Rh1AG168600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Reverse (-)
32133151 .. 32137061
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG168600.1

Sequence Viewer

Length: 411 bp
ATGGAAGAGTCCAATGAAACTCCATTGGAGAGGGAGGTGGTGGAGACAGATGAGGATGTGGAGTTTGCCCTGGAGAACCGCCCTTGGTTTGTGAAAGGAAGAATCTTCCACATCCGTGGATGGTTCCCTGGCTTCAACACCCTCACCACTGCCATTGAATCCCTAATTCTCTGGTTTGAAAGCTTTAGTGATGCTAAGTCTTTTGACTTTGTGAAAGAGGATAGTGAGAACTTGAATGAGTATGAGGTCAAGATAGTTCATGGAAAAAGGGTTCTAATATTAGCTGATAGTGATTCTGCAATGAGTTCGGGTTCTAAGAAGAGAACTAGGGAAATCGCTGAGGATCACAGCATGGTAGAGGTTGATGCAGAGGAGGACAGCGCCCCTTCTCCTAAGGCCCCCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

136

Amino Acids

15.56

Weight (kDa)

4.56

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 351
AgsI TTSAA 4 cut(s) 136, 158, 179, 235
AjnI CCWGG 2 cut(s) 69, 127
AleI CACNNNNGTG 1 cut(s) 114
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 2 cut(s) 183, 284
AluI AGCT 2 cut(s) 183, 284
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 351
AoxI GGCC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 2 cut(s) 71, 129
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 384
Bme1390I CCNGG 2 cut(s) 71, 129
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 2 cut(s) 125, 399
BmrFI CCNGG 2 cut(s) 71, 129
BmsI GCATC 2 cut(s) 181, 355
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 69, 83, 115, 127
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 71, 129
BseDI CCNNGG 4 cut(s) 69, 83, 115, 127
BseGI GGATG 3 cut(s) 61, 111, 125
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 386
BshFI GGCC 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 398
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 125, 399
BspPI GGATC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 4 cut(s) 69, 83, 115, 127
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 71, 129
Bst6I CTCTTC 1 cut(s) 314
BstDEI CTNAG 4 cut(s) 195, 315, 339, 393
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 61, 111, 125
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 343
BstNI CCWGG 2 cut(s) 71, 129
BstSCI CCNGG 2 cut(s) 69, 127
BstXI CCANNNNNNTGG 1 cut(s) 116
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 61, 111, 125
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 397
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 2 cut(s) 260, 352
CviJI RGCY 4 cut(s) 132, 183, 284, 398
CviKI_1 RGCY 4 cut(s) 132, 183, 284, 398
DdeI CTNAG 4 cut(s) 195, 315, 339, 393
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 69, 127
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 2 cut(s) 263, 355
FaiI YATR 4 cut(s) 243, 261, 353, 409
FatI CATG 2 cut(s) 259, 351
FokI GGATG 3 cut(s) 68, 98, 132
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 1 cut(s) 398
HhaI GCGC 1 cut(s) 383
Hin1II CATG 2 cut(s) 263, 355
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 4 cut(s) 8, 102, 158, 293
HphI GGTGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 396
HpyCH4V TGCA 2 cut(s) 299, 368
HpyF3I CTNAG 4 cut(s) 195, 315, 339, 393
Hsp92II CATG 2 cut(s) 263, 355
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 5 cut(s) 56, 83, 114, 141, 157
LweI GCATC 2 cut(s) 181, 355
MaeI CTAG 1 cut(s) 327
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 4 cut(s) 17, 97, 111, 331
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 71, 129
MvaI CCWGG 2 cut(s) 71, 129
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 263, 355
NlaIV GGNNCC 2 cut(s) 125, 399
OliI CACNNNNGTG 1 cut(s) 114
PfeI GAWTC 3 cut(s) 102, 158, 293
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 69, 127
PspGI CCWGG 2 cut(s) 69, 127
PspN4I GGNNCC 2 cut(s) 125, 399
PspPI GGNCC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 114
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 71, 129
SetI ASST 5 cut(s) 39, 185, 249, 286, 363
SfaNI GCATC 2 cut(s) 181, 355
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 79
SspI AATATT 1 cut(s) 279
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 69, 127
StyI CCWWGG 1 cut(s) 83
TasI AATT 1 cut(s) 165
TfiI GAWTC 3 cut(s) 102, 158, 293
TscAI CASTG 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 30, 248
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 154
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.