MD10G1046400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000182
Physical Location & Seq
Forward (+)
6224873 .. 6226485
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1046400.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGGAGGTCTAGGGTTTCTGCCCGCGAGGCGCCGCTGGTGTCCTCGCAATGTTCTGTTGTGGGTGTCCTTTAGGGTTTTCATATGGGTAAGAGATAATTGCCTTAGAGGTAAGGAGATCTTTGTTGATTACGTACTAGGTGAGTGCTTGGTTACCCTAATTAGGATTCCGATAATTGGGAATAGGTTAATCGTGAGTTCGAGTAGGTTAAGGTTAAGTGCAAACTGGTTTCTAGATAAGTGGGTGGTGAGTCCCGAGGAGTCGATTGAACTGCTGTATCCTCATTTCCCAGGTGTTATAGCTCTTTGGTGGTGTCTGGCAAATCGATGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.05

Weight (kDa)

9.55

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 34
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 162, 176
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 254
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 152, 259
AvaI CYCGRG 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BanI GGYRCC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 288
BfaI CTAG 3 cut(s) 11, 137, 233
BfoI RGCGCY 1 cut(s) 34
BfuI GTATCC 1 cut(s) 288
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 117
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 255, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 176
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 255, 289
BseLI CCNNNNNNNGG 2 cut(s) 162, 176
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 30
BshVI ATCGAT 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 162, 176
BsmFI GGGAC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 2 cut(s) 24, 34
BspDI ATCGAT 1 cut(s) 325
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 255, 289
BssMI GATC 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 151
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 289
BstSNI TACGTA 1 cut(s) 133
BstUI CGCG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 325
BsuI GTATCC 1 cut(s) 288
BsuTUI ATCGAT 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 134
CviJI RGCY 1 cut(s) 302
CviKI_1 RGCY 1 cut(s) 302
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 32
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
FaiI YATR 3 cut(s) 83, 85, 299
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 237
FauI CCCGC 1 cut(s) 31
FauNDI CATATG 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 3 cut(s) 11, 137, 233
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 34
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 3 cut(s) 166, 250, 260
HphI GGTGA 2 cut(s) 152, 259
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 193, 233, 254
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 31
HspAI GCGC 1 cut(s) 31
KasI GGCGCC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 22, 211, 276, 302, 303
MaeI CTAG 3 cut(s) 11, 137, 233
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MflI RGATCY 1 cut(s) 117
MluCI AATT 3 cut(s) 97, 159, 174
Mly113I GGCGCC 1 cut(s) 31
MlyI GAGTC 2 cut(s) 259, 269
MnlI CCTC 5 cut(s) 21, 54, 101, 250, 291
MseI TTAA 3 cut(s) 188, 209, 215
MspA1I CMGCKG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 28
NarI GGCGCC 1 cut(s) 31
NdeI CATATG 1 cut(s) 83
NdeII GATC 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 2 cut(s) 258, 268
PluTI GGCGCC 1 cut(s) 34
PpsI GAGTC 2 cut(s) 258, 268
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 188, 209, 215
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 117
SchI GAGTC 2 cut(s) 259, 269
ScrFI CCNGG 1 cut(s) 291
SetI ASST 9 cut(s) 10, 112, 135, 142, 188, 209, 215, 295, 304
SfoI GGCGCC 1 cut(s) 32
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 3 cut(s) 97, 159, 174
SsiI CCGC 2 cut(s) 24, 34
SspDI GGCGCC 1 cut(s) 30
SspMI CTAG 3 cut(s) 11, 137, 233
StyD4I CCNGG 1 cut(s) 289
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 200, 263, 325
TasI AATT 3 cut(s) 97, 159, 174
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 3 cut(s) 188, 209, 215
Tru9I TTAA 3 cut(s) 188, 209, 215
TspDTI ATGAA 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 3 cut(s) 11, 137, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.