FvH4_1g28801

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000182
Physical Location & Seq
Reverse (-)
21159684 .. 21160647
964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28801.t1

Sequence Viewer

Length: 636 bp
ATGGAGTTAGATTTGAGAACTCCATGGAAACGTGTGCTAGCAGTCCATAAGGATGATGAAGGTGATCTTGAATTCAACATGGTAAGCAAGCCTACGAAAATTTATGTTTCTTATGAGGGAATTTTTGAAATCTGCTTTGAGTGTGGTAGCCACAAGCACAAGATTTGGGATTGTCCTAAGAAGAAGAAGGAAAAGCACTTTGTGATGATTGATACAACTAAAAGTGACAATGAGATCGAGCCAGAGGATATGGATGTGGACCCTGAAATCAAAGAGCTTGCGACAAAAGAGATTATGTTGTATATCCCGCTCCTGTTGAAGAATAAAAACCATGCTCAGGAGGAACCAATCAATGAGGATCTCAACACCCCCCCCTCCAGAGACGTGGCTGCTCGAAATGGAGTTGAGGCGATTCCCGATGCAGATGTTAAAAAAGGTTTGAAGCTTGCTGGTTCTAGCAGCCCTTCTAGTGAAAAGGAAGAGGTGTATGGGAATTTTGTTGCTAGGGAAAAAAGTCTTGAGTTTGGGAAAGATGTGAACATGGATGATGTTCTAGCTGGTGGGTCTGAGCTGAACAAAGGGAAGAGTCCACTGATTGCAATAAGTGGTAGCTGGGAAATGAGTACTGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

4.97

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 4 cut(s) 71, 99, 120, 493
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 5 cut(s) 71, 76, 128, 319, 442
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 5 cut(s) 277, 445, 557, 571, 612
AluI AGCT 5 cut(s) 277, 445, 557, 571, 612
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 389, 459
ApoI RAATTY 4 cut(s) 71, 99, 120, 493
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 376, 471
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 5 cut(s) 38, 456, 468, 504, 554
BisI GCNGC 2 cut(s) 390, 460
BlsI GCNGC 2 cut(s) 391, 461
BmcAI AGTACT 1 cut(s) 625
Bme18I GGWCC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 261, 345
BmsI GCATC 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 58, 259, 550
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 350, 558
BseNI ACTGG 1 cut(s) 631
BseXI GCAGC 2 cut(s) 376, 471
BseYI CCCAGC 1 cut(s) 612
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 375
BsmBI CGTCTC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 64, 234, 358
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 349, 559
BspHI TCATGA 1 cut(s) 632
BspLI GGNNCC 2 cut(s) 261, 345
BspOI GCTAGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 64, 234, 358
BssT1I CCWWGG 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 474, 578
BstC8I GCNNGC 4 cut(s) 39, 89, 279, 447
BstDEI CTNAG 3 cut(s) 177, 336, 567
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 3 cut(s) 58, 259, 550
BstKTI GATC 3 cut(s) 67, 237, 361
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 3 cut(s) 64, 234, 358
BstV1I GCAGC 2 cut(s) 376, 471
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 3 cut(s) 58, 259, 550
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 4 cut(s) 39, 89, 279, 447
CciI TCATGA 1 cut(s) 632
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 624
CviAII CATG 5 cut(s) 24, 79, 332, 541, 633
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 3 cut(s) 177, 336, 567
DpnI GATC 3 cut(s) 66, 236, 360
DpnII GATC 3 cut(s) 64, 234, 358
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 474, 578
EarI CTCTTC 2 cut(s) 474, 578
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 5 cut(s) 27, 82, 335, 544, 636
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 5 cut(s) 23, 78, 331, 540, 632
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 390, 460
FokI GGATG 3 cut(s) 65, 266, 557
Fsp4HI GCNGC 2 cut(s) 390, 460
FspBI CTAG 5 cut(s) 38, 456, 468, 504, 554
GluI GCNGC 2 cut(s) 390, 460
GsaI CCCAGC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 361
Hin1II CATG 5 cut(s) 27, 82, 335, 544, 636
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 2 cut(s) 412, 586
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 259, 538, 590
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 6 cut(s) 68, 338, 378, 416, 518, 633
Hpy8I GTNNAC 3 cut(s) 259, 538, 590
HpyAV CCTTC 3 cut(s) 53, 181, 474
HpyCH4IV ACGT 2 cut(s) 31, 384
HpyCH4V TGCA 2 cut(s) 422, 599
HpyF3I CTNAG 3 cut(s) 177, 336, 567
HpySE526I ACGT 2 cut(s) 31, 384
Hsp92II CATG 5 cut(s) 27, 82, 335, 544, 636
Kzo9I GATC 3 cut(s) 64, 234, 358
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 255, 276, 323, 326, 391, 435, 543, 598, 612
Lsp1109I GCAGC 2 cut(s) 376, 471
LweI GCATC 1 cut(s) 409
MaeI CTAG 5 cut(s) 38, 456, 468, 504, 554
MaeII ACGT 2 cut(s) 31, 384
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 66, 236, 360
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 64, 234, 358
MboII GAAGA 5 cut(s) 193, 196, 331, 491, 595
MflI RGATCY 1 cut(s) 358
MluCI AATT 4 cut(s) 71, 99, 120, 493
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 7 cut(s) 109, 238, 334, 349, 385, 400, 475
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 23
NdeII GATC 3 cut(s) 64, 234, 358
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 5 cut(s) 27, 82, 335, 544, 636
NlaIV GGNNCC 2 cut(s) 261, 345
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 632
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 391, 461
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 261, 345
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 390, 460
Sau3AI GATC 3 cut(s) 64, 234, 358
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 595
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 71, 99, 120, 493
SsiI CCGC 1 cut(s) 308
SspMI CTAG 5 cut(s) 38, 456, 468, 504, 554
StyI CCWWGG 1 cut(s) 23
TaiI ACGT 2 cut(s) 34, 387
TaqI TCGA 2 cut(s) 237, 394
TasI AATT 4 cut(s) 71, 99, 120, 493
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 389, 459
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 72, 621
TspRI CASTG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 4 cut(s) 71, 99, 120, 493
XspI CTAG 5 cut(s) 38, 456, 468, 504, 554
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.