RLG00000000536

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000182
Physical Location & Seq
Forward (+)
1780233 .. 1780805
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000536

Sequence Viewer

Length: 399 bp
ATGGGGGATTCAACTGAGACTTATAATAGGAAAAGGAAAGCTGTTCAAGTCACTAAACAAGCCCTGGTCAAACCTGGTATATCTTTCAAGGACATGGCTGCTGGTCCGGGAGTTATCATTGGTAACCCTGTTGGTCAAGGTTCAGGACAACCTGCTAAGAGTGCTTCTTCTAATGAGGAGGAAGTGTTTGAAAACTTTAGTGATGCTAAGGCTTTTGATTTTGTCAAAGATGATAGCGAGGATATGAATGAGTTGGTCAAGGTTGTTAATGGAAAAAGGGCTATTATGCTGGCTGATAGATCTAAGAAGCGCACTAAGGACATGACTGAGGACCATAGCATGGCTGATGCTATTGCTGAGGAGGAAAGTGCCTCTTCTCCTAAGGCCCCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.22

Weight (kDa)

5.5

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 4 cut(s) 12, 47, 88, 191
AjnI CCWGG 2 cut(s) 63, 73
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 104, 331, 385
AsuC2I CCSGG 1 cut(s) 108
AvaII GGWCC 2 cut(s) 104, 331
AxyI CCTNAGG 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 65, 75
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 160
BglII AGATCT 1 cut(s) 299
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 65, 75, 108
Bme18I GGWCC 2 cut(s) 104, 331
BmgT120I GGNCC 3 cut(s) 104, 331, 385
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 3 cut(s) 65, 75, 108
BmsI GCATC 2 cut(s) 193, 337
Bpu10I CCTNAGC 2 cut(s) 207, 357
BpuMI CCSGG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 381
BseBI CCWGG 2 cut(s) 65, 75
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 6, 318, 348
BseRI GAGGAG 2 cut(s) 191, 374
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 299
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 3 cut(s) 7, 319, 349
BspLI GGNNCC 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 65, 75
Bst6I CTCTTC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 8 cut(s) 15, 156, 207, 303, 315, 327, 357, 381
BstEII GGTNACC 1 cut(s) 122
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 65, 75
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 63, 73, 106
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 1 cut(s) 386
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 3 cut(s) 104, 331, 385
CsiI ACCWGGT 1 cut(s) 73
CviAII CATG 4 cut(s) 94, 322, 340, 396
CviJI RGCY 8 cut(s) 41, 62, 98, 212, 281, 293, 344, 386
CviKI_1 RGCY 8 cut(s) 41, 62, 98, 212, 281, 293, 344, 386
DdeI CTNAG 8 cut(s) 15, 156, 207, 303, 315, 327, 357, 381
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 104, 331
Eco81I CCTNAGG 1 cut(s) 381
Eco91I GGTNACC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 385
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 63, 73
FaeI CATG 4 cut(s) 97, 325, 343, 399
FaiI YATR 9 cut(s) 24, 80, 95, 245, 287, 323, 336, 341, 397
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FatI CATG 4 cut(s) 93, 321, 339, 395
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GlaI GCGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 312
Hin1II CATG 4 cut(s) 97, 325, 343, 399
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 8 cut(s) 15, 156, 207, 303, 315, 327, 357, 381
Hsp92II CATG 4 cut(s) 97, 325, 343, 399
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 299
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 193, 337
MabI ACCWGGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 49, 122
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 2 cut(s) 159, 366
MflI RGATCY 1 cut(s) 299
MnlI CCTC 7 cut(s) 169, 172, 232, 322, 352, 355, 382
MseI TTAA 1 cut(s) 267
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 3 cut(s) 65, 75, 108
MvaI CCWGG 2 cut(s) 65, 75
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 108
NdeII GATC 1 cut(s) 299
NlaIII CATG 4 cut(s) 97, 325, 343, 399
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 1 cut(s) 100
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 63, 73
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 63, 73
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 3 cut(s) 104, 331, 385
PsuI RGATCY 1 cut(s) 299
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 3 cut(s) 104, 331, 385
ScrFI CCNGG 3 cut(s) 65, 75, 108
SetI ASST 5 cut(s) 43, 76, 142, 154, 264
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 2 cut(s) 193, 337
SinI GGWCC 2 cut(s) 104, 331
StyD4I CCNGG 3 cut(s) 63, 73, 106
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 104, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.