Rw1G000520

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000182
Physical Location & Seq
Reverse (-)
858575 .. 859790
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000520.1

Sequence Viewer

Length: 1050 bp
ATGGCTTTCAGCCCTAATGCGCGAGCACAAATCAGCCCCCCTAGAAGAACACCAGTGACGTTCAATCCTTTACCCAGACCAAACCGAAATGAGCCACCTTTTGTTACCAACATTGGTGGTACTAGGGTGGTGGTGGAAAATAGCCAAACCCAAGTTTTCGTCCCCAAACACTCCATAACCAATAAGGAGCACCTCAACAATTACTGCCTCTTAGCAAAAGTCTTCGGCAAGAAGGTCTCTCCTAGGAAAATAGCTAGGAAATGCAACAGAATGTGGGCTAATCTTCAAGGCACAGTCAAACAGATCCAAATGGCGAATGGCTGGTTCTCGCTAGATTTTGCTTACCTGCAGGACGTTGATTTTGTCCTGGAAAATAGGCCCTGGCTTGATGAACGTACTGAGAATAGTAAGAATTATGTCTTTGCAAGGGTCTGCATGGAAATAGACCTGAGGACTCCTCTGAAAAGGGTTCTGGTTATACGGGAGGAAGAGGAGGGAGACATACCGTTCCACCTAGTGAGCCCCCCTGCAAAAATCCTAGTCTCCTATGAGGCTATCTTTGAAATCTGTTTTGAGTGTGGCAGTCATAAGCACAGGATCCAAAGCTGCCCCCATAAGAAAAAAGAAAAACACTTTGTCATGGTTGACAAAGAAGAAGGGGATGGTGATATAGAACTAGAAGGAATGGAGGTGGATTCAGAGATTATGAAGCTAGTCTCCGACAAGGTGATGCTGTATTTCCCACAACCTGCCAAGACTGATGCTGAAATGGATGCAAATCCCGTTAACAACGACAACATGAATCCTCCGTCTCCTGGTTGGACTCATGTTAGGAGGAAAGGTCACACCACCCCAAAAGGTGCTGCAACTAAGAACAGTGGCAATGAGAAAGTGAAGGAAATGGAGAGGGTCTATGCTAGGAAAGGCAAGACTGTGCTGGAATCGAAGAGGGCTCTGGTTAAACCAGGAATAAGTTTTAGGGATGCTGCTAAAGGAAAGGGAACTATTGTGATCACGGACAAGGACACTGAAAGCTTTTTTAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

349

Amino Acids

39.74

Weight (kDa)

9.21

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 65 - 129 7.5e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 354, 757
AccII CGCG 1 cut(s) 22
AclWI GGATC 3 cut(s) 298, 592, 605
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 2 cut(s) 121, 397
AfiI CCNNNNNNNGG 1 cut(s) 815
AgsI TTSAA 3 cut(s) 64, 287, 563
AjnI CCWGG 4 cut(s) 366, 380, 814, 964
AluBI AGCT 4 cut(s) 254, 606, 712, 1035
AluI AGCT 4 cut(s) 254, 606, 712, 1035
Alw21I GWGCWC 2 cut(s) 28, 192
Alw26I GTCTC 5 cut(s) 241, 492, 547, 721, 816
AlwI GGATC 3 cut(s) 298, 592, 605
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 606, 863, 986
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspA2I CCTAGG 1 cut(s) 242
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 677, 739
AvrII CCTAGG 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BamHI GGATCC 1 cut(s) 597
BanII GRGCYC 2 cut(s) 524, 955
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 28, 192
BbvI GCAGC 3 cut(s) 593, 850, 973
BccI CCATC 1 cut(s) 656
BciT130I CCWGG 4 cut(s) 368, 382, 816, 966
BclI TGATCA 1 cut(s) 1011
BcoDI GTCTC 5 cut(s) 241, 492, 547, 721, 816
BfmI CTRYAG 1 cut(s) 347
BfuAI ACCTGC 2 cut(s) 354, 757
BisI GCNGC 3 cut(s) 607, 864, 987
BlnI CCTAGG 1 cut(s) 242
BlsI GCNGC 3 cut(s) 608, 865, 988
Bme1390I CCNGG 4 cut(s) 368, 382, 816, 966
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 4 cut(s) 368, 382, 816, 966
BmsI GCATC 4 cut(s) 720, 751, 763, 973
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BsaBI GATNNNNATC 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 242, 380
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 1 cut(s) 815
Bse1I ACTGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 889
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 4 cut(s) 368, 382, 816, 966
BseDI CCNNGG 2 cut(s) 242, 380
BseGI GGATG 3 cut(s) 667, 778, 988
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 815
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 2 cut(s) 390, 440
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 2 cut(s) 447, 506
BseXI GCAGC 3 cut(s) 593, 850, 973
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 28, 192
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 815
BsmAI GTCTC 5 cut(s) 241, 492, 547, 721, 816
BsmBI CGTCTC 1 cut(s) 816
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 379
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 4 cut(s) 28, 192, 524, 955
Bsp143I GATC 3 cut(s) 303, 597, 1011
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 391, 441
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 599
BspMAI CTGCAG 1 cut(s) 351
BspMI ACCTGC 2 cut(s) 354, 757
BspPI GGATC 3 cut(s) 298, 592, 605
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 889
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 242, 380
BssMI GATC 3 cut(s) 303, 597, 1011
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 4 cut(s) 368, 382, 816, 966
Bst4CI ACNGT 4 cut(s) 295, 507, 878, 934
Bst6I CTCTTC 2 cut(s) 483, 941
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 4 cut(s) 211, 399, 449, 870
BstF5I GGATG 3 cut(s) 667, 778, 988
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 306, 600, 1014
BstMAI GTCTC 5 cut(s) 241, 492, 547, 721, 816
BstMBI GATC 3 cut(s) 303, 597, 1011
BstNI CCWGG 4 cut(s) 368, 382, 816, 966
BstSCI CCNGG 4 cut(s) 366, 380, 814, 964
BstSFI CTRYAG 1 cut(s) 347
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 593, 850, 973
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 303, 597
BstYI RGATCY 2 cut(s) 303, 597
Bsu36I CCTNAGG 1 cut(s) 449
BsuRI GGCC 1 cut(s) 379
BtsCI GGATG 3 cut(s) 667, 778, 988
BtsIMutI CAGTG 3 cut(s) 60, 883, 1026
BveI ACCTGC 2 cut(s) 354, 757
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 120, 396
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 4 cut(s) 436, 640, 799, 827
CviQI GTAC 2 cut(s) 120, 396
DdeI CTNAG 4 cut(s) 211, 399, 449, 870
DpnI GATC 3 cut(s) 305, 599, 1013
DpnII GATC 3 cut(s) 303, 597, 1011
DraIII CACNNNGTG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 483, 941
EarI CTCTTC 2 cut(s) 483, 941
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 524, 955
Eco31I GGTCTC 1 cut(s) 241
Eco81I CCTNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 4 cut(s) 366, 380, 814, 964
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 524, 955
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 816
FaeI CATG 4 cut(s) 439, 643, 802, 830
FaqI GGGAC 1 cut(s) 146
FatI CATG 4 cut(s) 435, 639, 798, 826
FbaI TGATCA 1 cut(s) 1011
Fnu4HI GCNGC 3 cut(s) 607, 864, 987
FokI GGATG 3 cut(s) 674, 785, 995
FriOI GRGCYC 2 cut(s) 524, 955
Fsp4HI GCNGC 3 cut(s) 607, 864, 987
GlaI GCGC 1 cut(s) 21
GluI GCNGC 3 cut(s) 607, 864, 987
HaeIII GGCC 1 cut(s) 379
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 439, 643, 802, 830
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 646, 787
HindII GTYRAC 2 cut(s) 646, 787
HindIII AAGCTT 1 cut(s) 1033
HinfI GANTC 5 cut(s) 454, 695, 802, 823, 941
HpaI GTTAAC 1 cut(s) 787
HphI GGTGA 2 cut(s) 677, 739
Hpy166II GTNNAC 2 cut(s) 646, 787
Hpy188I TCNGA 3 cut(s) 462, 700, 721
Hpy8I GTNNAC 2 cut(s) 646, 787
HpyAV CCTTC 4 cut(s) 226, 650, 674, 889
HpyCH4III ACNGT 4 cut(s) 295, 507, 878, 934
HpyCH4IV ACGT 3 cut(s) 59, 354, 394
HpyCH4V TGCA 7 cut(s) 264, 349, 425, 435, 530, 776, 866
HpyF3I CTNAG 4 cut(s) 211, 399, 449, 870
HpySE526I ACGT 3 cut(s) 59, 354, 394
Hsp92II CATG 4 cut(s) 439, 643, 802, 830
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 1011
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 3 cut(s) 303, 597, 1011
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 3 cut(s) 593, 850, 973
LweI GCATC 4 cut(s) 720, 751, 763, 973
MaeII ACGT 3 cut(s) 59, 354, 394
MaeIII GTNAC 3 cut(s) 55, 103, 842
MalI GATC 3 cut(s) 305, 599, 1013
MboI GATC 3 cut(s) 303, 597, 1011
MboII GAAGA 6 cut(s) 57, 214, 275, 500, 665, 958
MflI RGATCY 2 cut(s) 303, 597
MhlI GDGCHC 4 cut(s) 28, 192, 524, 955
MluCI AATT 2 cut(s) 199, 412
MlyI GAGTC 2 cut(s) 448, 817
MmeI TCCRAC 2 cut(s) 744, 800
MseI TTAA 3 cut(s) 786, 960, 1041
MspR9I CCNGG 4 cut(s) 368, 382, 816, 966
MvaI CCWGG 4 cut(s) 368, 382, 816, 966
MvnI CGCG 1 cut(s) 22
NdeII GATC 3 cut(s) 303, 597, 1011
NlaIII CATG 4 cut(s) 439, 643, 802, 830
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 55, 842
PfeI GAWTC 3 cut(s) 695, 802, 941
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 3 cut(s) 608, 865, 988
PleI GAGTC 2 cut(s) 448, 817
PpsI GAGTC 2 cut(s) 448, 817
Psp6I CCWGG 4 cut(s) 366, 380, 814, 964
PspGI CCWGG 4 cut(s) 366, 380, 814, 964
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 378
PstI CTGCAG 1 cut(s) 351
PsuI RGATCY 2 cut(s) 303, 597
RsaI GTAC 2 cut(s) 121, 397
RsaNI GTAC 2 cut(s) 120, 396
SaqAI TTAA 3 cut(s) 786, 960, 1041
SatI GCNGC 3 cut(s) 607, 864, 987
Sau3AI GATC 3 cut(s) 303, 597, 1011
Sau96I GGNCC 1 cut(s) 378
SbfI CCTGCAGG 1 cut(s) 351
SchI GAGTC 2 cut(s) 448, 817
ScrFI CCNGG 4 cut(s) 368, 382, 816, 966
SdaI CCTGCAGG 1 cut(s) 351
SduI GDGCHC 4 cut(s) 28, 192, 524, 955
SfaNI GCATC 4 cut(s) 720, 751, 763, 973
SfcI CTRYAG 1 cut(s) 347
Sse8387I CCTGCAGG 1 cut(s) 351
Sse9I AATT 2 cut(s) 199, 412
StyD4I CCNGG 4 cut(s) 366, 380, 814, 964
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 295, 507, 878, 934
TaiI ACGT 3 cut(s) 62, 357, 397
TaqI TCGA 1 cut(s) 944
TasI AATT 2 cut(s) 199, 412
TfiI GAWTC 3 cut(s) 695, 802, 941
Tru1I TTAA 3 cut(s) 786, 960, 1041
Tru9I TTAA 3 cut(s) 786, 960, 1041
TscAI CASTG 3 cut(s) 60, 883, 1033
TseFI GTSAC 2 cut(s) 55, 842
TseI GCWGC 3 cut(s) 606, 863, 986
Tsp45I GTSAC 2 cut(s) 55, 842
TspDTI ATGAA 3 cut(s) 405, 722, 815
TspGWI ACGGA 2 cut(s) 798, 1031
TspRI CASTG 3 cut(s) 60, 883, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.