Rmu_co8277499.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8277499.1
OG0000182
Physical Location & Seq
Forward (+)
1 .. 582
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8277499.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
gatgatacaaaaggacatggtaacatcatcattggtgacaagaaagcaaaaagcaatgttgagggctctaggaaaagttcatcatctagtggggaggagatggtgaggtcttctaatgatgatagctatgttatatgttattcttctcttcctgaaatagctaaactttatgttcacctaacatgttgtatgagaacttttgtgatagatgataaggatatgaatgagtttaaggttaagatgattaatggtagcaggagtttggtgtttgctgttgatagcttcatgatgggtttcgactccaaaaggaagaccagagatattactgaagataagagtatggctaatactgatgctacggtgaaaatacaaggacaaaatgtatttttctggaaaatggggattacagtgcacggatcaatccttactgagcagcagaaaccaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.68

Weight (kDa)

7.87

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 182
AluBI AGCT 3 cut(s) 126, 161, 282
AluI AGCT 3 cut(s) 126, 161, 282
Alw21I GWGCWC 1 cut(s) 414
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 433
AseI ATTAAT 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 47, 115, 167, 373
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 102, 317
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 94, 283
BfaI CTAG 2 cut(s) 69, 87
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 102, 317
Bse3DI GCAATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 68, 414
Bsp143I GATC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 285
BspPI GGATC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 1 cut(s) 416
Bst4CI ACNGT 2 cut(s) 361, 409
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 429
BstKTI GATC 1 cut(s) 419
BstMBI GATC 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 102, 317
BtsIMutI CAGTG 1 cut(s) 414
CciI TCATGA 1 cut(s) 285
CviAII CATG 3 cut(s) 17, 183, 286
CviJI RGCY 5 cut(s) 66, 126, 161, 282, 344
CviKI_1 RGCY 5 cut(s) 66, 126, 161, 282, 344
DdeI CTNAG 1 cut(s) 429
DpnI GATC 1 cut(s) 418
DpnII GATC 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 3 cut(s) 20, 186, 289
FatI CATG 3 cut(s) 16, 182, 285
Fnu4HI GCNGC 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 2 cut(s) 69, 87
GluI GCNGC 1 cut(s) 434
Hin1II CATG 3 cut(s) 20, 186, 289
HinfI GANTC 1 cut(s) 299
HphI GGTGA 4 cut(s) 47, 115, 167, 373
Hpy166II GTNNAC 2 cut(s) 175, 412
Hpy188III TCNNGA 3 cut(s) 152, 286, 391
Hpy8I GTNNAC 2 cut(s) 175, 412
HpyCH4III ACNGT 2 cut(s) 361, 409
HpyCH4V TGCA 1 cut(s) 412
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 3 cut(s) 20, 186, 289
Kzo9I GATC 1 cut(s) 416
LpnPI CCDG 4 cut(s) 165, 241, 328, 376
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 69, 87
MaeIII GTNAC 2 cut(s) 20, 35
MalI GATC 1 cut(s) 418
MboI GATC 1 cut(s) 416
MboII GAAGA 5 cut(s) 102, 135, 140, 322, 341
MhlI GDGCHC 2 cut(s) 68, 414
MluCI AATT 1 cut(s) 445
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 3 cut(s) 55, 88, 99
MseI TTAA 4 cut(s) 231, 237, 246, 448
NdeII GATC 1 cut(s) 416
NlaIII CATG 3 cut(s) 20, 186, 289
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 1 cut(s) 186
PagI TCATGA 1 cut(s) 285
PciI ACATGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PscI ACATGT 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 246
SaqAI TTAA 4 cut(s) 231, 237, 246, 448
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 1 cut(s) 416
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 2 cut(s) 68, 414
SetI ASST 6 cut(s) 110, 128, 163, 180, 237, 284
SfaNI GCATC 1 cut(s) 343
Sse9I AATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 69, 87
TaaI ACNGT 2 cut(s) 361, 409
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 445
Tru1I TTAA 4 cut(s) 231, 237, 246, 448
Tru9I TTAA 4 cut(s) 231, 237, 246, 448
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 69, 236, 274
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 1 cut(s) 414
VneI GTGCAC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 246
XceI RCATGY 1 cut(s) 186
XspI CTAG 2 cut(s) 69, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.