Rw4G019370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000182
Physical Location & Seq
Reverse (-)
42616205 .. 42617227
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019370.1

Sequence Viewer

Length: 519 bp
ATGGAAATCGACCTCCGAACTCCTTTGAAGCGTGTTTTGGTGATCCATGAAGAAGATGAGGGAGACCTCCCTTTTGATATGGCGACTTCAAAAGTAACTGTTGCTTCCAGTGACAACAAGGCTAAAGGACCTCGGTCTGAAGGAAAAACCACTCCTGCAAAAGGCAAACAAGTTGTGGGAATGAAGAAGGATTCCTTGGTCAAACTAGGAATCTCTTTCAAAGATGCTGCGCAAGGTCATGGAGTCATTGTCATTAGTGACAATGAAGAGGAAAATGCTGACAAACAGTCCAAGTACTCATCTTCAAGCGATAAGGAAGTGTTTGAGAACTTTTGTGATGCTAGAGGGTTTGAATTTGTTAGCAAGGAGGAGGACATGAATGAATATGATATCAAGATGGTAGGTGGCAAAAAGGGGCTGTTTCTTAGGACTGACAGCTCAGACATGAGCACTGGATCAAGAAAATGTACTCTGGATATGGCTGAGGGCCATAGCATGGCAGATGCTGAGGAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.82

Weight (kDa)

4.93

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
AccB7I CCANNNNNTGG 1 cut(s) 496
AclWI GGATC 2 cut(s) 37, 463
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 296, 469
AfiI CCNNNNNNNGG 2 cut(s) 161, 496
AgsI TTSAA 5 cut(s) 28, 90, 220, 306, 353
AhdI GACNNNNNGTC 1 cut(s) 286
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 179, 211
AluBI AGCT 1 cut(s) 438
AluI AGCT 1 cut(s) 438
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 37, 463
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 128, 487
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 452
BbvCI CCTCAGC 2 cut(s) 483, 507
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 2 cut(s) 206, 342
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 128
BmeRI GACNNNNNGTC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 128, 487
BmsI GCATC 3 cut(s) 214, 328, 493
BoxI GACNNNNGTC 1 cut(s) 133
Bpu10I CCTNAGC 2 cut(s) 483, 507
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 131, 195
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 496
Bse1I ACTGG 2 cut(s) 108, 457
BseDI CCNNGG 2 cut(s) 131, 195
BseLI CCNNNNNNNGG 2 cut(s) 161, 496
BseMII CTCAG 3 cut(s) 453, 474, 498
BseNI ACTGG 2 cut(s) 108, 457
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 161, 496
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 42, 455
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 452, 475, 499
BspPI GGATC 2 cut(s) 37, 463
BspTNI GGTCTC 1 cut(s) 57
BsrI ACTGG 2 cut(s) 108, 457
BssECI CCNNGG 2 cut(s) 131, 195
BssMI GATC 2 cut(s) 42, 455
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 100, 288
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 425, 439, 483, 507
BstENI CCTNNNNNAGG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 45, 458
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 42, 455
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 115, 450
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 128, 487
Csp6I GTAC 2 cut(s) 295, 468
CviAII CATG 5 cut(s) 47, 239, 376, 445, 496
CviJI RGCY 5 cut(s) 122, 418, 438, 482, 489
CviKI_1 RGCY 5 cut(s) 122, 418, 438, 482, 489
CviQI GTAC 2 cut(s) 295, 468
DdeI CTNAG 4 cut(s) 425, 439, 483, 507
DpnI GATC 2 cut(s) 44, 457
DpnII GATC 2 cut(s) 42, 455
DriI GACNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 128
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 5 cut(s) 50, 242, 379, 448, 499
FaiI YATR 9 cut(s) 48, 80, 240, 377, 387, 446, 479, 492, 497
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 5 cut(s) 46, 238, 375, 444, 495
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 206, 342
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 489
HhaI GCGC 1 cut(s) 232
Hin1II CATG 5 cut(s) 50, 242, 379, 448, 499
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 3 cut(s) 191, 210, 243
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 17, 139, 442
Hpy188III TCNNGA 3 cut(s) 394, 459, 473
HpyAV CCTTC 2 cut(s) 134, 181
HpyCH4III ACNGT 2 cut(s) 100, 288
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 4 cut(s) 425, 439, 483, 507
Hsp92II CATG 5 cut(s) 50, 242, 379, 448, 499
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 42, 455
LpnPI CCDG 4 cut(s) 121, 168, 438, 458
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 3 cut(s) 214, 328, 493
MaeI CTAG 2 cut(s) 206, 342
MaeIII GTNAC 3 cut(s) 94, 110, 257
MalI GATC 2 cut(s) 44, 457
MboI GATC 2 cut(s) 42, 455
MboII GAAGA 5 cut(s) 62, 65, 196, 278, 294
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 1 cut(s) 353
MlyI GAGTC 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 2 cut(s) 42, 455
NlaIII CATG 5 cut(s) 50, 242, 379, 448, 499
NmuCI GTSAC 2 cut(s) 110, 257
NsbI TGCGCA 1 cut(s) 231
PfeI GAWTC 2 cut(s) 191, 210
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 128
PspPI GGNCC 2 cut(s) 128, 487
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 296, 469
RsaNI GTAC 2 cut(s) 295, 468
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 42, 455
Sau96I GGNCC 2 cut(s) 128, 487
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 452
SetI ASST 6 cut(s) 15, 69, 133, 238, 406, 440
SfaNI GCATC 3 cut(s) 214, 328, 493
SinI GGWCC 1 cut(s) 128
Sse9I AATT 1 cut(s) 353
SspMI CTAG 2 cut(s) 206, 342
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 100, 288
TaqI TCGA 1 cut(s) 9
TaqII GACCGA 1 cut(s) 123
TasI AATT 1 cut(s) 353
TatI WGTACW 2 cut(s) 294, 467
TfiI GAWTC 2 cut(s) 191, 210
TscAI CASTG 2 cut(s) 115, 457
TseFI GTSAC 2 cut(s) 110, 257
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 2 cut(s) 110, 257
TspDTI ATGAA 5 cut(s) 63, 197, 279, 392, 396
TspRI CASTG 2 cut(s) 115, 457
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 353
XspI CTAG 2 cut(s) 206, 342
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.