp6I GTAC 1 cut(s) 632
CviAII CATG 2 cut(s) 233, 416
CviQI GTAC 1 cut(s) 632
DinI GGCGCC 1 cut(s) 559
DpnI GATC 3 cut(s) 155, 273, 591
DpnII GATC 3 cut(s) 153, 271, 589
DrdI GACNNNNNNGTC 2 cut(s) 338, 392
DseDI GACNNNNNNGTC 2 cut(s) 338, 392
EaeI YGGCCR 2 cut(s) 209, 606
EagI CGGCCG 1 cut(s) 209
EciI GGCGGA 2 cut(s) 58, 426
Ecl136II GAGCTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 65
Eco52I CGGCCG 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 577
EcoICRI GAGCTC 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
FaeI CATG 2 cut(s) 236, 419
FaiI YATR 4 cut(s) 13, 15, 234, 417
FatI CATG 2 cut(s) 232, 415
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 8 cut(s) 69, 98, 209, 240, 409, 436, 609, 612
FokI GGATG 3 cut(s) 476, 512, 557
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 8 cut(s) 69, 98, 209, 240, 409, 436, 609, 612
GlaI GCGC 1 cut(s) 559
GluI GCNGC 8 cut(s) 69, 98, 209, 240, 409, 436, 609, 612
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 4 cut(s) 100, 211, 309, 608
HapII CCGG 1 cut(s) 166
HgaI GACGC 2 cut(s) 245, 427
HhaI GCGC 1 cut(s) 560
Hin1I GRCGYC 2 cut(s) 438, 558
Hin1II CATG 2 cut(s) 236, 419
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HinfI GANTC 6 cut(s) 46, 186, 281, 291, 470, 575
HpaII CCGG 1 cut(s) 166
HphI GGTGA 3 cut(s) 368, 410, 479
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 5 cut(s) 185, 191, 286, 305, 653
Hpy188III TCNNGA 5 cut(s) 6, 114, 278, 343, 596
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 2 cut(s) 443, 620
HpyAV CCTTC 2 cut(s) 395, 614
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 2 cut(s) 232, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 166, 373
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 2 cut(s) 438, 558
Hsp92II CATG 2 cut(s) 236, 419
HspAI GCGC 1 cut(s) 558
KasI GGCGCC 1 cut(s) 557
Kzo9I GATC 3 cut(s) 153, 271, 589
LmnI GCTCC 2 cut(s) 186, 432
Lsp1109I GCAGC 2 cut(s) 55, 251
LweI GCATC 2 cut(s) 136, 325
MaeII ACGT 1 cut(s) 459
MalI GATC 3 cut(s) 155, 273, 591
MbiI CCGCTC 1 cut(s) 435
MboI GATC 3 cut(s) 153, 271, 589
MboII GAAGA 6 cut(s) 260, 278, 332, 395, 584, 638
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 1 cut(s) 362
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 2 cut(s) 300, 569
MmeI TCCRAC 2 cut(s) 360, 505
MslI CAYNNNNRTG 2 cut(s) 78, 420
MspA1I CMGCKG 2 cut(s) 242, 314
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 65, 166, 373
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 1 cut(s) 166
NdeII GATC 3 cut(s) 153, 271, 589
NlaIII CATG 2 cut(s) 236, 419
NlaIV GGNNCC 4 cut(s) 170, 182, 193, 559
PfeI GAWTC 4 cut(s) 46, 186, 281, 470
PkrI GCNGC 8 cut(s) 70, 99, 210, 241, 410, 437, 610, 613
PleI GAGTC 2 cut(s) 299, 569
PluTI GGCGCC 1 cut(s) 561
PpsI GAGTC 2 cut(s) 299, 569
Psp124BI GAGCTC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 310
PspN4I GGNNCC 4 cut(s) 170, 182, 193, 559
PspPI GGNCC 2 cut(s) 99, 308
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 78, 420
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 8 cut(s) 69, 98, 209, 240, 409, 436, 609, 612
Sau3AI GATC 3 cut(s) 153, 271, 589
Sau96I GGNCC 2 cut(s) 99, 308
SchI GAGTC 2 cut(s) 300, 569
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 54, 65, 147, 303, 394, 424, 453, 462, 650
SfaNI GCATC 2 cut(s) 136, 325
SfoI GGCGCC 1 cut(s) 559
SmiMI CAYNNNNRTG 2 cut(s) 78, 420
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 362
SspDI GGCGCC 1 cut(s) 557
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 462
TaqI TCGA 5 cut(s) 147, 294, 327, 453, 588
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 631
TauI GCSGC 6 cut(s) 100, 211, 411, 438, 611, 614
TfiI GAWTC 4 cut(s) 46, 186, 281, 470
TseI GCWGC 2 cut(s) 68, 239
TspGWI ACGGA 3 cut(s) 82, 250, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.