MD11G1236100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000182
Physical Location & Seq
Forward (+)
34337726 .. 34340534
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1236100.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGTTGGATTCCCCCAAAAGTTTGGCTATTTATACAGGTTTTGGTGGTACATTTGGCCCTCACCTGCTTCCCTGCCTTCTAATTTCTTCTCATCATCTGTCTTCAAGATGTCTAACTCTCACATGGCTGCCTCTAATTCAAGCTTGGCCTGTAGGCCTAGGATTTGTTCTAATTCCTATGTGCCTAGCTGGGAGAACCCCTTCCCGGTTCCTCAACCTGGGCAGGAACCTGTGGTGGTTGAAAGGGCTAGGAGTACTTTCACCATGGATAGAGGTGTGACTAGGGTGAATACTAACCTGTGCTCATCGATTAATGTTGAGCACATGCAATCTAGAGTATTGATGGGGAAGATGTATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

9.66

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AfaI GTAC 2 cut(s) 50, 256
AfiI CCNNNNNNNGG 2 cut(s) 205, 218
AgsI TTSAA 3 cut(s) 106, 141, 242
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 144, 189
AluI AGCT 2 cut(s) 144, 189
Alw21I GWGCWC 2 cut(s) 305, 324
AoxI GGCC 3 cut(s) 56, 147, 155
ApeKI GCWGC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 200
AspA2I CCTAGG 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 54, 253, 298
AvrII CCTAGG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 305, 324
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 219
BcnI CCSGG 1 cut(s) 206
BfaI CTAG 5 cut(s) 159, 186, 249, 282, 333
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 1 cut(s) 129
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 206, 219
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 210, 228
BmrFI CCNGG 2 cut(s) 206, 219
BpiI GAAGAC 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 206
Bsa29I ATCGAT 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 158, 218, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 218
BseBI CCWGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 158, 218, 264
BseLI CCNNNNNNNGG 2 cut(s) 205, 218
BseXI GCAGC 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 189
BshFI GGCC 3 cut(s) 58, 149, 157
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 305, 324
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 205, 218
BsnI GGCC 3 cut(s) 58, 149, 157
Bsp1286I GDGCHC 2 cut(s) 305, 324
Bsp19I CCATGG 1 cut(s) 264
BspANI GGCC 3 cut(s) 58, 149, 157
BspDI ATCGAT 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 210, 228
BspMI ACCTGC 1 cut(s) 73
BssECI CCNNGG 3 cut(s) 158, 218, 264
BssT1I CCWWGG 2 cut(s) 158, 264
Bst2UI CCWGG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 264
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 204, 217
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 23
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 3 cut(s) 58, 149, 157
BsuTUI ATCGAT 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 49, 255
CviAII CATG 3 cut(s) 124, 265, 325
CviJI RGCY 8 cut(s) 27, 58, 128, 144, 149, 157, 189, 248
CviKI_1 RGCY 8 cut(s) 27, 58, 128, 144, 149, 157, 189, 248
CviQI GTAC 2 cut(s) 49, 255
Eco130I CCWWGG 2 cut(s) 158, 264
Eco147I AGGCCT 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 158, 264
ErhI CCWWGG 2 cut(s) 158, 264
FaeI CATG 3 cut(s) 127, 268, 328
FaiI YATR 6 cut(s) 34, 125, 180, 266, 326, 357
FatI CATG 3 cut(s) 123, 264, 324
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 5 cut(s) 159, 186, 249, 282, 333
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 3 cut(s) 58, 149, 157
HapII CCGG 1 cut(s) 206
Hin1II CATG 3 cut(s) 127, 268, 328
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 9
HpaII CCGG 1 cut(s) 206
HphI GGTGA 3 cut(s) 54, 253, 298
Hpy188III TCNNGA 2 cut(s) 106, 333
HpyAV CCTTC 2 cut(s) 87, 211
HpyCH4V TGCA 1 cut(s) 328
Hsp92II CATG 3 cut(s) 127, 268, 328
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 5 cut(s) 159, 186, 249, 282, 333
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 3 cut(s) 79, 94, 361
MhlI GDGCHC 2 cut(s) 305, 324
MluCI AATT 3 cut(s) 82, 136, 172
MnlI CCTC 4 cut(s) 70, 142, 222, 266
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 206, 219
MvaI CCWGG 1 cut(s) 219
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 264
NlaIII CATG 3 cut(s) 127, 268, 328
NlaIV GGNNCC 2 cut(s) 210, 228
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 73
PceI AGGCCT 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 210, 228
PspPI GGNCC 1 cut(s) 57
RsaI GTAC 2 cut(s) 50, 256
RsaNI GTAC 2 cut(s) 49, 255
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 206, 219
SduI GDGCHC 2 cut(s) 305, 324
SetI ASST 8 cut(s) 41, 67, 146, 191, 220, 232, 277, 300
SfcI CTRYAG 1 cut(s) 151
Sse9I AATT 3 cut(s) 82, 136, 172
SseBI AGGCCT 1 cut(s) 157
SspMI CTAG 5 cut(s) 159, 186, 249, 282, 333
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 204, 217
StyI CCWWGG 2 cut(s) 158, 264
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 82, 136, 172
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 312
XbaI TCTAGA 1 cut(s) 332
XceI RCATGY 1 cut(s) 328
XmaJI CCTAGG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 5 cut(s) 159, 186, 249, 282, 333
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.