FvH4_4g30262

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000182
Physical Location & Seq
Reverse (-)
29983396 .. 29985648
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30262.t1

Sequence Viewer

Length: 2049 bp
ATGGACTTTTCTAAGACACGCGCGACACGCACTCTCCCTTCTCCCCAATTCGCTCTGCTAGGGTCCCTTGGCCTGAATCTCAAAGCCGCCGGGGAAAGCAAACGTTGGCCACCTTGGCCAGGCTGGCTTCCTTTTGCTCACAGACCCCCCAAACCCCATCATGATTCCCCAGTCCAAGAAATCTTTGAGATCAGATTCCTACATGAAACCTTTCTTCATACCTACAAAATTAGGATAGGTGGTTATGAGTCCCTCTCTCATCCAGAAATCACCCCGAACCAGATCGTTTGGTTTATCCACGATCTCGTGATTCTCTCGGTCGATCACGCAATAGCAAAAGGTGGTGGCTATGACAAGTTTCGAGACCATCGGGTACTGGGTAAAGCCTCCTTTTCCCTTTATCAATATGTCCGAATAATCCAGGCTTCTAGGGTTCTACTGATTCAATCCCCTAGTCTGCATTCAATCTTTGGCGTAGATTTAATGTATTTGGGTTTTTACATGCATGCGCATGGGATTAATAATGATCCCTACACGTTTTTTAGATCGGAACGATCTCTTGATCCCTGTAGTATTTATAGATCCACCTGGTTCATGATTCCTTTCATTGTACCTGATTCCCCTCTCTGTGATTTACTTCTTGCCTACTTCCTCACAATGGCCTTCAGTCCAAATGCCAGAGCTCAAGCCAGTTCCTCCAAACCCAGGAAACCTATCATCTTCAACCCCTATCCTCGCCCCCAACAAAATGAACCCCCTTTTGTTACATCAGTTGGTGGTGTGAGAGTGGTTGTTGAGAGAGACCAAACCCATATCTTTACTCCAAGAAAAACCATGTCCCTGAAACAACACCTGTTGAAATATTGTTTGGTGGCCAAAATCTTTGGCAAAAGAGTATCCCCTAAGCGCATCGTTCGTAGGTGTAACCATCTATGGGCTGCTCTCCAAGGCACTGTCAAGATGGTGCAAATGGCAAATGGGTGGTTTGCTCTAGAGTTTGTGCACACCCAAGATGCTGATTATGTGCTGGAGAACAAACCTTGGTTTGTCCGAGGTAGAATCTTCCATATTCGGCGATGGGCCCCATCTTTTGATCCCAAGGAGGCCAAGATTGAAACCCTCACACTCTGGCTGGATGAAAAGACCAAAAACACTGAGAACTACATGTTTGCCAGAGCATGCATGGAGATAGATCTTCGTACTCCACTCAAGCGTGTTCTTGTAGTGCATGAAGAAGACGAAGGGGATCTGGAATTTAACATGGTAAGCAAGCCTGTCAAGCTTTATGTTTCATATGAAGGTATTTTTGAGGTCTGTTTCGAGTGTGGCAGTCATAAGCATAAGTTCTGGGAATGCCCCAACAAGAAGAAAGATGATCACTTTGTTTTGGTGGATCGTGCTGAGAGTGACAATGATGTGGAGCCTGAGGAACTAGAGGTTGACCCGGAAATCAAAAGCCTTGCCAACAAAGAAATTATGCTCTATTTTCCGTTACCTATCAAAACTGACAACCACATGCCTGAGGAAGCAGCTAAGGAGGACCTAAACCCGCCCTCTCCAGCTTGGACCACAGTGCAAAGGAAGAACAAAACTACGTCCAAAGCCCAGGCTTCTAGTGGAATCCAAGGAGGAAACGTCTCCAATGGAGATGTCAAGGCTCCTAAAAAGAAGAAAGCAAATATGGTGCAACCGGGTATCTCTTTTAAGGATGTGGCTGCAAGCACAGGTGCTTTTGCGGTATCTGATGAGGATGTCAGGAAGGCCCTGCACTTGATCAACTCTAGAAGTCCCTCAAGTAATCAAGAGGAGGTGTCTGAGAATTTTGTGGCTGCAAAGTCTCATGGTAATGAGGGGAAGGATATGGTAATGACTAATGCTGGCATCCAAAGCAGCAAAGGTAATAACCTTGCTATGAGTGGGAGTTCTGAGATGAGCACAGGCACCGAATCAAAGAAGAGAGCTAGGGTTCTGGAGGATGACAACATGCTGTATGAATCTGCTGAGGAGGAAGGCAGTATCTCGTCTGCTGCAAAATTAGCCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

683

Amino Acids

77.32

Weight (kDa)

8.78

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 285 - 368 2.6e-14 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 1940
AccII CGCG 2 cut(s) 21, 23
AciI CCGC 3 cut(s) 87, 1550, 1736
AclI AACGTT 1 cut(s) 103
AclWI GGATC 6 cut(s) 521, 557, 576, 1088, 1254, 1401
AcoI YGGCCR 3 cut(s) 107, 116, 873
AcsI RAATTY 2 cut(s) 1253, 1819
AcuI CTGAAG 1 cut(s) 649
AfaI GTAC 3 cut(s) 375, 612, 1201
AfiI CCNNNNNNNGG 4 cut(s) 119, 658, 705, 934
AflIII ACRYGT 2 cut(s) 534, 1164
AgsI TTSAA 5 cut(s) 446, 465, 724, 859, 1115
AjnI CCWGG 5 cut(s) 118, 420, 587, 704, 1605
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AluBI AGCT 5 cut(s) 683, 1282, 1532, 1562, 1961
AluI AGCT 5 cut(s) 683, 1282, 1532, 1562, 1961
Alw21I GWGCWC 3 cut(s) 685, 1005, 1937
Alw26I GTCTC 4 cut(s) 357, 795, 1642, 1842
Alw44I GTGCAC 1 cut(s) 1001
AlwI GGATC 6 cut(s) 521, 557, 576, 1088, 1254, 1401
AoxI GGCC 8 cut(s) 70, 107, 116, 660, 873, 1080, 1104, 1761
ApaI GGGCCC 1 cut(s) 1084
ApaLI GTGCAC 1 cut(s) 1001
ApeKI GCWGC 6 cut(s) 938, 1529, 1715, 1829, 1890, 2027
ApoI RAATTY 2 cut(s) 1253, 1819
AseI ATTAAT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 3 cut(s) 23, 511, 909
AspS9I GGNCC 6 cut(s) 63, 1080, 1081, 1540, 1566, 1762
AsuC2I CCSGG 3 cut(s) 91, 1445, 1692
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 3 cut(s) 63, 1540, 1566
AxyI CCTNAGG 2 cut(s) 1425, 1521
BaeGI GKGCMC 2 cut(s) 1005, 1084
BalI TGGCCA 3 cut(s) 109, 118, 875
BanI GGYRCC 1 cut(s) 1940
BanII GRGCYC 2 cut(s) 685, 1084
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 3 cut(s) 685, 1005, 1937
BbvCI CCTCAGC 1 cut(s) 2001
BbvI GCAGC 6 cut(s) 925, 1541, 1702, 1816, 1902, 2014
BccI CCATC 6 cut(s) 165, 375, 936, 955, 1071, 1093
BciT130I CCWGG 5 cut(s) 120, 422, 589, 706, 1607
BciVI GTATCC 1 cut(s) 907
BclI TGATCA 2 cut(s) 1375, 1773
BcnI CCSGG 3 cut(s) 91, 1445, 1692
BcoDI GTCTC 4 cut(s) 357, 795, 1642, 1842
BfaI CTAG 8 cut(s) 59, 429, 453, 992, 1433, 1614, 1782, 1962
BfmI CTRYAG 1 cut(s) 568
BfuI GTATCC 1 cut(s) 907
BglI GCCNNNNNGGC 2 cut(s) 115, 124
BglII AGATCT 1 cut(s) 1192
BisI GCNGC 7 cut(s) 87, 939, 1530, 1716, 1830, 1891, 2028
BlsI GCNGC 7 cut(s) 88, 940, 1531, 1717, 1831, 1892, 2029
Bme1390I CCNGG 8 cut(s) 91, 120, 422, 589, 706, 1445, 1607, 1692
Bme18I GGWCC 3 cut(s) 63, 1540, 1566
BmgT120I GGNCC 6 cut(s) 63, 1080, 1081, 1540, 1566, 1762
BmiI GGNNCC 7 cut(s) 64, 65, 1082, 1083, 1422, 1659, 1942
BmrFI CCNGG 8 cut(s) 91, 120, 422, 589, 706, 1445, 1607, 1692
BmrI ACTGGG 2 cut(s) 164, 386
BmsI GCATC 3 cut(s) 918, 1003, 1890
BmuI ACTGGG 2 cut(s) 164, 386
BpiI GAAGAC 1 cut(s) 1242
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 3 cut(s) 1049, 1542, 1991
Bpu10I CCTNAGC 3 cut(s) 903, 1533, 2001
BpuEI CTTGAG 3 cut(s) 669, 1193, 1777
BpuMI CCSGG 3 cut(s) 91, 1445, 1692
BsaI GGTCTC 2 cut(s) 357, 795
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 1620, 1650
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 658, 705, 934
Bse1I ACTGG 3 cut(s) 170, 381, 690
Bse21I CCTNAGG 2 cut(s) 1425, 1521
BseBI CCWGG 5 cut(s) 120, 422, 589, 706, 1607
BseGI GGATG 6 cut(s) 259, 1141, 1714, 1756, 1881, 1981
BseLI CCNNNNNNNGG 4 cut(s) 119, 658, 705, 934
BseMII CTCAG 7 cut(s) 1146, 1392, 1416, 1512, 1806, 1917, 1992
BseNI ACTGG 3 cut(s) 170, 381, 690
BseRI GAGGAG 2 cut(s) 1820, 2018
BseSI GKGCMC 2 cut(s) 1005, 1084
BseXI GCAGC 6 cut(s) 925, 1541, 1702, 1816, 1902, 2014
BsgI GTGCAG 1 cut(s) 1751
Bsh1236I CGCG 2 cut(s) 21, 23
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 8 cut(s) 72, 109, 118, 662, 875, 1082, 1106, 1763
BshNI GGYRCC 1 cut(s) 1940
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 3 cut(s) 685, 1005, 1937
BsiSI CCGG 3 cut(s) 90, 1445, 1691
BslFI GGGAC 4 cut(s) 49, 235, 823, 1773
BslI CCNNNNNNNGG 4 cut(s) 119, 658, 705, 934
BsmAI GTCTC 4 cut(s) 357, 795, 1642, 1842
BsmBI CGTCTC 1 cut(s) 1642
BsmFI GGGAC 4 cut(s) 49, 235, 823, 1773
BsmI GAATGC 2 cut(s) 460, 1358
BsnI GGCC 8 cut(s) 72, 109, 118, 662, 875, 1082, 1106, 1763
Bso31I GGTCTC 2 cut(s) 357, 795
Bsp120I GGGCCC 1 cut(s) 1080
Bsp1286I GDGCHC 4 cut(s) 685, 1005, 1084, 1937
BspACI CCGC 3 cut(s) 87, 1550, 1736
BspANI GGCC 8 cut(s) 72, 109, 118, 662, 875, 1082, 1106, 1763
BspCNI CTCAG 7 cut(s) 1147, 1393, 1417, 1513, 1807, 1918, 1993
BspFNI CGCG 2 cut(s) 21, 23
BspHI TCATGA 2 cut(s) 160, 594
BspLI GGNNCC 7 cut(s) 64, 65, 1082, 1083, 1422, 1659, 1942
BspPI GGATC 6 cut(s) 521, 557, 576, 1088, 1254, 1401
BspT107I GGYRCC 1 cut(s) 1940
BspTNI GGTCTC 2 cut(s) 357, 795
BsrI ACTGG 3 cut(s) 170, 381, 690
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 6 cut(s) 67, 113, 946, 1040, 1098, 1624
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 5 cut(s) 120, 422, 589, 706, 1607
Bst4CI ACNGT 2 cut(s) 955, 1573
Bst6I CTCTTC 1 cut(s) 1949
BstC8I GCNNGC 6 cut(s) 125, 507, 1180, 1271, 1720, 1879
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 6 cut(s) 259, 1141, 1714, 1756, 1881, 1981
BstFNI CGCG 2 cut(s) 21, 23
BstHHI GCGC 3 cut(s) 23, 511, 909
BstMAI GTCTC 4 cut(s) 357, 795, 1642, 1842
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 6 cut(s) 27, 115, 124, 1279, 1887, 2036
BstNI CCWGG 5 cut(s) 120, 422, 589, 706, 1607
BstNSI RCATGY 6 cut(s) 505, 509, 1168, 1182, 1519, 1987
BstSCI CCNGG 8 cut(s) 89, 118, 420, 587, 704, 1443, 1605, 1690
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 2 cut(s) 1005, 1084
BstUI CGCG 2 cut(s) 21, 23
BstV1I GCAGC 6 cut(s) 925, 1541, 1702, 1816, 1902, 2014
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 3 cut(s) 581, 1192, 1246
BstYI RGATCY 3 cut(s) 581, 1192, 1246
Bsu36I CCTNAGG 2 cut(s) 1425, 1521
BsuI GTATCC 1 cut(s) 907
BsuRI GGCC 8 cut(s) 72, 109, 118, 662, 875, 1082, 1106, 1763
BtgZI GCGATG 1 cut(s) 1090
BtsCI GGATG 6 cut(s) 259, 1141, 1714, 1756, 1881, 1981
BtsIMutI CAGTG 3 cut(s) 951, 1152, 1578
Cac8I GCNNGC 6 cut(s) 125, 507, 1180, 1271, 1720, 1879
CciI TCATGA 2 cut(s) 160, 594
CfoI GCGC 3 cut(s) 23, 511, 909
Cfr13I GGNCC 6 cut(s) 63, 1080, 1081, 1540, 1566, 1762
CsiI ACCWGGT 1 cut(s) 587
Csp6I GTAC 3 cut(s) 374, 611, 1200
CviQI GTAC 3 cut(s) 374, 611, 1200
EaeI YGGCCR 3 cut(s) 107, 116, 873
Eam1104I CTCTTC 1 cut(s) 1949
EarI CTCTTC 1 cut(s) 1949
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 6 cut(s) 67, 113, 946, 1040, 1098, 1624
Eco24I GRGCYC 2 cut(s) 685, 1084
Eco31I GGTCTC 2 cut(s) 357, 795
Eco47I GGWCC 3 cut(s) 63, 1540, 1566
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 649
Eco81I CCTNAGG 2 cut(s) 1425, 1521
EcoICRI GAGCTC 1 cut(s) 683
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 4 cut(s) 63, 1081, 1540, 1762
EcoRII CCWGG 5 cut(s) 118, 420, 587, 704, 1605
EcoT14I CCWWGG 6 cut(s) 67, 113, 946, 1040, 1098, 1624
EcoT22I ATGCAT 2 cut(s) 507, 1184
EcoT38I GRGCYC 2 cut(s) 685, 1084
ErhI CCWWGG 6 cut(s) 67, 113, 946, 1040, 1098, 1624
Esp3I CGTCTC 1 cut(s) 1642
FaqI GGGAC 4 cut(s) 49, 235, 823, 1773
FauI CCCGC 1 cut(s) 1557
FauNDI CATATG 1 cut(s) 1294
FbaI TGATCA 2 cut(s) 1375, 1773
Fnu4HI GCNGC 7 cut(s) 87, 939, 1530, 1716, 1830, 1891, 2028
FokI GGATG 6 cut(s) 246, 1148, 1721, 1763, 1868, 1988
FriOI GRGCYC 2 cut(s) 685, 1084
Fsp4HI GCNGC 7 cut(s) 87, 939, 1530, 1716, 1830, 1891, 2028
FspAI RTGCGCAY 1 cut(s) 510
FspBI CTAG 8 cut(s) 59, 429, 453, 992, 1433, 1614, 1782, 1962
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 3 cut(s) 22, 510, 908
GluI GCNGC 7 cut(s) 87, 939, 1530, 1716, 1830, 1891, 2028
GsuI CTGGAG 3 cut(s) 1049, 1542, 1991
HaeIII GGCC 8 cut(s) 72, 109, 118, 662, 875, 1082, 1106, 1763
HapII CCGG 3 cut(s) 90, 1445, 1691
HhaI GCGC 3 cut(s) 23, 511, 909
Hin6I GCGC 3 cut(s) 21, 509, 907
HinP1I GCGC 3 cut(s) 21, 509, 907
HincII GTYRAC 1 cut(s) 1441
HindII GTYRAC 1 cut(s) 1441
HindIII AAGCTT 1 cut(s) 1280
HpaII CCGG 3 cut(s) 90, 1445, 1691
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 1003, 1441
Hpy188I TCNGA 7 cut(s) 194, 413, 550, 1052, 1744, 1816, 1927
Hpy8I GTNNAC 2 cut(s) 1003, 1441
HpyAV CCTTC 7 cut(s) 48, 673, 1235, 1292, 1753, 1849, 2003
HpyCH4III ACNGT 2 cut(s) 955, 1573
HpyCH4IV ACGT 4 cut(s) 103, 536, 1595, 1635
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 115, 124, 1279, 1887, 2036
HpySE526I ACGT 4 cut(s) 103, 536, 1595, 1635
HspAI GCGC 3 cut(s) 21, 509, 907
KflI GGGWCCC 1 cut(s) 63
Ksp22I TGATCA 2 cut(s) 1375, 1773
LmnI GCTCC 2 cut(s) 1420, 1663
Lsp1109I GCAGC 6 cut(s) 925, 1541, 1702, 1816, 1902, 2014
LweI GCATC 3 cut(s) 918, 1003, 1890
MabI ACCWGGT 1 cut(s) 587
MaeI CTAG 8 cut(s) 59, 429, 453, 992, 1433, 1614, 1782, 1962
MaeII ACGT 4 cut(s) 103, 536, 1595, 1635
MaeIII GTNAC 4 cut(s) 763, 923, 1406, 1491
MflI RGATCY 3 cut(s) 581, 1192, 1246
MhlI GDGCHC 4 cut(s) 685, 1005, 1084, 1937
MlsI TGGCCA 3 cut(s) 109, 118, 875
MluCI AATT 6 cut(s) 47, 228, 1253, 1473, 1819, 2033
MluNI TGGCCA 3 cut(s) 109, 118, 875
MlyI GAGTC 1 cut(s) 257
Mox20I TGGCCA 3 cut(s) 109, 118, 875
Mph1103I ATGCAT 2 cut(s) 507, 1184
MroXI GAANNNNTTC 1 cut(s) 210
MscI TGGCCA 3 cut(s) 109, 118, 875
MseI TTAA 4 cut(s) 482, 519, 1257, 1704
MslI CAYNNNNRTG 2 cut(s) 510, 1845
Msp20I TGGCCA 3 cut(s) 109, 118, 875
MspI CCGG 3 cut(s) 90, 1445, 1691
MspR9I CCNGG 8 cut(s) 91, 120, 422, 589, 706, 1445, 1607, 1692
Mva1269I GAATGC 2 cut(s) 460, 1358
MvaI CCWGG 5 cut(s) 120, 422, 589, 706, 1607
MvnI CGCG 2 cut(s) 21, 23
MwoI GCNNNNNNNGC 6 cut(s) 27, 115, 124, 1279, 1887, 2036
NciI CCSGG 3 cut(s) 91, 1445, 1692
NdeI CATATG 1 cut(s) 1294
NlaIV GGNNCC 7 cut(s) 64, 65, 1082, 1083, 1422, 1659, 1942
NmuCI GTSAC 1 cut(s) 1406
NsbI TGCGCA 1 cut(s) 510
NsiI ATGCAT 2 cut(s) 507, 1184
NspI RCATGY 6 cut(s) 505, 509, 1168, 1182, 1519, 1987
PaeI GCATGC 2 cut(s) 509, 1182
PagI TCATGA 2 cut(s) 160, 594
PciI ACATGT 1 cut(s) 1164
PctI GAATGC 2 cut(s) 460, 1358
PdmI GAANNNNTTC 1 cut(s) 210
PkrI GCNGC 7 cut(s) 88, 940, 1531, 1717, 1831, 1892, 2029
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PpuMI RGGWCCY 2 cut(s) 63, 1540
PscI ACATGT 1 cut(s) 1164
PshBI ATTAAT 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 685
Psp1406I AACGTT 1 cut(s) 103
Psp5II RGGWCCY 2 cut(s) 63, 1540
Psp6I CCWGG 5 cut(s) 118, 420, 587, 704, 1605
PspGI CCWGG 5 cut(s) 118, 420, 587, 704, 1605
PspN4I GGNNCC 7 cut(s) 64, 65, 1082, 1083, 1422, 1659, 1942
PspOMI GGGCCC 1 cut(s) 1080
PspPI GGNCC 6 cut(s) 63, 1080, 1081, 1540, 1566, 1762
PspPPI RGGWCCY 2 cut(s) 63, 1540
PsuI RGATCY 3 cut(s) 581, 1192, 1246
RsaI GTAC 3 cut(s) 375, 612, 1201
RsaNI GTAC 3 cut(s) 374, 611, 1200
RseI CAYNNNNRTG 2 cut(s) 510, 1845
SacI GAGCTC 1 cut(s) 685
SaqAI TTAA 4 cut(s) 482, 519, 1257, 1704
SatI GCNGC 7 cut(s) 87, 939, 1530, 1716, 1830, 1891, 2028
Sau96I GGNCC 6 cut(s) 63, 1080, 1081, 1540, 1566, 1762
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 8 cut(s) 91, 120, 422, 589, 706, 1445, 1607, 1692
SduI GDGCHC 4 cut(s) 685, 1005, 1084, 1937
SexAI ACCWGGT 1 cut(s) 587
SfaNI GCATC 3 cut(s) 918, 1003, 1890
SfcI CTRYAG 1 cut(s) 568
SfiI GGCCNNNNNGGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 63, 1540, 1566
SmiMI CAYNNNNRTG 2 cut(s) 510, 1845
SmlI CTYRAG 3 cut(s) 684, 1208, 1792
SmoI CTYRAG 3 cut(s) 684, 1208, 1792
SphI GCATGC 2 cut(s) 509, 1182
Sse9I AATT 6 cut(s) 47, 228, 1253, 1473, 1819, 2033
SsiI CCGC 3 cut(s) 87, 1550, 1736
SspI AATATT 1 cut(s) 863
SspMI CTAG 8 cut(s) 59, 429, 453, 992, 1433, 1614, 1782, 1962
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 8 cut(s) 89, 118, 420, 587, 704, 1443, 1605, 1690
StyI CCWWGG 6 cut(s) 67, 113, 946, 1040, 1098, 1624
TaaI ACNGT 2 cut(s) 955, 1573
TaiI ACGT 4 cut(s) 106, 539, 1598, 1638
TaqI TCGA 3 cut(s) 321, 361, 1320
TaqII GACCGA 1 cut(s) 307
TasI AATT 6 cut(s) 47, 228, 1253, 1473, 1819, 2033
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 4 cut(s) 482, 519, 1257, 1704
Tru9I TTAA 4 cut(s) 482, 519, 1257, 1704
TscAI CASTG 3 cut(s) 958, 1159, 1578
TseFI GTSAC 1 cut(s) 1406
TseI GCWGC 6 cut(s) 938, 1529, 1715, 1829, 1890, 2027
Tsp45I GTSAC 1 cut(s) 1406
TspGWI ACGGA 1 cut(s) 1479
TspRI CASTG 3 cut(s) 958, 1159, 1578
VneI GTGCAC 1 cut(s) 1001
VpaK11BI GGWCC 3 cut(s) 63, 1540, 1566
VspI ATTAAT 1 cut(s) 519
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 2 cut(s) 1253, 1819
XbaI TCTAGA 2 cut(s) 991, 1781
XceI RCATGY 6 cut(s) 505, 509, 1168, 1182, 1519, 1987
XcmI CCANNNNNNNNNTGG 2 cut(s) 1180, 1613
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 8 cut(s) 59, 429, 453, 992, 1433, 1614, 1782, 1962
Zsp2I ATGCAT 2 cut(s) 507, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.