Rmu_sc0000014.1_g000025

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000014.1
OG0000182
Physical Location & Seq
Reverse (-)
141515 .. 145001
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000014.1_g000025.1.cds

Sequence Viewer

Length: 570 bp
atggctgctgtcctctacaaggcagctgttcaacacgtggctgtaaggaccacaacagatgggaagttgggacctgcaattttcagcgaagtcaatcattatgcccctaaagccccttttggacagaagttgttcattcccaagacgaagatcttttcttggttgttgcacaaccgttcgattgctttgcttcatctccacgatcaaaatcctgcgatccactctctcctgtgggtagatatgcctccccctcctgaaggttttttctcccacttttccaaattttgccttgttggcaaaatttttgggaagcaactatctgctgatatcgtccttgagaagtgttctgagctctggacagacctgcagggctcagttaccatgaaccggttagtcaataactggtttagttttgagttctctatggaggaggatattgagtttgtcttgggaaggaggccttggtttatttgtagctgtctctttcggctccaaagatggaccccaagcttcgatccaactgtgaatcgtattgataagctcattgtctgggcgcgtcttccaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

189

Amino Acids

21.77

Weight (kDa)

8.96

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 82, 372
AccII CGCG 1 cut(s) 556
AclWI GGATC 2 cut(s) 211, 509
AcsI RAATTY 2 cut(s) 281, 300
AcuI CTGAAG 1 cut(s) 276
AcvI CACGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 19, 257, 387
AflIII ACRYGT 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 387
AgsI TTSAA 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 5 cut(s) 26, 352, 477, 510, 541
AluI AGCT 5 cut(s) 26, 352, 477, 510, 541
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 211, 509
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 2 cut(s) 5, 23
ApoI RAATTY 2 cut(s) 281, 300
AsiGI ACCGGT 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 3 cut(s) 48, 71, 501
AvaII GGWCC 3 cut(s) 48, 71, 501
BanII GRGCYC 2 cut(s) 354, 374
BbrPI CACGTG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 53, 492
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BcoDI GTCTC 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 2 cut(s) 82, 372
BglI GCCNNNNNGGC 1 cut(s) 294
BglII AGATCT 1 cut(s) 150
BisI GCNGC 2 cut(s) 6, 24
BlsI GCNGC 2 cut(s) 7, 25
Bme18I GGWCC 3 cut(s) 48, 71, 501
BmgT120I GGNCC 3 cut(s) 48, 71, 501
BmiI GGNNCC 3 cut(s) 72, 491, 503
BpiI GAAGAC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 257, 387
Bse118I RCCGGY 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 461
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 19, 257, 387
BseMII CTCAG 2 cut(s) 339, 387
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 460
BshTI ACCGGT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 19, 257, 387
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 354, 374
Bsp143I GATC 4 cut(s) 150, 202, 216, 514
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 340, 386
BspFNI CGCG 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 72, 491, 503
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 2 cut(s) 82, 372
BspPI GGATC 2 cut(s) 211, 509
BsrFI RCCGGY 1 cut(s) 387
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 4 cut(s) 150, 202, 216, 514
BssT1I CCWWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 176, 523
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 348, 373
BstENI CCTNNNNNAGG 2 cut(s) 17, 255
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 4 cut(s) 153, 205, 219, 517
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 4 cut(s) 150, 202, 216, 514
BstMWI GCNNNNNNNGC 2 cut(s) 110, 294
BstSFI CTRYAG 1 cut(s) 365
BstUI CGCG 1 cut(s) 556
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 551
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 460
BveI ACCTGC 2 cut(s) 82, 372
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 48, 71, 501
CseI GACGC 1 cut(s) 545
CspAI ACCGGT 1 cut(s) 387
CviAII CATG 1 cut(s) 382
DdeI CTNAG 2 cut(s) 348, 373
DpnI GATC 4 cut(s) 152, 204, 218, 516
DpnII GATC 4 cut(s) 150, 202, 216, 514
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 460
Eco24I GRGCYC 2 cut(s) 354, 374
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 3 cut(s) 48, 71, 501
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 352
EcoNI CCTNNNNNAGG 2 cut(s) 17, 255
EcoO109I RGGNCCY 1 cut(s) 71
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 461
EcoT38I GRGCYC 2 cut(s) 354, 374
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 1 cut(s) 385
FaiI YATR 4 cut(s) 102, 242, 383, 425
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 6, 24
FriOI GRGCYC 2 cut(s) 354, 374
Fsp4HI GCNGC 2 cut(s) 6, 24
GlaI GCGC 1 cut(s) 555
GluI GCNGC 2 cut(s) 6, 24
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 388
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 556
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 1 cut(s) 526
HpaII CCGG 1 cut(s) 388
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 254, 355
HpyAV CCTTC 2 cut(s) 251, 447
HpyCH4III ACNGT 2 cut(s) 176, 523
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 77, 169, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 294
HpyF3I CTNAG 2 cut(s) 348, 373
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 554
Kzo9I GATC 4 cut(s) 150, 202, 216, 514
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 35
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 152, 204, 218, 516
MboI GATC 4 cut(s) 150, 202, 216, 514
MboII GAAGA 2 cut(s) 160, 551
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 354, 374
MluCI AATT 4 cut(s) 78, 281, 300, 565
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 6 cut(s) 23, 255, 261, 421, 424, 450
MroXI GAANNNNTTC 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 556
MwoI GCNNNNNNNGC 2 cut(s) 110, 294
NdeII GATC 4 cut(s) 150, 202, 216, 514
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 3 cut(s) 72, 491, 503
PceI AGGCCT 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 526
PinAI ACCGGT 1 cut(s) 387
PkrI GCNGC 2 cut(s) 7, 25
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 71
PspCI CACGTG 1 cut(s) 37
PspN4I GGNNCC 3 cut(s) 72, 491, 503
PspPI GGNCC 3 cut(s) 48, 71, 501
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 354
SatI GCNGC 2 cut(s) 6, 24
Sau3AI GATC 4 cut(s) 150, 202, 216, 514
Sau96I GGNCC 3 cut(s) 48, 71, 501
SbfI CCTGCAGG 1 cut(s) 369
SdaI CCTGCAGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 354, 374
SetI ASST 9 cut(s) 28, 39, 76, 262, 354, 366, 479, 512, 543
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 3 cut(s) 48, 71, 501
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse8387I CCTGCAGG 1 cut(s) 369
Sse9I AATT 4 cut(s) 78, 281, 300, 565
SseBI AGGCCT 1 cut(s) 460
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 460
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 176, 523
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 179, 513
TasI AATT 4 cut(s) 78, 281, 300, 565
TfiI GAWTC 1 cut(s) 526
TseI GCWGC 2 cut(s) 5, 23
TspDTI ATGAA 3 cut(s) 124, 182, 398
VpaK11BI GGWCC 3 cut(s) 48, 71, 501
XagI CCTNNNNNAGG 2 cut(s) 17, 255
XapI RAATTY 2 cut(s) 281, 300
XmnI GAANNNNTTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.