Rmu_sc0001231.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001231.1
OG0000182
Physical Location & Seq
Reverse (-)
90154 .. 90874
721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001231.1_g000023.1.cds

Sequence Viewer

Length: 636 bp
atgttaacgcagcccacggcagccattatgaggtgttctgaactctgggctaatctgcaaggaggccttggttcatcagtagtcggctatttcgcctccaaagactccaactttgatcctaccctagctcgcattgataagatcatagtctggacgcgccttcctaatctaccaaggcatcattggaatactgaatctctcaaattcttggttaggcatcttggtcaatttgtgatggcagatgacaataccatcaacggtatgaagaccatgttcgctaggattcttgttgagctatatctgcgctatcctcttaagtggactatcctagtaaataatgggaatgaacctccctctacagtgctagtgtcgtatgaggtgatattcgaagtgtgctttcggtgtggacaacatcgtaccagattacattcttatccgaacagggtggtgaatgacaacttcttcatggtggagcagttcgataaggagcatgctgtttaccctcctgaaatggcagataatgagtacattaaacctctcctagctgatgatatctctattattttccctcagcctctagcgaccaagttttttgcgacgaatttattttcctcagtaaatgtcactttttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

211

Amino Acids

24.34

Weight (kDa)

6.59

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 157
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 203, 601
AfaI GTAC 2 cut(s) 418, 527
AfiI CCNNNNNNNGG 1 cut(s) 30
AflII CTTAAG 1 cut(s) 314
AluBI AGCT 3 cut(s) 128, 295, 545
AluI AGCT 3 cut(s) 128, 295, 545
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 10, 20
ApoI RAATTY 2 cut(s) 203, 601
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspLEI GCGC 2 cut(s) 159, 306
AsuHPI GGTGA 2 cut(s) 391, 460
AsuII TTCGAA 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 22, 32
BccI CCATC 2 cut(s) 229, 260
BceAI ACGGC 1 cut(s) 33
BfaI CTAG 7 cut(s) 125, 279, 329, 365, 542, 578, 634
BfmI CTRYAG 1 cut(s) 357
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 2 cut(s) 11, 21
BlsI GCNGC 2 cut(s) 12, 22
BmsI GCATC 2 cut(s) 187, 226
BpiI GAAGAC 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 15, 67, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 15, 67, 173
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 584, 627
BseXI GCAGC 2 cut(s) 22, 32
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 387
Bsp143I GATC 2 cut(s) 115, 141
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 583, 626
BspFNI CGCG 1 cut(s) 157
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 15, 67, 173
BssMI GATC 2 cut(s) 115, 141
BssT1I CCWWGG 2 cut(s) 67, 173
Bst4CI ACNGT 2 cut(s) 260, 361
BstAFI CTTAAG 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 130, 492
BstDEI CTNAG 2 cut(s) 570, 613
BstDSI CCRYGG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 157
BstHHI GCGC 2 cut(s) 159, 306
BstKTI GATC 2 cut(s) 118, 144
BstMBI GATC 2 cut(s) 115, 141
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 494
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 22, 32
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 130, 492
CfoI GCGC 2 cut(s) 159, 306
CseI GACGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 417, 526
CviAII CATG 3 cut(s) 271, 466, 491
CviJI RGCY 9 cut(s) 13, 23, 50, 66, 87, 128, 295, 545, 574
CviKI_1 RGCY 9 cut(s) 13, 23, 50, 66, 87, 128, 295, 545, 574
CviQI GTAC 2 cut(s) 417, 526
DdeI CTNAG 2 cut(s) 570, 613
DpnI GATC 2 cut(s) 117, 143
DpnII GATC 2 cut(s) 115, 141
Eco130I CCWWGG 2 cut(s) 67, 173
Eco147I AGGCCT 1 cut(s) 66
Eco32I GATATC 1 cut(s) 553
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 67, 173
ErhI CCWWGG 2 cut(s) 67, 173
FaeI CATG 3 cut(s) 274, 469, 494
FaiI YATR 8 cut(s) 29, 146, 263, 272, 298, 375, 467, 492
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 3 cut(s) 270, 465, 490
Fnu4HI GCNGC 2 cut(s) 11, 21
Fsp4HI GCNGC 2 cut(s) 11, 21
FspBI CTAG 7 cut(s) 125, 279, 329, 365, 542, 578, 634
GlaI GCGC 2 cut(s) 158, 305
GluI GCNGC 2 cut(s) 11, 21
HaeIII GGCC 1 cut(s) 66
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 159, 306
Hin1II CATG 3 cut(s) 274, 469, 494
Hin6I GCGC 2 cut(s) 157, 304
HinP1I GCGC 2 cut(s) 157, 304
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 104, 194, 283
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 2 cut(s) 391, 460
Hpy166II GTNNAC 4 cut(s) 6, 321, 407, 499
Hpy188I TCNGA 2 cut(s) 40, 438
Hpy188III TCNNGA 2 cut(s) 151, 506
Hpy8I GTNNAC 4 cut(s) 6, 321, 407, 499
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 260, 361
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 2 cut(s) 570, 613
Hsp92II CATG 3 cut(s) 274, 469, 494
HspAI GCGC 2 cut(s) 157, 304
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 115, 141
LmnI GCTCC 2 cut(s) 472, 487
LpnPI CCDG 5 cut(s) 31, 136, 427, 433, 519
Lsp1109I GCAGC 2 cut(s) 22, 32
LweI GCATC 2 cut(s) 187, 226
MaeI CTAG 7 cut(s) 125, 279, 329, 365, 542, 578, 634
MaeIII GTNAC 1 cut(s) 622
MalI GATC 2 cut(s) 117, 143
MboI GATC 2 cut(s) 115, 141
MboII GAAGA 2 cut(s) 277, 454
MluCI AATT 3 cut(s) 203, 227, 601
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 132
MseI TTAA 3 cut(s) 5, 315, 531
MspCI CTTAAG 1 cut(s) 314
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 2 cut(s) 115, 141
NlaIII CATG 3 cut(s) 274, 469, 494
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 387
PaeI GCATGC 1 cut(s) 494
PceI AGGCCT 1 cut(s) 66
PfeI GAWTC 2 cut(s) 194, 283
PkrI GCNGC 2 cut(s) 12, 22
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
RsaI GTAC 2 cut(s) 418, 527
RsaNI GTAC 2 cut(s) 417, 526
SaqAI TTAA 3 cut(s) 5, 315, 531
SatI GCNGC 2 cut(s) 11, 21
Sau3AI GATC 2 cut(s) 115, 141
SchI GAGTC 1 cut(s) 98
SetI ASST 7 cut(s) 35, 130, 297, 352, 381, 538, 547
SfaNI GCATC 2 cut(s) 187, 226
SfcI CTRYAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 494
Sse9I AATT 3 cut(s) 203, 227, 601
SseBI AGGCCT 1 cut(s) 66
SspMI CTAG 7 cut(s) 125, 279, 329, 365, 542, 578, 634
StuI AGGCCT 1 cut(s) 66
StyI CCWWGG 2 cut(s) 67, 173
TaaI ACNGT 2 cut(s) 260, 361
TaqI TCGA 2 cut(s) 387, 480
TasI AATT 3 cut(s) 203, 227, 601
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 2 cut(s) 194, 283
Tru1I TTAA 3 cut(s) 5, 315, 531
Tru9I TTAA 3 cut(s) 5, 315, 531
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 10, 20
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 4 cut(s) 63, 278, 360, 454
TspRI CASTG 1 cut(s) 366
Vha464I CTTAAG 1 cut(s) 314
XapI RAATTY 2 cut(s) 203, 601
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 7 cut(s) 125, 279, 329, 365, 542, 578, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.