RLG00000005042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000182
Physical Location & Seq
Forward (+)
64550567 .. 64551049
483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005042

Sequence Viewer

Length: 483 bp
ATGAGTGGTTTAGTCAGAGATGGCCTCTCTTTCAAAGATGTTACTAGGGGTGGTATCATTATTGGTGGCCCGCTTAGGACTATGAATAAGATTGGAAATTCTGCAGCTGATCTTTCTCCCAACTCCCAGGACTTGATGAGTGGCTCTTTACACTTTAATGATCCTAAGCCTCTTCTTTCTTTCTCTTCATTCCCTAATATTGCTAAACTCTATGCCTCTCCTGATGTTGACAACTATATCTCGAGGAATTACAATCCGGATTCAACATACTCCCCAACTGATGTTGTTAAGTTTTATAATAGCTTCTTTAATAACCCTTTATCTTACTCTCAAGACAACTTTATGGATGCCAAAGAGGATGATGAAAATGCTTTCATCAATAATCTAATTGCTCCTGAAAATTCTATCGTGGAGGCTTGGGACAACGACAACCTGGAAGATCACATGGAAGTTAGCTCTGGATATCGTAGCCCACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.77

Weight (kDa)

4.42

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 2 cut(s) 97, 400
AgsI TTSAA 2 cut(s) 34, 264
AjnI CCWGG 2 cut(s) 126, 432
AluBI AGCT 3 cut(s) 107, 303, 456
AluI AGCT 3 cut(s) 107, 303, 456
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 241
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 22, 67
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 97, 400
AspS9I GGNCC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 241
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 128, 434
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 128, 434
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 2 cut(s) 128, 434
BmsI GCATC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bpu10I CCTNAGC 2 cut(s) 74, 165
BpuEI CTTGAG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 128, 434
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 352, 364
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 2 cut(s) 24, 69
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 2 cut(s) 24, 69
BsoBI CYCGRG 1 cut(s) 241
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 109, 160, 439
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 24, 69
BspEI TCCGGA 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 109, 160, 439
Bst2UI CCWGG 2 cut(s) 128, 434
Bst6I CTCTTC 2 cut(s) 177, 190
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 74, 165
BstF5I GGATG 2 cut(s) 352, 364
BstKTI GATC 3 cut(s) 112, 163, 442
BstMBI GATC 3 cut(s) 109, 160, 439
BstNI CCWGG 2 cut(s) 128, 434
BstSCI CCNGG 2 cut(s) 126, 432
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 24, 69
BtsCI GGATG 2 cut(s) 352, 364
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 1 cut(s) 445
CviJI RGCY 9 cut(s) 24, 69, 107, 144, 169, 303, 416, 456, 471
CviKI_1 RGCY 9 cut(s) 24, 69, 107, 144, 169, 303, 416, 456, 471
DdeI CTNAG 2 cut(s) 74, 165
DpnI GATC 3 cut(s) 111, 162, 441
DpnII GATC 3 cut(s) 109, 160, 439
Eam1104I CTCTTC 2 cut(s) 177, 190
EarI CTCTTC 2 cut(s) 177, 190
Eco32I GATATC 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 126, 432
EcoRV GATATC 1 cut(s) 464
FaeI CATG 1 cut(s) 448
FaiI YATR 7 cut(s) 83, 213, 237, 268, 297, 344, 446
FaqI GGGAC 1 cut(s) 434
FatI CATG 1 cut(s) 444
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 359, 371
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 24, 69
HapII CCGG 1 cut(s) 257
Hin1II CATG 1 cut(s) 448
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 6 cut(s) 221, 241, 257, 332, 395, 459
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 74, 165
Hsp92II CATG 1 cut(s) 448
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 109, 160, 439
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 8 cut(s) 113, 140, 234, 270, 408, 419, 444, 446
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 111, 162, 441
MboI GATC 3 cut(s) 109, 160, 439
MboII GAAGA 3 cut(s) 164, 177, 449
MluCI AATT 4 cut(s) 97, 247, 387, 400
MnlI CCTC 6 cut(s) 35, 180, 226, 237, 349, 406
MroI TCCGGA 1 cut(s) 256
MseI TTAA 3 cut(s) 156, 288, 309
MslI CAYNNNNRTG 2 cut(s) 156, 478
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 128, 434
MvaI CCWGG 2 cut(s) 128, 434
NdeII GATC 3 cut(s) 109, 160, 439
NlaIII CATG 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 241
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 126, 432
PspGI CCWGG 2 cut(s) 126, 432
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 156, 478
SaqAI TTAA 3 cut(s) 156, 288, 309
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 109, 160, 439
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 128, 434
SetI ASST 4 cut(s) 109, 305, 435, 458
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 102
Sfr274I CTCGAG 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 241
SmiMI CAYNNNNRTG 2 cut(s) 156, 478
SmlI CTYRAG 2 cut(s) 241, 330
SmoI CTYRAG 2 cut(s) 241, 330
Sse9I AATT 4 cut(s) 97, 247, 387, 400
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 126, 432
TaqI TCGA 1 cut(s) 242
TasI AATT 4 cut(s) 97, 247, 387, 400
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 3 cut(s) 156, 288, 309
Tru9I TTAA 3 cut(s) 156, 288, 309
TscAI CASTG 1 cut(s) 480
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 98, 177, 364, 378
TspRI CASTG 1 cut(s) 480
XapI RAATTY 2 cut(s) 97, 400
XhoI CTCGAG 1 cut(s) 241
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.