RchiOBHm_Chr7g0182921

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000182
Physical Location & Seq
Forward (+)
3975126 .. 3975957
832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16317

Sequence Viewer

Length: 591 bp
ATGTTTGCTAGAATTCTCATTGAACTAGACCTGCGCTACCCTATTAAGCGTACGGTCCTAGTCAATAATGGGAATGAACCCCCTTTTGTTGTTCTTGTCTCCTATGAGGTGATCTTTCAAGTGTGCTGCAGGTGTGGCCAGCACCGTACTGGGCTTCACTCTTGCCCGCTCAGGGCTTTTAATGACAACTTTTTCATGGTGGGGCATATTGGACAAGAACATGTTGTTTACCCTCCACAGATGGCTGATAATGATTTTATCAATCCCTTCCTCTCTGATGATGTCTCTATCATCTTTCCACAACCTTTAGTGGCTAATCAATTCCCCCTATCCTCTGATCTCCCTTCTGAAAACCATGATGGAGGATCTTGGAAGATTGTGTCCAGGAAGAGAAAAGGAAATGATGCTCTCTTTTCCAAGTTTGGGTCTCTCCCCAACAACTCGACAAAATACAACTTCAAAAACAACTCTCTTGTCACCCCAGGTCAATCTTTTGAGGAGGCTGCTGCTGGGAGTGAGGCTAGCCCTACAGACCCGACAAAGAAGAAGGAGGTTATTGTGCTCTCTGATTCATCTCAGGAGGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

196

Amino Acids

21.85

Weight (kDa)

5.72

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 120
Acc36I ACCTGC 2 cut(s) 39, 120
AccBSI CCGCTC 1 cut(s) 169
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 12
AfaI GTAC 2 cut(s) 52, 148
AfiI CCNNNNNNNGG 2 cut(s) 172, 423
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 23, 119, 460
AjnI CCWGG 2 cut(s) 383, 481
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 3 cut(s) 103, 289, 432
AlwI GGATC 1 cut(s) 373
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 126, 503, 506
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 121, 469
AsuNHI GCTAGC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 55
BalI TGGCCA 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 3 cut(s) 113, 490, 493
BccI CCATC 2 cut(s) 235, 353
BciT130I CCWGG 2 cut(s) 385, 483
BcoDI GTCTC 3 cut(s) 103, 289, 432
BfaI CTAG 4 cut(s) 9, 26, 59, 522
BfmI CTRYAG 2 cut(s) 127, 528
BfuAI ACCTGC 2 cut(s) 39, 120
BisI GCNGC 3 cut(s) 127, 504, 507
BlsI GCNGC 3 cut(s) 128, 505, 508
Bme1390I CCNGG 2 cut(s) 385, 483
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 385, 483
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 525
BmuI ACTGGG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 423
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 2 cut(s) 385, 483
BseDI CCNNGG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 172, 423
BseMII CTCAG 2 cut(s) 184, 590
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 3 cut(s) 113, 490, 493
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 564
BsiWI CGTACG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 172, 423
BsmAI GTCTC 3 cut(s) 103, 289, 432
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 3 cut(s) 111, 337, 365
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 183, 589
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 2 cut(s) 39, 120
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 3 cut(s) 111, 337, 365
Bst2UI CCWGG 2 cut(s) 385, 483
Bst4CI ACNGT 2 cut(s) 55, 146
Bst6I CTCTTC 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 140, 167, 523
BstDEI CTNAG 2 cut(s) 170, 576
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 114, 340, 368
BstMAI GTCTC 3 cut(s) 103, 289, 432
BstMBI GATC 3 cut(s) 111, 337, 365
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 385, 483
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 383, 481
BstSFI CTRYAG 2 cut(s) 127, 528
BstV1I GCAGC 3 cut(s) 113, 490, 493
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 1 cut(s) 138
BveI ACCTGC 2 cut(s) 39, 120
Cac8I GCNNGC 3 cut(s) 140, 167, 523
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 51, 147
CviAII CATG 3 cut(s) 196, 221, 356
CviJI RGCY 8 cut(s) 138, 154, 176, 245, 314, 503, 521, 525
CviKI_1 RGCY 8 cut(s) 138, 154, 176, 245, 314, 503, 521, 525
CviQI GTAC 2 cut(s) 51, 147
DdeI CTNAG 2 cut(s) 170, 576
DpnI GATC 3 cut(s) 113, 339, 367
DpnII GATC 3 cut(s) 111, 337, 365
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 383, 481
FaeI CATG 3 cut(s) 199, 224, 359
FaiI YATR 5 cut(s) 105, 197, 207, 222, 357
FatI CATG 3 cut(s) 195, 220, 355
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 127, 504, 507
Fsp4HI GCNGC 3 cut(s) 127, 504, 507
FspBI CTAG 4 cut(s) 9, 26, 59, 522
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 127, 504, 507
GsaI CCCAGC 1 cut(s) 513
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 199, 224, 359
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 1 cut(s) 569
HphI GGTGA 2 cut(s) 121, 469
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 4 cut(s) 277, 337, 349, 568
Hpy188III TCNNGA 1 cut(s) 578
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 277, 354, 541
HpyCH4III ACNGT 2 cut(s) 55, 146
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 170, 576
Hsp92II CATG 3 cut(s) 199, 224, 359
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 111, 337, 365
Lsp1109I GCAGC 3 cut(s) 113, 490, 493
LweI GCATC 1 cut(s) 394
MaeI CTAG 4 cut(s) 9, 26, 59, 522
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 113, 339, 367
MbiI CCGCTC 1 cut(s) 169
MboI GATC 3 cut(s) 111, 337, 365
MboII GAAGA 3 cut(s) 385, 400, 556
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 2 cut(s) 12, 320
MluNI TGGCCA 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 45, 180
Msp20I TGGCCA 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 385, 483
MvaI CCWGG 2 cut(s) 385, 483
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 3 cut(s) 111, 337, 365
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 3 cut(s) 199, 224, 359
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 120
PciI ACATGT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 569
Pfl23II CGTACG 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 3 cut(s) 128, 505, 508
PscI ACATGT 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 383, 481
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 383, 481
PspLI CGTACG 1 cut(s) 50
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 2 cut(s) 52, 148
RsaNI GTAC 2 cut(s) 51, 147
SaqAI TTAA 2 cut(s) 45, 180
SatI GCNGC 3 cut(s) 127, 504, 507
Sau3AI GATC 3 cut(s) 111, 337, 365
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 385, 483
SduI GDGCHC 1 cut(s) 564
SetI ASST 7 cut(s) 33, 111, 134, 307, 487, 555, 585
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 127, 528
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 12, 320
SsiI CCGC 1 cut(s) 167
SspMI CTAG 4 cut(s) 9, 26, 59, 522
StyD4I CCNGG 2 cut(s) 383, 481
TaaI ACNGT 2 cut(s) 55, 146
TaqI TCGA 1 cut(s) 443
TasI AATT 2 cut(s) 12, 320
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 2 cut(s) 45, 180
Tru9I TTAA 2 cut(s) 45, 180
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 3 cut(s) 126, 503, 506
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 90, 184, 561
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 4 cut(s) 9, 26, 59, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.