Rh7CG348800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000182
Physical Location & Seq
Reverse (-)
39528994 .. 39529540
547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG348800.1

Sequence Viewer

Length: 453 bp
ATGCCAATAAAGGAAAAGCTGTTAAGACAGCTAAGCCCTGGAGTATCCTTCAAAGACATGGCTCTAGGTCAAGAAATAGTTATTGGTAGCCTCAGAGGACATGCCGCTGGACAACCTGCGAAGAGTGTCTCATCTAGCGATGAGGAAGTTGTTAGATCTTCTTCTCATAACTCTAGCTTAGTTATTTCTTACTCTTCTTTCCCTGAAATTGCAAAATTATATGATAACCATGACTTTAGAATTAACCATACTTTGGAGGAGGATAGTGAGGACATGAATGAGTATGAGGTCAAGGTTGTGCATGGAAAGAGGGTTCTGATGTTAGCTGATAGTGAATCTGCAATGAGTTCAGGCTCTAAGAAAAGAACTAAGGACATGGCTGAGGATCATAGCATGGCAAATGCCGATGCTGAGAAGGACATCGCCTCTTCTCCTAAGGCCCCTAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.38

Weight (kDa)

5.67

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 4 cut(s) 19, 31, 177, 326
AluI AGCT 4 cut(s) 19, 31, 177, 326
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 393
AoxI GGCC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 439
AxyI CCTNAGG 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 65, 135, 174
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 55
BglII AGATCT 1 cut(s) 155
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 106, 372, 402
BseRI GAGGAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 155, 385
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 3 cut(s) 105, 373, 403
BspLI GGNNCC 1 cut(s) 441
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 155, 385
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 3 cut(s) 116, 199, 433
BstDEI CTNAG 8 cut(s) 32, 92, 178, 357, 369, 381, 411, 435
BstKTI GATC 2 cut(s) 158, 388
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 155, 385
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 440
BtgZI GCGATG 2 cut(s) 153, 406
BveI ACCTGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 439
CviAII CATG 8 cut(s) 58, 101, 230, 274, 302, 376, 394, 450
DdeI CTNAG 8 cut(s) 32, 92, 178, 357, 369, 381, 411, 435
DpnI GATC 2 cut(s) 157, 387
DpnII GATC 2 cut(s) 155, 385
Eam1104I CTCTTC 3 cut(s) 116, 199, 433
EarI CTCTTC 3 cut(s) 116, 199, 433
Eco81I CCTNAGG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 8 cut(s) 61, 104, 233, 277, 305, 379, 397, 453
FatI CATG 8 cut(s) 57, 100, 229, 273, 301, 375, 393, 449
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 3 cut(s) 65, 135, 174
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 440
Hin1II CATG 8 cut(s) 61, 104, 233, 277, 305, 379, 397, 453
HinfI GANTC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 95, 318
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 58, 409
HpyCH4V TGCA 3 cut(s) 212, 301, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 8 cut(s) 32, 92, 178, 357, 369, 381, 411, 435
Hsp92II CATG 8 cut(s) 61, 104, 233, 277, 305, 379, 397, 453
Kzo9I GATC 2 cut(s) 155, 385
LpnPI CCDG 6 cut(s) 24, 51, 93, 129, 216, 336
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 65, 135, 174
MalI GATC 2 cut(s) 157, 387
MboI GATC 2 cut(s) 155, 385
MboII GAAGA 5 cut(s) 133, 150, 153, 186, 420
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 207, 215, 240
MseI TTAA 2 cut(s) 23, 243
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 2 cut(s) 155, 385
NlaIII CATG 8 cut(s) 61, 104, 233, 277, 305, 379, 397, 453
NlaIV GGNNCC 1 cut(s) 441
NspI RCATGY 1 cut(s) 104
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 1 cut(s) 155
SaqAI TTAA 2 cut(s) 23, 243
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 155, 385
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 39
SetI ASST 8 cut(s) 21, 33, 70, 118, 179, 291, 297, 328
SfaNI GCATC 1 cut(s) 397
Sse9I AATT 3 cut(s) 207, 215, 240
SsiI CCGC 1 cut(s) 105
SspMI CTAG 3 cut(s) 65, 135, 174
StyD4I CCNGG 1 cut(s) 37
TasI AATT 3 cut(s) 207, 215, 240
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 23, 243
Tru9I TTAA 2 cut(s) 23, 243
TspDTI ATGAA 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 253
XceI RCATGY 1 cut(s) 104
XspI CTAG 3 cut(s) 65, 135, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.