Rroxscaffold_1G00035780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000182
Physical Location & Seq
Reverse (-)
52082742 .. 52091248
8507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035780.1

Sequence Viewer

Length: 468 bp
ATGGGTTCACTTCCCCACAAGTTGGCAAGTTTCAGCATACGAAACAATGCTCTTGTTATCCTAGGTCATTCTTTTAAGGATGCATTTGCTAGGAGTGATGGACGCCTTGCTATCCCGACAAAAAAGAAGGAAATAATTGCAATCTCTGATTCATTGCGGGAGGTGGATCAATACTTGGATGCCGAGGAAGTACCTAAGCGGGAGAGATTGAAGCCGTATGTTTTGTTTATCCTAGATACTAGGATGCTCGATACGGCTCCTAACTGGATCGAAGAATGCCCAAAACAGATCGAACAATCGATCGGATATGAGCACTTCGATCACATTCTCGCCACCACCGACTCGTCACCACCAGGCAACCTCCCTTTCCACCTTATGCACTCCAAATTTGGGGAGATCTATACCCGCCAGTCACCTAACTCGACGAGCCTCTTAACGATATGGACAGCATCACCAAGCACCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

6.29

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AciI CCGC 3 cut(s) 157, 199, 406
AclWI GGATC 2 cut(s) 174, 275
AcsI RAATTY 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 22, 390
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 2 cut(s) 174, 275
ApoI RAATTY 1 cut(s) 386
AspA2I CCTAGG 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 339, 405, 444
AvrII CCTAGG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 199, 270
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 4 cut(s) 62, 90, 233, 240
BglII AGATCT 1 cut(s) 396
BlnI CCTAGG 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 4 cut(s) 70, 169, 234, 458
Bpu10I CCTNAGC 1 cut(s) 195
Bsa29I ATCGAT 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 61, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 390
Bse1I ACTGG 2 cut(s) 269, 409
Bse3DI GCAATG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 61, 183
BseGI GGATG 3 cut(s) 85, 184, 249
BseLI CCNNNNNNNGG 2 cut(s) 22, 390
BseMI GCAATG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 269, 409
Bsh1285I CGRYCG 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 22, 390
BsmI GAATGC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 6 cut(s) 166, 267, 288, 300, 319, 396
BspACI CCGC 3 cut(s) 157, 199, 406
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 174, 275
BsrDI GCAATG 1 cut(s) 152
BsrI ACTGG 2 cut(s) 269, 409
BssECI CCNNGG 2 cut(s) 61, 183
BssMI GATC 6 cut(s) 166, 267, 288, 300, 319, 396
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 463
BstACI GRCGYC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 85, 184, 249
BstKTI GATC 6 cut(s) 169, 270, 291, 303, 322, 399
BstMBI GATC 6 cut(s) 166, 267, 288, 300, 319, 396
BstMCI CGRYCG 1 cut(s) 303
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 299
BtsCI GGATG 3 cut(s) 85, 184, 249
ClaI ATCGAT 1 cut(s) 299
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 191
CviJI RGCY 3 cut(s) 214, 257, 429
CviKI_1 RGCY 3 cut(s) 214, 257, 429
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 195
DpnI GATC 6 cut(s) 168, 269, 290, 302, 321, 398
DpnII GATC 6 cut(s) 166, 267, 288, 300, 319, 396
Eco130I CCWWGG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 61
FaiI YATR 6 cut(s) 38, 219, 309, 377, 402, 442
FauI CCCGC 3 cut(s) 150, 192, 413
FokI GGATG 3 cut(s) 92, 191, 256
FspBI CTAG 4 cut(s) 62, 90, 233, 240
HgaI GACGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 103
HinfI GANTC 2 cut(s) 149, 341
HphI GGTGA 3 cut(s) 339, 405, 444
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 148, 305
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 83, 140, 379
HpyF3I CTNAG 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 103
Kzo9I GATC 6 cut(s) 166, 267, 288, 300, 319, 396
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 250, 339, 366, 422
LweI GCATC 4 cut(s) 70, 169, 234, 458
MaeI CTAG 4 cut(s) 62, 90, 233, 240
MaeIII GTNAC 2 cut(s) 345, 411
MalI GATC 6 cut(s) 168, 269, 290, 302, 321, 398
MboI GATC 6 cut(s) 166, 267, 288, 300, 319, 396
MboII GAAGA 1 cut(s) 284
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 135, 386
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 4 cut(s) 154, 178, 371, 440
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 2 cut(s) 75, 434
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 354
NdeII GATC 6 cut(s) 166, 267, 288, 300, 319, 396
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 345, 411
NsiI ATGCAT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 22
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 396
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 75, 434
Sau3AI GATC 6 cut(s) 166, 267, 288, 300, 319, 396
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 67, 165, 196, 363, 375, 418
SfaNI GCATC 4 cut(s) 70, 169, 234, 458
Sse9I AATT 2 cut(s) 135, 386
SsiI CCGC 3 cut(s) 157, 199, 406
SspMI CTAG 4 cut(s) 62, 90, 233, 240
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 6 cut(s) 249, 270, 291, 299, 318, 422
TasI AATT 2 cut(s) 135, 386
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 75, 434
Tru9I TTAA 2 cut(s) 75, 434
TseFI GTSAC 2 cut(s) 345, 411
Tsp45I GTSAC 2 cut(s) 345, 411
TspDTI ATGAA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 61
XspI CTAG 4 cut(s) 62, 90, 233, 240
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.