RLG00000020832

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000182
Physical Location & Seq
Forward (+)
69206241 .. 69208040
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020832

Sequence Viewer

Length: 933 bp
ATGCCACACGCGCTACGCGCTCACCTCAATCCTAGAGCTCTGCTAGGGTTTCTTCGCTTCAAGTACATAGCCGCCGGCGAAAACGGATGGTGGCCTCCCTGGCCTGACATTTACATCGCCACCGAGAAACATCTCCTCGAGCTCCTAATTCCAATTTTCCCTCTTCACAACGATTCTCATCATTACTCTTTCACTCTGCACAACGTTCCTCATGATGAATCTATTGTCCATCGCCTCACCTACAGTTACATTTTGTCTTTGCAGTTCCCAATTTCTGATTTCGCCTCCACCTTCCCAATTTCTGATCTCGCCTCCACCGGTGTGCCGCTTCGAGCTGCCGAACAGGAGTGGGTACATGTCCTTCTTGCCCAACTGCCGTCTGCTCAGTATCGTTACCTTCTCGCCATGGCTTTCAGCTCAAATGCTCGTGCCCAAGCTAATCCTCCACGAAGGCCCCCTGTTTTTAATCCTCTCCCTCGACCAAGCCCAAATGAACCTCCTTTTGTTACCAATATTGGTGGCACAATGGTGGTTGTCGAAAAAGAAGAGGGCGATCTGTTTTTTGATTTGGTTAGTAATCCTGCTAAAGTCTTTGTCTCTTATGAAACCATTTTTGAAGTATGCTTTGAATGCCGGAGTTATAAGCATAAGATCCAGGACTGCACTTTTAAAAGAAGGGATAAGCATTTTGTGATGGTTGATAAGGAGGAGGGGGATGATGATGTTGTCCCTGCTGACATGGATGTGGATTCAGAGGCCAGGCAATTAGCAACAGCGAAAGTTATGCTCTTTTTCCCTCAACCTGCCAAGAAGGCGAATACTAAGGAGGTTGACCCTAATGATCCCACTGTCAATCCCCCATCACCTGAATGGAAGTTGGTCCGTGGCAGGAACCTGCATTACTCTTTAGCTAAGGGATCAGATGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

311

Amino Acids

35.17

Weight (kDa)

6.11

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
Acc36I ACCTGC 2 cut(s) 811, 903
AccII CGCG 2 cut(s) 11, 18
AciI CCGC 2 cut(s) 72, 326
AclI AACGTT 1 cut(s) 204
AclWI GGATC 3 cut(s) 646, 836, 925
AfaI GTAC 2 cut(s) 65, 354
AflIII ACRYGT 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 317
AgsI TTSAA 3 cut(s) 61, 617, 629
AjnI CCWGG 3 cut(s) 98, 654, 758
AleI CACNNNNGTG 2 cut(s) 320, 527
AluBI AGCT 6 cut(s) 38, 142, 335, 417, 437, 911
AluI AGCT 6 cut(s) 38, 142, 335, 417, 437, 911
Alw21I GWGCWC 2 cut(s) 40, 144
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 646, 836, 925
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 4 cut(s) 92, 101, 452, 756
ApeKI GCWGC 1 cut(s) 335
AsiGI ACCGGT 1 cut(s) 317
AspLEI GCGC 2 cut(s) 13, 20
AspS9I GGNCC 2 cut(s) 453, 880
AsuHPI GGTGA 3 cut(s) 14, 229, 855
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 880
BaeGI GKGCMC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 40, 144
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
BauI CACGAG 1 cut(s) 426
Bbv12I GWGCWC 2 cut(s) 40, 144
BbvI GCAGC 1 cut(s) 322
BccI CCATC 5 cut(s) 81, 237, 688, 868, 917
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 3 cut(s) 100, 656, 760
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 2 cut(s) 33, 44
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 2 cut(s) 811, 903
BglI GCCNNNNNGGC 2 cut(s) 100, 812
BisI GCNGC 3 cut(s) 72, 326, 336
BlsI GCNGC 3 cut(s) 73, 327, 337
Bme1390I CCNGG 3 cut(s) 100, 656, 760
Bme18I GGWCC 1 cut(s) 880
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 453, 880
BmiI GGNNCC 2 cut(s) 455, 893
BmrFI CCNGG 3 cut(s) 100, 656, 760
Bpu10I CCTNAGC 1 cut(s) 912
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 98, 405, 883
BsaWI WCCGGW 1 cut(s) 317
Bse118I RCCGGY 2 cut(s) 74, 317
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 3 cut(s) 100, 656, 760
BseDI CCNNGG 3 cut(s) 98, 405, 883
BseGI GGATG 3 cut(s) 92, 721, 748
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 125, 722
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 2 cut(s) 182, 646
Bsh1236I CGCG 2 cut(s) 11, 18
BshFI GGCC 4 cut(s) 94, 103, 454, 758
BshTI ACCGGT 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 40, 144
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 75, 318, 634
BslFI GGGAC 1 cut(s) 713
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 4 cut(s) 94, 103, 454, 758
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 40, 144, 433
Bsp143I GATC 5 cut(s) 304, 553, 651, 841, 917
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 2 cut(s) 72, 326
BspANI GGCC 4 cut(s) 94, 103, 454, 758
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 2 cut(s) 11, 18
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 455, 893
BspMI ACCTGC 2 cut(s) 811, 903
BspPI GGATC 3 cut(s) 646, 836, 925
BsrFI RCCGGY 2 cut(s) 74, 317
BssAI RCCGGY 2 cut(s) 74, 317
BssECI CCNNGG 3 cut(s) 98, 405, 883
BssMI GATC 5 cut(s) 304, 553, 651, 841, 917
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 100, 656, 760
Bst4CI ACNGT 2 cut(s) 245, 850
Bst6I CTCTTC 2 cut(s) 168, 540
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 384, 822, 912, 930
BstDSI CCRYGG 2 cut(s) 405, 883
BstF5I GGATG 3 cut(s) 92, 721, 748
BstFNI CGCG 2 cut(s) 11, 18
BstHHI GCGC 2 cut(s) 13, 20
BstKTI GATC 5 cut(s) 307, 556, 654, 844, 920
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 5 cut(s) 304, 553, 651, 841, 917
BstMWI GCNNNNNNNGC 5 cut(s) 10, 17, 100, 630, 812
BstNI CCWGG 3 cut(s) 100, 656, 760
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 98, 654, 758
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 433
BstUI CGCG 2 cut(s) 11, 18
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BsuRI GGCC 4 cut(s) 94, 103, 454, 758
BtgI CCRYGG 2 cut(s) 405, 883
BtgZI GCGATG 2 cut(s) 100, 215
BtsCI GGATG 3 cut(s) 92, 721, 748
BtsIMutI CAGTG 1 cut(s) 846
BveI ACCTGC 2 cut(s) 811, 903
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 13, 20
Cfr10I RCCGGY 2 cut(s) 74, 317
Cfr13I GGNCC 2 cut(s) 453, 880
Csp6I GTAC 2 cut(s) 64, 353
CspAI ACCGGT 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 4 cut(s) 212, 356, 406, 739
CviQI GTAC 2 cut(s) 64, 353
DdeI CTNAG 4 cut(s) 384, 822, 912, 930
DpnI GATC 5 cut(s) 306, 555, 653, 843, 919
DpnII GATC 5 cut(s) 304, 553, 651, 841, 917
DraI TTTAAA 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 168, 540
EarI CTCTTC 2 cut(s) 168, 540
Ecl136II GAGCTC 2 cut(s) 38, 142
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 40, 144
Eco47I GGWCC 1 cut(s) 880
Eco53kI GAGCTC 2 cut(s) 38, 142
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 2 cut(s) 38, 142
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 3 cut(s) 98, 654, 758
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 2 cut(s) 40, 144
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 4 cut(s) 215, 359, 409, 742
FaqI GGGAC 1 cut(s) 713
FatI CATG 4 cut(s) 211, 355, 405, 738
Fnu4HI GCNGC 3 cut(s) 72, 326, 336
FokI GGATG 3 cut(s) 99, 728, 755
FriOI GRGCYC 2 cut(s) 40, 144
Fsp4HI GCNGC 3 cut(s) 72, 326, 336
FspBI CTAG 2 cut(s) 33, 44
GlaI GCGC 2 cut(s) 12, 19
GluI GCNGC 3 cut(s) 72, 326, 336
HaeIII GGCC 4 cut(s) 94, 103, 454, 758
HapII CCGG 3 cut(s) 75, 318, 634
HhaI GCGC 2 cut(s) 13, 20
Hin1II CATG 4 cut(s) 215, 359, 409, 742
Hin6I GCGC 2 cut(s) 11, 18
HinP1I GCGC 2 cut(s) 11, 18
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HinfI GANTC 3 cut(s) 173, 218, 749
HpaII CCGG 3 cut(s) 75, 318, 634
HphI GGTGA 3 cut(s) 14, 229, 855
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 4 cut(s) 277, 304, 754, 922
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 6 cut(s) 301, 371, 407, 444, 669, 805
HpyCH4III ACNGT 2 cut(s) 245, 850
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 199, 262, 663, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 17, 100, 630, 812
HpyF3I CTNAG 4 cut(s) 384, 822, 912, 930
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 4 cut(s) 215, 359, 409, 742
HspAI GCGC 2 cut(s) 11, 18
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 304, 553, 651, 841, 917
LmnI GCTCC 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 2 cut(s) 33, 44
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 245, 392, 505
MalI GATC 5 cut(s) 306, 555, 653, 843, 919
MboI GATC 5 cut(s) 304, 553, 651, 841, 917
MboII GAAGA 3 cut(s) 44, 155, 557
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 3 cut(s) 40, 144, 433
MluCI AATT 5 cut(s) 147, 153, 270, 297, 764
MreI CGCCGGCG 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 2 cut(s) 465, 669
MslI CAYNNNNRTG 4 cut(s) 320, 527, 743, 868
MspI CCGG 3 cut(s) 75, 318, 634
MspR9I CCNGG 3 cut(s) 100, 656, 760
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 3 cut(s) 100, 656, 760
MvnI CGCG 2 cut(s) 11, 18
MwoI GCNNNNNNNGC 5 cut(s) 10, 17, 100, 630, 812
NaeI GCCGGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 405
NdeII GATC 5 cut(s) 304, 553, 651, 841, 917
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 215, 359, 409, 742
NlaIV GGNNCC 2 cut(s) 455, 893
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 2 cut(s) 320, 527
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 355
PctI GAATGC 1 cut(s) 635
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 173, 218, 749
PfoI TCCNGGA 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 317
PkrI GCNGC 3 cut(s) 73, 327, 337
PscI ACATGT 1 cut(s) 355
PsiI TTATAA 1 cut(s) 642
Psp124BI GAGCTC 2 cut(s) 40, 144
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 98, 654, 758
PspGI CCWGG 3 cut(s) 98, 654, 758
PspN4I GGNNCC 2 cut(s) 455, 893
PspPI GGNCC 2 cut(s) 453, 880
PspXI VCTCGAGB 1 cut(s) 137
PsrI GAACNNNNNNTAC 2 cut(s) 884, 916
PsuI RGATCY 1 cut(s) 651
RsaI GTAC 2 cut(s) 65, 354
RsaNI GTAC 2 cut(s) 64, 353
RseI CAYNNNNRTG 4 cut(s) 320, 527, 743, 868
SacI GAGCTC 2 cut(s) 40, 144
SaqAI TTAA 2 cut(s) 465, 669
SatI GCNGC 3 cut(s) 72, 326, 336
Sau3AI GATC 5 cut(s) 304, 553, 651, 841, 917
Sau96I GGNCC 2 cut(s) 453, 880
ScrFI CCNGG 3 cut(s) 100, 656, 760
SduI GDGCHC 3 cut(s) 40, 144, 433
SfcI CTRYAG 1 cut(s) 241
SfiI GGCCNNNNNGGCC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 137
SgrAI CRCCGGYG 2 cut(s) 74, 317
SinI GGWCC 1 cut(s) 880
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 4 cut(s) 320, 527, 743, 868
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 5 cut(s) 147, 153, 270, 297, 764
SsiI CCGC 2 cut(s) 72, 326
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 33, 44
SstI GAGCTC 2 cut(s) 40, 144
StyD4I CCNGG 3 cut(s) 98, 654, 758
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 245, 850
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 138, 331, 478, 537
TasI AATT 5 cut(s) 147, 153, 270, 297, 764
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 74, 328
TfiI GAWTC 3 cut(s) 173, 218, 749
Tru1I TTAA 2 cut(s) 465, 669
Tru9I TTAA 2 cut(s) 465, 669
TscAI CASTG 1 cut(s) 853
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 3 cut(s) 231, 507, 618
TspGWI ACGGA 2 cut(s) 99, 872
TspRI CASTG 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 880
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 2 cut(s) 33, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.