Rmu_sc0005046.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005046.1
OG0000182
Physical Location & Seq
Forward (+)
95035 .. 99114
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005046.1_g000013.1.cds

Sequence Viewer

Length: 591 bp
atggagatagatcttaggactcctctgaagagtgtccaagtggttcgagaagaagatgaaggtgacttgccatttaatatggatgatacaaaaggacatggtaacatcatcattggtgacaagaaagcaaaaagcaatgttgagggctctaggaaaagttcatcatctagtggggaggagatggtgaggtcttctaatgatgatagctatgttatatgttattcttctcttcctgaaatagctaaactttatgttcacctaacatgttgtatgagaacttttgtgatagatgataaggatatgaatgagtttaaggttaagatgattaatggtagcaggagtttggtgtttgctgttgatagcttcatgatgggtttcgactccaaaaggaagaccagagatattactgaagataagagtatggctaatactgatgctacggacctgcctggcggtagcttggtgcatggcgttgtggtcagtggcgactgtcttcctaggttgagggaggagtcttgcttgcaagatggaaagggagaagttctgctagcggagttgcgcttagcggagactgtcccgcttgcaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

5.0

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 453
AciI CCGC 4 cut(s) 453, 551, 566, 578
AcuI CTGAAG 2 cut(s) 47, 429
AflIII ACRYGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 4 cut(s) 207, 242, 363, 459
AluI AGCT 4 cut(s) 207, 242, 363, 459
Alw26I GTCTC 1 cut(s) 563
AseI ATTAAT 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 497
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 4 cut(s) 74, 128, 196, 248
AsuNHI GCTAGC 1 cut(s) 547
AvaII GGWCC 1 cut(s) 442
AvrII CCTAGG 1 cut(s) 497
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 3 cut(s) 183, 398, 485
BccI CCATC 3 cut(s) 175, 364, 521
BciT130I CCWGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 4 cut(s) 150, 168, 498, 548
BfuAI ACCTGC 1 cut(s) 453
BglII AGATCT 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 497
BlpI GCTNAGC 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 551
BpiI GAAGAC 3 cut(s) 183, 398, 485
Bpu1102I GCTNAGC 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 142
BseRI GAGGAG 3 cut(s) 12, 191, 524
BslFI GGGAC 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 562
BspACI CCGC 4 cut(s) 453, 551, 566, 578
BspHI TCATGA 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 453
BspOI GCTAGC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 491, 574
Bst6I CTCTTC 2 cut(s) 23, 234
BstC8I GCNNGC 3 cut(s) 521, 549, 582
BstDEI CTNAG 2 cut(s) 14, 562
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 448
BstV2I GAAGAC 3 cut(s) 183, 398, 485
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 521, 549, 582
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 561
Cfr13I GGNCC 1 cut(s) 442
CviAII CATG 4 cut(s) 98, 264, 367, 467
CviJI RGCY 6 cut(s) 147, 207, 242, 363, 425, 459
CviKI_1 RGCY 6 cut(s) 147, 207, 242, 363, 425, 459
DdeI CTNAG 2 cut(s) 14, 562
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 23, 234
EarI CTCTTC 2 cut(s) 23, 234
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 2 cut(s) 47, 429
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 4 cut(s) 101, 267, 370, 470
FaqI GGGAC 1 cut(s) 560
FatI CATG 4 cut(s) 97, 263, 366, 466
FauI CCCGC 1 cut(s) 585
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 4 cut(s) 150, 168, 498, 548
GlaI GCGC 1 cut(s) 560
HhaI GCGC 1 cut(s) 561
Hin1II CATG 4 cut(s) 101, 267, 370, 470
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HinfI GANTC 3 cut(s) 19, 380, 512
HphI GGTGA 4 cut(s) 74, 128, 196, 248
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 47, 233, 367
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 491, 574
HpyCH4V TGCA 3 cut(s) 466, 523, 584
HpyF3I CTNAG 2 cut(s) 14, 562
Hsp92II CATG 4 cut(s) 101, 267, 370, 470
HspAI GCGC 1 cut(s) 559
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 246, 322, 409, 435, 458, 462
LweI GCATC 1 cut(s) 424
MaeI CTAG 4 cut(s) 150, 168, 498, 548
MaeIII GTNAC 3 cut(s) 62, 101, 116
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 9 cut(s) 40, 62, 65, 183, 216, 221, 403, 422, 485
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 149
MlyI GAGTC 3 cut(s) 13, 374, 521
MnlI CCTC 6 cut(s) 33, 136, 169, 180, 498, 502
MseI TTAA 4 cut(s) 75, 312, 318, 327
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
NdeII GATC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 4 cut(s) 101, 267, 370, 470
NmuCI GTSAC 2 cut(s) 62, 116
NspI RCATGY 1 cut(s) 267
PagI TCATGA 1 cut(s) 366
PciI ACATGT 1 cut(s) 263
PleI GAGTC 3 cut(s) 13, 374, 520
PpsI GAGTC 3 cut(s) 13, 374, 520
PscI ACATGT 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 442
PsuI RGATCY 1 cut(s) 10
SaqAI TTAA 4 cut(s) 75, 312, 318, 327
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 3 cut(s) 13, 374, 521
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 442
SsiI CCGC 4 cut(s) 453, 551, 566, 578
SspMI CTAG 4 cut(s) 150, 168, 498, 548
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 491, 574
TaqI TCGA 2 cut(s) 46, 378
Tru1I TTAA 4 cut(s) 75, 312, 318, 327
Tru9I TTAA 4 cut(s) 75, 312, 318, 327
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 62, 116
Tsp45I GTSAC 2 cut(s) 62, 116
TspDTI ATGAA 4 cut(s) 72, 150, 317, 355
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 327
XceI RCATGY 1 cut(s) 267
XmaJI CCTAGG 1 cut(s) 497
XspI CTAG 4 cut(s) 150, 168, 498, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.