Rh1AG048100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Forward (+)
8257132 .. 8261996
4865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG048100.1

Sequence Viewer

Length: 489 bp
ATGTTTAATTATCATGACCAAGGCAATGTGAATTTTGCCAACCGTGCTGCCACCCGTTCTGGTGAGGAGGCTTCTGATAACTCTTGGAAGATTGTGGCTAGAAAAGGCAAAGGGAAGGGTAACTTCTATCAAAAGCAAGGCTCTGGTAATCTGAGGTTTCTGCCTAAGTCCAGCAGTGTTGTTCCTGGTGTTAGCTTTAGGGATGCTGCTGCTGGTATTGGTGTGATTGGTGATAAGGTAGGATTGGAGAAGAAAAATGAGGTTGTTGTCCTTTCTGATGGTTCCTCCCAGGAGGTCGATCAGTTTATAGATGCTTTTGAACCTCCAAAGTTGGGGGATATTGAGGAGTTGCTGCGAAGTGATCCTGCAAATAACTTGAATGGTGCACTGGTTGGGACTAGTGGAACCAAGGCTGTGGTTCCAGCTCCTATAGCCTTGGTTCCAGCTCCTAAAAAAAGATCTCGCCAGATGTTATACATTTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.29

Weight (kDa)

9.36

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 320, 379
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 184, 288
AluBI AGCT 3 cut(s) 195, 425, 446
AluI AGCT 3 cut(s) 195, 425, 446
Alw21I GWGCWC 1 cut(s) 388
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 1 cut(s) 356
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 4 cut(s) 47, 206, 209, 352
ApoI RAATTY 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 74, 242
BaeGI GKGCMC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 4 cut(s) 34, 193, 196, 339
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 186, 290
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 2 cut(s) 99, 399
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 458
BisI GCNGC 4 cut(s) 48, 207, 210, 353
BlsI GCNGC 4 cut(s) 49, 208, 211, 354
Bme1390I CCNGG 2 cut(s) 186, 290
BmiI GGNNCC 4 cut(s) 283, 406, 420, 441
BmrFI CCNGG 2 cut(s) 186, 290
BmsI GCATC 2 cut(s) 193, 301
BsaJI CCNNGG 4 cut(s) 19, 288, 408, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 186, 290
BseDI CCNNGG 4 cut(s) 19, 288, 408, 435
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 80, 359
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 4 cut(s) 34, 193, 196, 339
BsiHKAI GWGCWC 1 cut(s) 388
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 3 cut(s) 298, 361, 458
BspCNI CTCAG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 4 cut(s) 283, 406, 420, 441
BspPI GGATC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 4 cut(s) 19, 288, 408, 435
BssMI GATC 3 cut(s) 298, 361, 458
BssT1I CCWWGG 3 cut(s) 19, 408, 435
Bst2UI CCWGG 2 cut(s) 186, 290
Bst4CI ACNGT 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 152, 165
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 3 cut(s) 301, 364, 461
BstMBI GATC 3 cut(s) 298, 361, 458
BstMWI GCNNNNNNNGC 2 cut(s) 44, 431
BstNI CCWGG 2 cut(s) 186, 290
BstSCI CCNGG 2 cut(s) 184, 288
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 34, 193, 196, 339
BstX2I RGATCY 1 cut(s) 458
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 458
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 181, 386
CciI TCATGA 1 cut(s) 13
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 71, 98, 141, 195, 413, 425, 434, 446
CviKI_1 RGCY 8 cut(s) 71, 98, 141, 195, 413, 425, 434, 446
DdeI CTNAG 2 cut(s) 152, 165
DpnI GATC 3 cut(s) 300, 363, 460
DpnII GATC 3 cut(s) 298, 361, 458
Eco130I CCWWGG 3 cut(s) 19, 408, 435
EcoRII CCWGG 2 cut(s) 184, 288
EcoT14I CCWWGG 3 cut(s) 19, 408, 435
ErhI CCWWGG 3 cut(s) 19, 408, 435
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 308, 431, 475
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 48, 207, 210, 353
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 4 cut(s) 48, 207, 210, 353
FspBI CTAG 2 cut(s) 99, 399
GluI GCNGC 4 cut(s) 48, 207, 210, 353
Hin1II CATG 1 cut(s) 17
HphI GGTGA 2 cut(s) 74, 242
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 76, 153, 277
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 368, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 431
HpyF3I CTNAG 2 cut(s) 152, 165
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 3 cut(s) 298, 361, 458
LmnI GCTCC 2 cut(s) 430, 451
Lsp1109I GCAGC 4 cut(s) 34, 193, 196, 339
LweI GCATC 2 cut(s) 193, 301
MaeI CTAG 2 cut(s) 99, 399
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 300, 363, 460
MboI GATC 3 cut(s) 298, 361, 458
MboII GAAGA 2 cut(s) 100, 262
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 2 cut(s) 7, 31
MnlI CCTC 8 cut(s) 58, 61, 147, 253, 286, 295, 333, 337
MseI TTAA 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 186, 290
MvaI CCWGG 2 cut(s) 186, 290
MwoI GCNNNNNNNGC 2 cut(s) 44, 431
NdeII GATC 3 cut(s) 298, 361, 458
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 4 cut(s) 283, 406, 420, 441
PagI TCATGA 1 cut(s) 13
PkrI GCNGC 4 cut(s) 49, 208, 211, 354
Psp6I CCWGG 2 cut(s) 184, 288
PspGI CCWGG 2 cut(s) 184, 288
PspN4I GGNNCC 4 cut(s) 283, 406, 420, 441
PsuI RGATCY 1 cut(s) 458
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 48, 207, 210, 353
Sau3AI GATC 3 cut(s) 298, 361, 458
ScrFI CCNGG 2 cut(s) 186, 290
SduI GDGCHC 1 cut(s) 388
SetI ASST 8 cut(s) 158, 197, 240, 264, 297, 325, 427, 448
SfaNI GCATC 2 cut(s) 193, 301
SfcI CTRYAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 2 cut(s) 7, 31
SspMI CTAG 2 cut(s) 99, 399
StyD4I CCNGG 2 cut(s) 184, 288
StyI CCWWGG 3 cut(s) 19, 408, 435
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 7, 31
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 2 cut(s) 181, 393
TseI GCWGC 4 cut(s) 47, 206, 209, 352
TspRI CASTG 2 cut(s) 181, 393
VneI GTGCAC 1 cut(s) 384
XapI RAATTY 1 cut(s) 31
XspI CTAG 2 cut(s) 99, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.