Rh7AG157600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000182
Physical Location & Seq
Reverse (-)
12854386 .. 12855087
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG157600.1

Sequence Viewer

Length: 702 bp
ATGAGACCCCTCTCTTCGGTTTCCGCCAGACTCGTGATTACTCGGTATGTTAAATTTTTGCGTCTCCAGGTATGTCCTTTTCAGTTCTCAATGCTTTTTTTCTTTCCGTTTTTCTTGTTTATCTCTGTCTTGGGTTTGTTTACTTCTTGGTGGTTCATTTCTATTGGAGTTTTTGTTGCATGCCTAGTTAGCTACTACAATCCTAACTGCTTTAGTTTTAGCTTTCGTTCCGTTTTTCCAAGATTTCGCTCTGGGAATTGGATTCTTTTCTTCTGGGTTTGGTTAACCTCTTCTGGGTTCGTGCAAAACCCTTCGTTAACCACCATGATGACTCTTTCCTCTGCTATTTATAGCCCCCTGGATTGCGTTTTGCCTCAATCAAGCCTCCTATCTAATCCATTCCGTCAATCCCTTATTCAGCTTACTGTCTTCACTCACCCAATGGCTTTTAGTCCGAATGCGAGGGCTCAAGCTAGCTCGTCGCGAAACCCTTTTAGCTTTTGGCAAATTCCCTTTCCCCGGCCTAGAGCTAATGAACCCCCTCTTAGCATCAACATTGGTGATACTAAGGTTAGGGTGGATCAGAAAGAAACCCATGTCACCATCAAAAGACCCCCTTCTGATTATGCTGAGCACTATCGCCGGTACTGTTTGGTCGGAAGAATCTTTGGGAAACGACTTGATGCCGATACTGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

27.0

Weight (kDa)

10.29

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 484
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 588
AcsI RAATTY 2 cut(s) 53, 507
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 3 cut(s) 16, 294, 519
AjnI CCWGG 2 cut(s) 66, 357
AluBI AGCT 7 cut(s) 192, 222, 421, 473, 477, 498, 530
AluI AGCT 7 cut(s) 192, 222, 421, 473, 477, 498, 530
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 588
AoxI GGCC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 53, 507
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 3 cut(s) 428, 572, 592
AsuNHI GCTAGC 1 cut(s) 473
BaeI ACNNNNGTAYC 2 cut(s) 555, 588
BanII GRGCYC 1 cut(s) 469
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 636
BccI CCATC 1 cut(s) 611
BciT130I CCWGG 2 cut(s) 68, 359
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 3 cut(s) 185, 474, 525
BlpI GCTNAGC 1 cut(s) 630
Bme1390I CCNGG 3 cut(s) 68, 359, 520
BmrFI CCNGG 3 cut(s) 68, 359, 520
BmsI GCATC 2 cut(s) 558, 673
BmtI GCTAGC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 357, 518
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 294, 519
Bse118I RCCGGY 1 cut(s) 642
BseBI CCWGG 2 cut(s) 68, 359
BseDI CCNNGG 2 cut(s) 357, 518
BseLI CCNNNNNNNGG 3 cut(s) 16, 294, 519
BseMII CTCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 2 cut(s) 520, 643
BslI CCNNNNNNNGG 3 cut(s) 16, 294, 519
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 469, 636
Bsp143I GATC 1 cut(s) 580
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp68I TCGCGA 1 cut(s) 484
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 622
BspFNI CGCG 1 cut(s) 484
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 1 cut(s) 588
BsrFI RCCGGY 1 cut(s) 642
BssAI RCCGGY 1 cut(s) 642
BssECI CCNNGG 2 cut(s) 357, 518
BssMI GATC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 68, 359
Bst4CI ACNGT 3 cut(s) 427, 650, 694
Bst6I CTCTTC 2 cut(s) 19, 295
BstC8I GCNNGC 2 cut(s) 181, 475
BstDEI CTNAG 3 cut(s) 545, 567, 630
BstFNI CGCG 1 cut(s) 484
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 580
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 2 cut(s) 68, 359
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 66, 357, 518
BstUI CGCG 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 523
BtuMI TCGCGA 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 181, 475
Cfr10I RCCGGY 1 cut(s) 642
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 646
CviAII CATG 3 cut(s) 180, 325, 596
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 545, 567, 630
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 19, 295
EarI CTCTTC 2 cut(s) 19, 295
EciI GGCGGA 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 66, 357
EcoT38I GRGCYC 1 cut(s) 469
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 183, 328, 599
FaiI YATR 7 cut(s) 48, 73, 181, 326, 351, 597, 627
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FatI CATG 3 cut(s) 179, 324, 595
FriOI GRGCYC 1 cut(s) 469
FspBI CTAG 3 cut(s) 185, 474, 525
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 523
HapII CCGG 2 cut(s) 520, 643
HgaI GACGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 183, 328, 599
HincII GTYRAC 2 cut(s) 285, 318
HindII GTYRAC 2 cut(s) 285, 318
HinfI GANTC 4 cut(s) 30, 262, 331, 663
HpaI GTTAAC 2 cut(s) 285, 318
HpaII CCGG 2 cut(s) 520, 643
HphI GGTGA 3 cut(s) 428, 572, 592
Hpy166II GTNNAC 3 cut(s) 141, 285, 318
Hpy188I TCNGA 4 cut(s) 456, 585, 622, 659
Hpy188III TCNNGA 2 cut(s) 34, 483
Hpy8I GTNNAC 3 cut(s) 141, 285, 318
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 321, 627
HpyCH4III ACNGT 3 cut(s) 427, 650, 694
HpyCH4V TGCA 2 cut(s) 179, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 3 cut(s) 545, 567, 630
Hsp92II CATG 3 cut(s) 183, 328, 599
KspAI GTTAAC 2 cut(s) 285, 318
Kzo9I GATC 1 cut(s) 580
LweI GCATC 2 cut(s) 558, 673
MaeI CTAG 3 cut(s) 185, 474, 525
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 5 cut(s) 6, 262, 282, 421, 672
MhlI GDGCHC 2 cut(s) 469, 636
MluCI AATT 3 cut(s) 53, 256, 507
MlyI GAGTC 2 cut(s) 24, 325
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 7 cut(s) 20, 298, 349, 384, 395, 456, 552
MseI TTAA 3 cut(s) 51, 284, 317
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 2 cut(s) 520, 643
MspR9I CCNGG 3 cut(s) 68, 359, 520
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 68, 359
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 520
NdeII GATC 1 cut(s) 580
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 3 cut(s) 183, 328, 599
NmuCI GTSAC 1 cut(s) 598
NruI TCGCGA 1 cut(s) 484
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 262, 663
PleI GAGTC 2 cut(s) 24, 325
PpsI GAGTC 2 cut(s) 24, 325
Psp6I CCWGG 2 cut(s) 66, 357
PspGI CCWGG 2 cut(s) 66, 357
RruI TCGCGA 1 cut(s) 484
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 3 cut(s) 51, 284, 317
Sau3AI GATC 1 cut(s) 580
SchI GAGTC 2 cut(s) 24, 325
ScrFI CCNGG 3 cut(s) 68, 359, 520
SduI GDGCHC 2 cut(s) 469, 636
SfaNI GCATC 2 cut(s) 558, 673
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
SphI GCATGC 1 cut(s) 183
Sse9I AATT 3 cut(s) 53, 256, 507
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 185, 474, 525
StyD4I CCNGG 3 cut(s) 66, 357, 518
TaaI ACNGT 3 cut(s) 427, 650, 694
TasI AATT 3 cut(s) 53, 256, 507
TfiI GAWTC 2 cut(s) 262, 663
Tru1I TTAA 3 cut(s) 51, 284, 317
Tru9I TTAA 3 cut(s) 51, 284, 317
TseFI GTSAC 1 cut(s) 598
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 145, 549
TspGWI ACGGA 3 cut(s) 96, 220, 392
XapI RAATTY 2 cut(s) 53, 507
XceI RCATGY 1 cut(s) 183
XspI CTAG 3 cut(s) 185, 474, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.