RLG00000028388

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000182
Physical Location & Seq
Forward (+)
22098041 .. 22102643
4603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028388

Sequence Viewer

Length: 726 bp
ATGAGCCCACTGGAGAGGAGAGTTTTTACTGCGAAGGGCGCGTCTGATGGTATCGTATATAAGATCACGGCTGCATTTAGGAGTGATCTTTCCCTCTTCAACAAGCCGATGGCTTTCAAAAGAGAGTCTCGACATGGTGTATTGATTCACTTCAACGACGAGTCTTGCCGTGATCGGACCGGAGAAGGACGGTGTCATTGCAGTGGGGATGGGCTTGATCACCGGAGGCACACGCTGGCATTCGTTCTTGTTTTCGTTCTCCGTTTGTGTGTTCAAGTCCAGATGCCGGCGTCTCAAGGTTTTGATTTTCGTTCTCGTCGCGCTCTTGGACGCCTTCGCCGGCGACTAGGAAAAGGTGTTCTTGGTCGGACGGCGCACTCATGGCTTAGTATCTCTGCCGGTGCTCGACCCAGGCTGTGGGCTAAAGCTACGTCTGTGATAATGCCGGGGGTGACTTTCAAGGATGTCGTGAAGCCAGAAGGTCCTGGGGAGACCAAAAAAGCTGCTAATAAGCAGAAGGAGGTGATTGCTATATCGTCGGATTCCTCCCAGGAAGTGGACCAATTTATGGATGCTTTTGATCCCCCTAAGATGGGGGATCTGGATGATATTATCAATACAGGAGAGCATGATTCCGAAGCAGGTCCTAGTGGAGCTAAGCCAACTTTCCCAACCTTCCCTAGTCATAATTTCGGATCAAACTCAAACATCGTTGGTCAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

9.65

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 632
AccB7I CCANNNNNTGG 3 cut(s) 417, 556, 568
AccII CGCG 2 cut(s) 41, 321
AclWI GGATC 3 cut(s) 575, 606, 703
AcyI GRCGYC 2 cut(s) 290, 331
AfiI CCNNNNNNNGG 6 cut(s) 286, 417, 556, 568, 592, 593
AgsI TTSAA 5 cut(s) 100, 118, 154, 275, 460
AjnI CCWGG 3 cut(s) 410, 484, 549
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 3 cut(s) 428, 503, 656
AluI AGCT 3 cut(s) 428, 503, 656
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 3 cut(s) 132, 297, 485
AlwI GGATC 3 cut(s) 575, 606, 703
ApeKI GCWGC 2 cut(s) 71, 503
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 3 cut(s) 41, 323, 376
AspS9I GGNCC 4 cut(s) 177, 482, 559, 644
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 3 cut(s) 212, 463, 535
AvaII GGWCC 4 cut(s) 177, 482, 559, 644
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 58, 490
BccI CCATC 4 cut(s) 41, 103, 203, 586
BceAI ACGGC 3 cut(s) 84, 153, 387
BciT130I CCWGG 3 cut(s) 412, 486, 551
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 132, 297, 485
BfaI CTAG 3 cut(s) 347, 648, 681
BfuAI ACCTGC 1 cut(s) 632
BisI GCNGC 2 cut(s) 72, 504
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 2 cut(s) 73, 505
Bme1390I CCNGG 4 cut(s) 412, 447, 486, 551
Bme18I GGWCC 4 cut(s) 177, 482, 559, 644
BmgT120I GGNCC 4 cut(s) 177, 482, 559, 644
BmrFI CCNGG 4 cut(s) 412, 447, 486, 551
BmsI GCATC 2 cut(s) 273, 562
BpmI CTGGAG 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 447
BsaHI GRCGYC 2 cut(s) 290, 331
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 4 cut(s) 410, 446, 485, 549
BsaWI WCCGGW 2 cut(s) 179, 222
Bsc4I CCNNNNNNNGG 6 cut(s) 286, 417, 556, 568, 592, 593
Bse118I RCCGGY 3 cut(s) 286, 339, 398
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 412, 486, 551
BseDI CCNNGG 4 cut(s) 410, 446, 485, 549
BseGI GGATG 4 cut(s) 214, 469, 577, 610
BseLI CCNNNNNNNGG 6 cut(s) 286, 417, 556, 568, 592, 593
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 58, 490
Bsh1236I CGCG 2 cut(s) 41, 321
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 6 cut(s) 180, 223, 287, 340, 399, 446
BslI CCNNNNNNNGG 6 cut(s) 286, 417, 556, 568, 592, 593
BsmAI GTCTC 3 cut(s) 132, 297, 485
BsmBI CGTCTC 1 cut(s) 297
BsmI GAATGC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 8, 406
Bsp143I GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
Bsp1720I GCTNAGC 1 cut(s) 657
BspFNI CGCG 2 cut(s) 41, 321
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 3 cut(s) 575, 606, 703
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 3 cut(s) 286, 339, 398
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 3 cut(s) 286, 339, 398
BssECI CCNNGG 4 cut(s) 410, 446, 485, 549
BssMI GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
BssNI GRCGYC 2 cut(s) 290, 331
Bst2UI CCWGG 3 cut(s) 412, 486, 551
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 2 cut(s) 290, 331
BstC8I GCNNGC 3 cut(s) 237, 288, 341
BstDEI CTNAG 3 cut(s) 386, 588, 657
BstF5I GGATG 4 cut(s) 214, 469, 577, 610
BstFNI CGCG 2 cut(s) 41, 321
BstHHI GCGC 3 cut(s) 41, 323, 376
BstKTI GATC 7 cut(s) 66, 88, 175, 220, 583, 601, 698
BstMAI GTCTC 3 cut(s) 132, 297, 485
BstMBI GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
BstMWI GCNNNNNNNGC 2 cut(s) 38, 382
BstNI CCWGG 3 cut(s) 412, 486, 551
BstSCI CCNGG 4 cut(s) 410, 445, 484, 549
BstUI CGCG 2 cut(s) 41, 321
BstV1I GCAGC 2 cut(s) 58, 490
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BtsCI GGATG 4 cut(s) 214, 469, 577, 610
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 8, 208
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 3 cut(s) 237, 288, 341
CfoI GCGC 3 cut(s) 41, 323, 376
Cfr10I RCCGGY 3 cut(s) 286, 339, 398
Cfr13I GGNCC 4 cut(s) 177, 482, 559, 644
CpoI CGGWCCG 1 cut(s) 177
CseI GACGC 3 cut(s) 30, 279, 339
CspI CGGWCCG 1 cut(s) 177
CviAII CATG 4 cut(s) 134, 381, 629, 723
DdeI CTNAG 3 cut(s) 386, 588, 657
DpnI GATC 7 cut(s) 65, 87, 174, 219, 582, 600, 697
DpnII GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 4 cut(s) 177, 482, 559, 644
EcoO109I RGGNCCY 2 cut(s) 482, 644
EcoRII CCWGG 3 cut(s) 410, 484, 549
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 4 cut(s) 137, 384, 632, 726
FaiI YATR 9 cut(s) 58, 60, 135, 382, 533, 569, 630, 687, 724
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 4 cut(s) 133, 380, 628, 722
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 72, 504
FokI GGATG 4 cut(s) 221, 476, 584, 617
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 72, 504
FspBI CTAG 3 cut(s) 347, 648, 681
GlaI GCGC 3 cut(s) 40, 322, 375
GluI GCNGC 2 cut(s) 72, 504
GsuI CTGGAG 1 cut(s) 32
HapII CCGG 6 cut(s) 180, 223, 287, 340, 399, 446
HgaI GACGC 3 cut(s) 30, 279, 339
HhaI GCGC 3 cut(s) 41, 323, 376
Hin1I GRCGYC 2 cut(s) 290, 331
Hin1II CATG 4 cut(s) 137, 384, 632, 726
Hin6I GCGC 3 cut(s) 39, 321, 374
HinP1I GCGC 3 cut(s) 39, 321, 374
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 5 cut(s) 125, 145, 161, 542, 632
HpaII CCGG 6 cut(s) 180, 223, 287, 340, 399, 446
HphI GGTGA 3 cut(s) 212, 463, 535
Hpy166II GTNNAC 2 cut(s) 559, 719
Hpy188I TCNGA 6 cut(s) 46, 177, 369, 541, 637, 695
Hpy188III TCNNGA 4 cut(s) 129, 280, 469, 602
Hpy8I GTNNAC 2 cut(s) 559, 719
Hpy99I CGWCG 3 cut(s) 161, 321, 541
HpyAV CCTTC 6 cut(s) 28, 179, 344, 473, 511, 685
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 74, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 382
HpyF3I CTNAG 3 cut(s) 386, 588, 657
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 2 cut(s) 290, 331
Hsp92II CATG 4 cut(s) 137, 384, 632, 726
HspAI GCGC 3 cut(s) 39, 321, 374
KroI GCCGGC 2 cut(s) 286, 339
KroNI GCCGGC 2 cut(s) 288, 341
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 2 cut(s) 58, 490
LweI GCATC 2 cut(s) 273, 562
MaeI CTAG 3 cut(s) 347, 648, 681
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 451
MalI GATC 7 cut(s) 65, 87, 174, 219, 582, 600, 697
MboI GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 8, 406
MluCI AATT 2 cut(s) 563, 688
MlyI GAGTC 2 cut(s) 134, 170
MmeI TCCRAC 2 cut(s) 347, 519
MnlI CCTC 5 cut(s) 9, 104, 219, 514, 556
MreI CGCCGGCG 1 cut(s) 339
MroNI GCCGGC 2 cut(s) 286, 339
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 6 cut(s) 180, 223, 287, 340, 399, 446
MspR9I CCNGG 4 cut(s) 412, 447, 486, 551
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 3 cut(s) 412, 486, 551
MvnI CGCG 2 cut(s) 41, 321
MwoI GCNNNNNNNGC 2 cut(s) 38, 382
NaeI GCCGGC 2 cut(s) 288, 341
NciI CCSGG 1 cut(s) 447
NdeII GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
NgoMIV GCCGGC 2 cut(s) 286, 339
NlaIII CATG 4 cut(s) 137, 384, 632, 726
NmuCI GTSAC 1 cut(s) 451
PctI GAATGC 1 cut(s) 239
PdiI GCCGGC 2 cut(s) 288, 341
PfeI GAWTC 3 cut(s) 145, 542, 632
PflFI GACNNNGTC 1 cut(s) 192
PflMI CCANNNNNTGG 3 cut(s) 417, 556, 568
PkrI GCNGC 2 cut(s) 73, 505
PleI GAGTC 2 cut(s) 133, 169
PpsI GAGTC 2 cut(s) 133, 169
PpuMI RGGWCCY 2 cut(s) 482, 644
Psp5II RGGWCCY 2 cut(s) 482, 644
Psp6I CCWGG 3 cut(s) 410, 484, 549
PspGI CCWGG 3 cut(s) 410, 484, 549
PspPI GGNCC 4 cut(s) 177, 482, 559, 644
PspPPI RGGWCCY 2 cut(s) 482, 644
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 201
Rsr2I CGGWCCG 1 cut(s) 177
RsrII CGGWCCG 1 cut(s) 177
SatI GCNGC 2 cut(s) 72, 504
Sau3AI GATC 7 cut(s) 63, 85, 172, 217, 580, 598, 695
Sau96I GGNCC 4 cut(s) 177, 482, 559, 644
SchI GAGTC 2 cut(s) 134, 170
ScrFI CCNGG 4 cut(s) 412, 447, 486, 551
SduI GDGCHC 2 cut(s) 8, 406
SfaNI GCATC 2 cut(s) 273, 562
SgrAI CRCCGGYG 1 cut(s) 339
SinI GGWCC 4 cut(s) 177, 482, 559, 644
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 2 cut(s) 563, 688
SspMI CTAG 3 cut(s) 347, 648, 681
StyD4I CCNGG 4 cut(s) 410, 445, 484, 549
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 130, 406
TasI AATT 2 cut(s) 563, 688
TfiI GAWTC 3 cut(s) 145, 542, 632
TscAI CASTG 2 cut(s) 15, 208
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 71, 503
Tsp45I GTSAC 1 cut(s) 451
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 15, 208
Tth111I GACNNNGTC 1 cut(s) 192
Van91I CCANNNNNTGG 3 cut(s) 417, 556, 568
VpaK11BI GGWCC 4 cut(s) 177, 482, 559, 644
XspI CTAG 3 cut(s) 347, 648, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.