Rmu_sc0000103.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
OG0000182
Physical Location & Seq
Reverse (-)
7050 .. 7628
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000103.1_g000003.1.cds

Sequence Viewer

Length: 579 bp
atgcagtttgataactttagtgatgctagggcttctggtttcgttggggatgatatgaatgagtttgaggttatgatgatgaatggcaagagagatctgattttttctccaaagaattctggtatgagttcgggatcaaagaagaggaccagggagatggctgatgatcagagtatggctgaagcagcaggaaatgcttgggaggacagcgcctcatcttacaaagtttcagccatgaaaattttatgctggaatagtaggggcagtgcttggtctggttttgtagcacaatccctttattatgtgtctacttttgatgttgatgtgctctgtatcttagatactagagctaatgcttctatcctaaataaaactaagtgtttaccttatgacagttcttatgttagtagtggtaatggtcaatgtggtggtattttacttctttggaaatctaggatggataaaatcactgtgattactcctcatgatcgttctatgtattgcattatatttgatattccatcaaataataattggtttactacttttgtttacgcctaccctcagaaggaaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

5.83

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 308
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 115, 240
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 568
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 115, 240
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 147
AvaII GGWCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 197
BccI CCATC 3 cut(s) 151, 451, 529
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 166
BfaI CTAG 3 cut(s) 27, 345, 453
BfoI RGCGCY 1 cut(s) 213
BglII AGATCT 1 cut(s) 94
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 568
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 55, 462
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 578
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 94, 134, 166, 487
BspCNI CTCAG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 484
BspPI GGATC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 4 cut(s) 94, 134, 166, 487
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 395, 472
Bst6I CTCTTC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 337, 375, 564
BstF5I GGATG 2 cut(s) 55, 462
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 4 cut(s) 97, 137, 169, 490
BstMBI GATC 4 cut(s) 94, 134, 166, 487
BstMWI GCNNNNNNNGC 2 cut(s) 185, 194
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 1 cut(s) 94
BtsCI GGATG 2 cut(s) 55, 462
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 468
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 2 cut(s) 235, 485
CviJI RGCY 5 cut(s) 32, 161, 179, 233, 350
CviKI_1 RGCY 5 cut(s) 32, 161, 179, 233, 350
DdeI CTNAG 3 cut(s) 337, 375, 564
DpnI GATC 4 cut(s) 96, 136, 168, 489
DpnII GATC 4 cut(s) 94, 134, 166, 487
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 238, 488
FatI CATG 2 cut(s) 234, 484
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 62, 469
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 3 cut(s) 27, 345, 453
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 213
HhaI GCGC 1 cut(s) 212
Hin1II CATG 2 cut(s) 238, 488
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
Hpy166II GTNNAC 4 cut(s) 309, 383, 540, 553
Hpy188I TCNGA 3 cut(s) 99, 171, 567
Hpy188III TCNNGA 2 cut(s) 132, 485
Hpy8I GTNNAC 4 cut(s) 309, 383, 540, 553
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 395, 472
HpyCH4V TGCA 2 cut(s) 4, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 194
HpyF3I CTNAG 3 cut(s) 337, 375, 564
Hsp92II CATG 2 cut(s) 238, 488
HspAI GCGC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 4 cut(s) 94, 134, 166, 487
LpnPI CCDG 7 cut(s) 21, 105, 136, 163, 174, 235, 261
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 27, 345, 453
MalI GATC 4 cut(s) 96, 136, 168, 489
MboI GATC 4 cut(s) 94, 134, 166, 487
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 115, 240, 532
MnlI CCTC 6 cut(s) 61, 138, 196, 223, 492, 573
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 185, 194
NdeII GATC 4 cut(s) 94, 134, 166, 487
NlaIII CATG 2 cut(s) 238, 488
PagI TCATGA 1 cut(s) 484
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 94
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 94, 134, 166, 487
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 330
SetI ASST 3 cut(s) 72, 352, 388
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 147
Sse9I AATT 3 cut(s) 115, 240, 532
SspMI CTAG 3 cut(s) 27, 345, 453
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 395, 472
TasI AATT 3 cut(s) 115, 240, 532
TscAI CASTG 2 cut(s) 271, 475
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 71, 95, 251
TspRI CASTG 2 cut(s) 271, 475
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 115, 240
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 3 cut(s) 27, 345, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.