Rh5BG412900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000182
Physical Location & Seq
Reverse (-)
66959891 .. 66960923
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG412900.1

Sequence Viewer

Length: 768 bp
ATGGAAATTAAGGACCAAGATAACGAACAGATTCGAGCCACTACTTTATGTTTGCTTTTGAGAAACAATCTTATGGGCTATCATGGTGCTGGAACCCTAGAGTTGGCGGCAATCATATGCTTACCAAAGGTGCTCTTTCAGCTTTCCTGCAAGGTTTCGATGATGGAGTTACGTCATTCTCCTCCCCTATTCGCTCGTCCTCCTCGACATGTGGTTTGGGGGTTTTTATTTTGCCTCGACTATGCAAACGTTCATCTCCGTCTTGAGCAAAGAACAATACTTTCAATTAGGGAAGATTTCTTTCCTTTTCTTCTACTATTTATGTTCTGCACTCATCAACCTTCTTTCATACCTGCTCTTACCTGGTCTCCTTCCAATGGCTTTCAACCTTGCTTCGCAAGCTCATCTGGCCTATACTCCAGACTACCATTCCCACAACGCCAATACTTTCCTTTCCCCAGGAACCAAACTGGAGGAAAATCAATCCCTGTAGTGATTGGGGAGAACATTATAAACATTGACCGCTTTGCGGTTAATGTGGAAGTGCGTCCACCACTTGTTGATTTCGACACCCACTACTCCAAATTTTGCCTTGTTGGCAAGATCTTTAGTCCTACTGTCCCGGCTGATGTGGTGTTCAACAAGTGTGCTGAGCATTGGAATAACCTTAAGGGAGCCATCAACATGAGTCGATTGGCGAACAACTGGTTTTGCTTTGAGTTTGATAATGAGGAAGACATGTACTTTATACTGGACAATAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

255

Amino Acids

29.42

Weight (kDa)

7.02

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
Acc36I ACCTGC 1 cut(s) 361
AciI CCGC 3 cut(s) 107, 523, 530
AclI AACGTT 1 cut(s) 249
AcsI RAATTY 1 cut(s) 584
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 103, 377, 529
AflII CTTAAG 1 cut(s) 668
AflIII ACRYGT 2 cut(s) 208, 738
AgsI TTSAA 3 cut(s) 285, 386, 640
AjnI CCWGG 2 cut(s) 362, 458
AluBI AGCT 2 cut(s) 142, 402
AluI AGCT 2 cut(s) 142, 402
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 372
AoxI GGCC 2 cut(s) 409, 761
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 2 cut(s) 157, 686
BciT130I CCWGG 2 cut(s) 364, 460
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 489
BfrI CTTAAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 597
BglII AGATCT 1 cut(s) 603
BisI GCNGC 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 364, 460, 623
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 94, 464, 676
BmrFI CCNGG 3 cut(s) 364, 460, 623
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 2 cut(s) 403, 492
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 377, 529
Bse1I ACTGG 3 cut(s) 475, 710, 756
BseBI CCWGG 2 cut(s) 364, 460
BseDI CCNNGG 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 103, 377, 529
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 3 cut(s) 475, 710, 756
BseRI GAGGAG 2 cut(s) 171, 192
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 2 cut(s) 411, 763
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 623
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 103, 377, 529
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 411, 763
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 603
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 3 cut(s) 107, 523, 530
BspANI GGCC 2 cut(s) 411, 763
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 3 cut(s) 94, 464, 676
BspMI ACCTGC 1 cut(s) 361
BspTI CTTAAG 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 3 cut(s) 475, 710, 756
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 364, 460
Bst4CI ACNGT 1 cut(s) 619
BstAFI CTTAAG 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 651
BstKTI GATC 1 cut(s) 606
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 1 cut(s) 603
BstMWI GCNNNNNNNGC 4 cut(s) 139, 399, 408, 597
BstNI CCWGG 2 cut(s) 364, 460
BstNSI RCATGY 2 cut(s) 212, 742
BstSCI CCNGG 3 cut(s) 362, 458, 621
BstSFI CTRYAG 1 cut(s) 489
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BsuRI GGCC 2 cut(s) 411, 763
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 536
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 1 cut(s) 742
CviAII CATG 4 cut(s) 83, 209, 685, 739
CviJI RGCY 9 cut(s) 38, 78, 142, 381, 402, 411, 626, 677, 763
CviKI_1 RGCY 9 cut(s) 38, 78, 142, 381, 402, 411, 626, 677, 763
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 1 cut(s) 651
DpnI GATC 1 cut(s) 605
DpnII GATC 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 362, 458
FaeI CATG 4 cut(s) 86, 212, 688, 742
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 82, 208, 684, 738
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 2 cut(s) 403, 492
HaeIII GGCC 2 cut(s) 411, 763
HapII CCGG 1 cut(s) 623
HgaI GACGC 1 cut(s) 536
Hin1II CATG 4 cut(s) 86, 212, 688, 742
HinfI GANTC 2 cut(s) 31, 688
HpaII CCGG 1 cut(s) 623
Hpy166II GTNNAC 1 cut(s) 551
Hpy188III TCNNGA 2 cut(s) 263, 420
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 351, 381
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 2 cut(s) 172, 249
HpyCH4V TGCA 3 cut(s) 150, 245, 330
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 399, 408, 597
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 172, 249
Hsp92II CATG 4 cut(s) 86, 212, 688, 742
Kzo9I GATC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 674
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 1 cut(s) 98
MaeII ACGT 2 cut(s) 172, 249
MaeIII GTNAC 1 cut(s) 168
MalI GATC 1 cut(s) 605
MboI GATC 1 cut(s) 603
MboII GAAGA 3 cut(s) 302, 305, 746
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 6, 285, 584
MlyI GAGTC 1 cut(s) 697
MnlI CCTC 6 cut(s) 192, 210, 213, 245, 467, 724
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 9, 534, 669
MslI CAYNNNNRTG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 3 cut(s) 364, 460, 623
MvaI CCWGG 2 cut(s) 364, 460
MwoI GCNNNNNNNGC 4 cut(s) 139, 399, 408, 597
NciI CCSGG 1 cut(s) 623
NdeI CATATG 1 cut(s) 116
NdeII GATC 1 cut(s) 603
NlaIII CATG 4 cut(s) 86, 212, 688, 742
NlaIV GGNNCC 3 cut(s) 94, 464, 676
NspI RCATGY 2 cut(s) 212, 742
PceI AGGCCT 1 cut(s) 763
PciI ACATGT 2 cut(s) 208, 738
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PscI ACATGT 2 cut(s) 208, 738
PsiI TTATAA 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 362, 458
PspGI CCWGG 2 cut(s) 362, 458
PspN4I GGNNCC 3 cut(s) 94, 464, 676
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 603
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 683
SaqAI TTAA 3 cut(s) 9, 534, 669
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 603
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 3 cut(s) 364, 460, 623
SduI GDGCHC 1 cut(s) 135
SexAI ACCWGGT 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 263, 668
SmoI CTYRAG 2 cut(s) 263, 668
Sse9I AATT 3 cut(s) 6, 285, 584
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 3 cut(s) 107, 523, 530
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 763
StyD4I CCNGG 3 cut(s) 362, 458, 621
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 2 cut(s) 175, 252
TaqI TCGA 6 cut(s) 34, 158, 205, 237, 567, 691
TasI AATT 3 cut(s) 6, 285, 584
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 9, 534, 669
Tru9I TTAA 3 cut(s) 9, 534, 669
TspDTI ATGAA 2 cut(s) 242, 337
TspGWI ACGGA 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 584
XceI RCATGY 2 cut(s) 212, 742
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.