Rmu_sc0005063.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005063.1
OG0000182
Physical Location & Seq
Forward (+)
60435 .. 60995
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005063.1_g000009.1.cds

Sequence Viewer

Length: 561 bp
atggccttcacttccaactctcaagctaaccttgctactagctcttttcgaccttttcccccaagacagtactttcctttcccacgttcctacaacgggaatgattctatccctgttgtcattggtgaaaccactatcaacattgataggtttgatgttcaagttgatatgccccctccacccatggagtttgatacccattactcccgtttctgtcttgttgggaagatttttgggcctctggtgccagctgacattgttttgagtaagtgtacggagctttggcaaaatctgaaagggaatatcaacatgagtcacctggccaacaattggtactactttgagttcgataacgaagaggatgtttacttcatacttgacaacagaccgtggtatatcaggagcaggctctttcaagtccagcgatggaccccagactttgatgctaccacctccattattgattggattatcgtctgggccagacttcccaatcttcctttaccccactggaatgacaagtctttgaaacactggctgagcacctgggtaactatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

186

Amino Acids

21.95

Weight (kDa)

5.48

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 321
AfaI GTAC 3 cut(s) 71, 274, 335
AfiI CCNNNNNNNGG 2 cut(s) 96, 330
AgsI TTSAA 3 cut(s) 161, 416, 529
AjnI CCWGG 2 cut(s) 318, 545
AluBI AGCT 4 cut(s) 26, 42, 251, 280
AluI AGCT 4 cut(s) 26, 42, 251, 280
Alw21I GWGCWC 1 cut(s) 545
AoxI GGCC 4 cut(s) 3, 236, 321, 480
AspS9I GGNCC 3 cut(s) 236, 429, 480
AsuHPI GGTGA 2 cut(s) 137, 308
AvaII GGWCC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 545
BccI CCATC 1 cut(s) 420
BciT130I CCWGG 2 cut(s) 320, 547
BfaI CTAG 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 539
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 320, 547
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 3 cut(s) 236, 429, 480
BmiI GGNNCC 2 cut(s) 246, 431
BmrFI CCNGG 2 cut(s) 320, 547
BmsI GCATC 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 183, 389, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 330
Bse1I ACTGG 2 cut(s) 515, 539
BseBI CCWGG 2 cut(s) 320, 547
BseDI CCNNGG 3 cut(s) 183, 389, 546
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 96, 330
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 2 cut(s) 515, 539
BshFI GGCC 4 cut(s) 5, 238, 323, 482
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 96, 330
BsnI GGCC 4 cut(s) 5, 238, 323, 482
Bsp1286I GDGCHC 1 cut(s) 545
Bsp1720I GCTNAGC 1 cut(s) 539
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 4 cut(s) 5, 238, 323, 482
BspCNI CTCAG 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 246, 431
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 2 cut(s) 515, 539
BssECI CCNNGG 3 cut(s) 183, 389, 546
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 320, 547
Bst4CI ACNGT 2 cut(s) 69, 390
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 249, 407
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 2 cut(s) 183, 389
BstF5I GGATG 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 32, 244
BstNI CCWGG 2 cut(s) 320, 547
BstSCI CCNGG 2 cut(s) 318, 545
BsuRI GGCC 4 cut(s) 5, 238, 323, 482
BtgI CCRYGG 2 cut(s) 183, 389
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 508, 532
Cac8I GCNNGC 2 cut(s) 249, 407
Cfr13I GGNCC 3 cut(s) 236, 429, 480
Csp6I GTAC 3 cut(s) 70, 273, 334
CviAII CATG 2 cut(s) 184, 310
CviQI GTAC 3 cut(s) 70, 273, 334
DdeI CTNAG 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 318, 545
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 187, 313
FaiI YATR 7 cut(s) 170, 185, 311, 374, 396, 557, 559
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 2 cut(s) 183, 309
FokI GGATG 1 cut(s) 374
FspBI CTAG 1 cut(s) 39
HaeIII GGCC 4 cut(s) 5, 238, 323, 482
Hin1II CATG 2 cut(s) 187, 313
HinfI GANTC 2 cut(s) 104, 313
HphI GGTGA 2 cut(s) 137, 308
Hpy166II GTNNAC 2 cut(s) 273, 367
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 2 cut(s) 273, 367
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 69, 390
HpyCH4IV ACGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 244
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 187, 313
LmnI GCTCC 2 cut(s) 277, 402
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 314, 550
MboII GAAGA 3 cut(s) 238, 368, 488
MfeI CAATTG 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 186, 249, 352, 463
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 320, 547
MunI CAATTG 1 cut(s) 328
MvaI CCWGG 2 cut(s) 320, 547
MwoI GCNNNNNNNGC 2 cut(s) 32, 244
NcoI CCATGG 1 cut(s) 183
NlaIII CATG 2 cut(s) 187, 313
NlaIV GGNNCC 2 cut(s) 246, 431
NmuCI GTSAC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 330
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 318, 545
PspGI CCWGG 2 cut(s) 318, 545
PspN4I GGNNCC 2 cut(s) 246, 431
PspPI GGNCC 3 cut(s) 236, 429, 480
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 71, 274, 335
RsaNI GTAC 3 cut(s) 70, 273, 334
RseI CAYNNNNRTG 1 cut(s) 513
Sau96I GGNCC 3 cut(s) 236, 429, 480
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 320, 547
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 318, 545
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 69, 390
TaiI ACGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 49, 348
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 2 cut(s) 515, 539
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 515, 539
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 429
XspI CTAG 1 cut(s) 39
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.