RLG00000020268

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000182
Physical Location & Seq
Forward (+)
63070296 .. 63072990
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020268

Sequence Viewer

Length: 369 bp
ATGCCAGAGTCTCGAGGTTTTGATTTTCATTCTCGTCGCTCTCTTGGACGCCGTCGCCAGCGACCAGGAGAAGGTGTTCGTGGTCAGACGGTGCACTCATGGCTTGCATCTTCATATTCAAATTCCATACCCTCGTATGGTTCTAAAATGGCCTCTCCTTCATATGCAAGCACTTCCTGTGCTCCTGAATCCACTGCCACACAATGTCTGTTATATCGGAAAGGTCGTCGTTCCGGTCAAGGATCTCCTACAAAACGAGAAGAACGACAAGCACGTGACCTATCCGGTCATCACTGCCGAGGGGAGACCCAAAGGCAACAAGATGAGAACAACGACGGTAACAAAGCCGCAGATGATATGGAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.58

Weight (kDa)

9.65

Isoelectric Point (pI)

80.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 121
AcvI CACGTG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 71, 137
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
Alw21I GWGCWC 2 cut(s) 96, 184
Alw26I GTCTC 2 cut(s) 15, 299
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 2 cut(s) 150, 363
ApaLI GTGCAC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 96, 184
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 15, 299
BfaI CTAG 1 cut(s) 367
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 2 cut(s) 233, 284
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 137
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 71, 137
BseSI GKGCMC 1 cut(s) 96
BshFI GGCC 2 cut(s) 152, 365
BsiHKAI GWGCWC 2 cut(s) 96, 184
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 234, 285
BslI CCNNNNNNNGG 2 cut(s) 71, 137
BsmAI GTCTC 2 cut(s) 15, 299
BsnI GGCC 2 cut(s) 152, 365
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 96, 184
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 1 cut(s) 348
BspANI GGCC 2 cut(s) 152, 365
BspPI GGATC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 242
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 91, 338
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 59, 105, 169
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 2 cut(s) 15, 299
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 152, 365
BtsI GCAGTG 2 cut(s) 192, 292
BtsIMutI CAGTG 2 cut(s) 192, 292
Cac8I GCNNGC 3 cut(s) 59, 105, 169
CseI GACGC 1 cut(s) 57
CviAII CATG 1 cut(s) 99
CviJI RGCY 4 cut(s) 103, 152, 347, 365
CviKI_1 RGCY 4 cut(s) 103, 152, 347, 365
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 102
FaiI YATR 8 cut(s) 100, 115, 128, 138, 163, 165, 214, 359
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 367
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 2 cut(s) 152, 365
HapII CCGG 2 cut(s) 234, 285
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 1 cut(s) 102
HinfI GANTC 2 cut(s) 8, 188
HpaII CCGG 2 cut(s) 234, 285
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 87, 219
Hpy188III TCNNGA 2 cut(s) 12, 185
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 4 cut(s) 39, 57, 231, 338
HpyAV CCTTC 2 cut(s) 65, 168
HpyCH4III ACNGT 2 cut(s) 91, 338
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 94, 107, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 18, 51, 71, 78, 190, 198, 247, 298
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 367
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 275, 338
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 102, 272
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 96, 184
MluCI AATT 1 cut(s) 121
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 5 cut(s) 8, 142, 163, 293, 355
MroXI GAANNNNTTC 1 cut(s) 75
MspI CCGG 2 cut(s) 234, 285
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 242
NlaIII CATG 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 12
PceI AGGCCT 1 cut(s) 365
PcsI WCGNNNNNNNCGW 3 cut(s) 223, 262, 271
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 64
PspCI CACGTG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 242
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 96, 184
SetI ASST 5 cut(s) 19, 76, 226, 277, 282
SfaNI GCATC 1 cut(s) 116
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 121
SseBI AGGCCT 1 cut(s) 365
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 367
StuI AGGCCT 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 91, 338
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 121
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 2 cut(s) 199, 299
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 17, 102, 150
TspRI CASTG 2 cut(s) 199, 299
Tth111I GACNNNGTC 1 cut(s) 51
VneI GTGCAC 1 cut(s) 92
XapI RAATTY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.