Rw7G027910

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000182
Physical Location & Seq
Reverse (-)
36977826 .. 36979444
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027910.1

Sequence Viewer

Length: 756 bp
ATGGCCTATAGTCCAAACGCCTTGGCTCATTCTAGCTCCCTAAAAGCTAGAAACCCAGTTGTTTTCAACCCATATCCTCGCCCCAGCCAGAATGAACCATCGTTCATCACACAAATTCGTGGTGCTAAGGTAGTCGTTGATAGCAATGAAACAAAAGTGTTCGTCCCTAGACATGCAGTCACTAGTACGGAGCATCTCTGCAACTATGTCCTCACTGATAAGATTTTTGGCAAACGGGCTTCTCCCAAGAACATTGTTAGAAAATGCAACCGACACTGGGCTAATCTTCAAGGCACAGTCAGGATGTGTCAGCTCATTAATGGCTGGTACACTCTTGAGTTCACCTATCTCCAAGATGTGGAGTTTGTCCTGGAGCATAGCCCCTGGTTTGTCAAAGGAAGATTTATCAAACTAGATAAGAAGACAAAAAAGAACGAGAATTTTATTTTCACTAGAGTTTGTATGGAGATTGACCTTCGAGTTCCATTGAAACGAGTTCTAGTTGTAAGAGAGGAGGATGAGGAAAGTCTGCCTGCTGAACTAGCTTCTGACTTTGCGAAAGAGGATAGTGAGGACATGAATGAGTATGAGGTCAAGGTTGTGCATGGAAAGAGGGTTTTGATGTTAGCTGATAGTGATTCTGCAATGAGTTCAGGCTCTAAGAAAAGAACTAAGGACATGGTTGAGGATCATAGCATGGCAGATGCCGATGCTGAGAAGGACATCGCCTCTTCTCCTAAAGCCCCTAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

251

Amino Acids

28.58

Weight (kDa)

8.55

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 68 - 140 5.4e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AclWI GGATC 1 cut(s) 696
AcsI RAATTY 2 cut(s) 114, 439
AfaI GTAC 2 cut(s) 187, 329
AfiI CCNNNNNNNGG 2 cut(s) 277, 358
AgsI TTSAA 3 cut(s) 67, 290, 490
AhdI GACNNNNNGTC 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 182
AjnI CCWGG 2 cut(s) 369, 383
AluBI AGCT 5 cut(s) 36, 47, 313, 545, 629
AluI AGCT 5 cut(s) 36, 47, 313, 545, 629
AlwI GGATC 1 cut(s) 696
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 114, 439
AseI ATTAAT 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 371, 385
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 8 cut(s) 33, 48, 168, 183, 413, 453, 500, 542
BfmI CTRYAG 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 371, 385
BmeRI GACNNNNNGTC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 371, 385
BmrI ACTGGG 2 cut(s) 50, 286
BmsI GCATC 3 cut(s) 202, 694, 700
BmuI ACTGGG 2 cut(s) 50, 286
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 392
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 21, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 358
Bse1I ACTGG 2 cut(s) 56, 281
Bse3DI GCAATG 2 cut(s) 151, 651
BseBI CCWGG 2 cut(s) 371, 385
BseDI CCNNGG 2 cut(s) 21, 383
BseGI GGATG 2 cut(s) 309, 523
BseLI CCNNNNNNNGG 2 cut(s) 277, 358
BseMI GCAATG 2 cut(s) 151, 651
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 2 cut(s) 56, 281
BseRI GAGGAG 1 cut(s) 527
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 277, 358
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 688
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 706
BspPI GGATC 1 cut(s) 696
BsrDI GCAATG 2 cut(s) 151, 651
BsrI ACTGG 2 cut(s) 56, 281
BssECI CCNNGG 2 cut(s) 21, 383
BssMI GATC 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 371, 385
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 4 cut(s) 126, 660, 672, 714
BstF5I GGATG 2 cut(s) 309, 523
BstKTI GATC 1 cut(s) 691
BstMBI GATC 1 cut(s) 688
BstMWI GCNNNNNNNGC 2 cut(s) 542, 749
BstNI CCWGG 2 cut(s) 371, 385
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 369, 383
BstSFI CTRYAG 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 709
BtsCI GGATG 2 cut(s) 309, 523
BtsIMutI CAGTG 2 cut(s) 213, 274
Cac8I GCNNGC 1 cut(s) 534
Csp6I GTAC 2 cut(s) 186, 328
CviAII CATG 6 cut(s) 173, 577, 605, 679, 697, 753
CviQI GTAC 2 cut(s) 186, 328
DdeI CTNAG 4 cut(s) 126, 660, 672, 714
DpnI GATC 1 cut(s) 690
DpnII GATC 1 cut(s) 688
DriI GACNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 736
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 369, 383
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 176, 580, 608, 682, 700, 756
FaqI GGGAC 1 cut(s) 149
FatI CATG 6 cut(s) 172, 576, 604, 678, 696, 752
FokI GGATG 2 cut(s) 316, 530
FspBI CTAG 8 cut(s) 33, 48, 168, 183, 413, 453, 500, 542
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 6 cut(s) 176, 580, 608, 682, 700, 756
HinfI GANTC 1 cut(s) 638
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 330, 342
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 2 cut(s) 301, 335
Hpy8I GTNNAC 2 cut(s) 330, 342
HpyAV CCTTC 2 cut(s) 485, 712
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 176, 201, 267, 604, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 749
HpyF3I CTNAG 4 cut(s) 126, 660, 672, 714
Hsp92II CATG 6 cut(s) 176, 580, 608, 682, 700, 756
Kzo9I GATC 1 cut(s) 688
LmnI GCTCC 3 cut(s) 41, 190, 373
LweI GCATC 3 cut(s) 202, 694, 700
MaeI CTAG 8 cut(s) 33, 48, 168, 183, 413, 453, 500, 542
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 690
MboI GATC 1 cut(s) 688
MboII GAAGA 4 cut(s) 278, 411, 433, 723
MluCI AATT 2 cut(s) 114, 439
MseI TTAA 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 371, 385
MvaI CCWGG 2 cut(s) 371, 385
MwoI GCNNNNNNNGC 2 cut(s) 542, 749
NdeII GATC 1 cut(s) 688
NlaIII CATG 6 cut(s) 176, 580, 608, 682, 700, 756
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 176
PfeI GAWTC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 358
PfoI TCCNGGA 1 cut(s) 369
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 369, 383
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 369, 383
RsaI GTAC 2 cut(s) 187, 329
RsaNI GTAC 2 cut(s) 186, 328
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 1 cut(s) 688
ScrFI CCNGG 2 cut(s) 371, 385
SfaNI GCATC 3 cut(s) 202, 694, 700
SfcI CTRYAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 2 cut(s) 114, 439
SspMI CTAG 8 cut(s) 33, 48, 168, 183, 413, 453, 500, 542
StyD4I CCNGG 2 cut(s) 369, 383
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 478
TasI AATT 2 cut(s) 114, 439
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 220, 281
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 94, 108, 162, 593
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 220, 281
Van91I CCANNNNNTGG 1 cut(s) 358
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 2 cut(s) 114, 439
XceI RCATGY 1 cut(s) 176
XspI CTAG 8 cut(s) 33, 48, 168, 183, 413, 453, 500, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.