Rh2DG394800

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000182
Physical Location & Seq
Forward (+)
57418596 .. 57430327
11732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG394800.1

Sequence Viewer

Length: 1479 bp
ATGAACCCTGGAAGTTTGATAGCTTCGGCGGCCATAAACATAGGCTTGGCCATCGTGATTCTCTCACTCTTCTCCATCCTCAAGAAGCAACCCTCGTACGTCCCTATCTACTACCCTCGATGCCTTTCTCAATCGCAGTCGTCGCAGCGCCACTGCCACAACATTTCGATGAATCCCTTATTCTTCGCTGCTTCCTCCCTTCCCACTCCTGGATTTGTAGCGATTACGGCGTCTCCGAGGATGAGATCCTCAAGACCAGTGGCCTCGATGCCCTCATCATCATCAGGTGGGCAAAGATGGAGAGAAGAAGGCGAATTTGGCTGTGAAGGGCATGGTAGAGGTGCAATTGAACAAGTTGAACATAGTAGAAGCTCAATAATTAAAGTGGAATCGGATTGCAGCATGAATTGTGATATGACCTCTATTAGTCCTTCTCCTCATGAAATTGGTAAGCCTACAGAATGCAAGAACAAAAGTTCAAAAACTAGTGGGAAGGTTGCTCAAAGGCGTTGCTCATCTTTAAGGGTTTCAAGGGTTAATCTTGAAGCTGCCAACAAGTTCATTCCAAACAATCCCTTCTTCAAAGTCTCTCTTGGGGCTTGTCATATGGAGAAGTCAAATGTGAGTGTACCAACTAGTTTTATCAGGCAGTTCATAAAGCGACTGGAGAAACAAACAGTGATGCTTCAGGTTAAAAATAGATTGTGGCCTGTGAATTTGATTCCTTATGCTTATAGTAATCAACGACTATCAACCAAACTTTGTGGCGGTTGGATTGCATTTGCCAGGGAACATGATTTGAAAGGAGGTGATGTTTGTGTATTTGAGCTTATGGAGATGAAAGCCAATATTGAGGCTAAAGCAACTAGGACTTACCAAAGGAAAGGAAAAGTAGTTGTAAGATTGGGAAGTAAGGCTACTCTTGGGAATGAGGCTTTTGTGAAACCGGGAATTAGCTTTAAGGATGCAGCAAAAGGACAGGGTATTATCCTTATCTCTGATGATGACCAGGACCAGCACCTTGGTTCAAAGAAGGGATCCTCCTCTAGTGAGGAGGAAGTGGTGAGCAATTTTAGCTTCAAAAGTTCTGTTTTATCTTACTCTTCTTTTCCTGAGATTGCTAGGCTTTACCATGATGTGCATGATCAAATTATTAGGGTTGATGATATCTATTCCCCGACTAGTGCGTTGGACTATTTTTATGCTAATCATGCCTCCCCAACTATGCAGTTTGAAAATTATAGCGATACTAGGGCCTCGAGTTTTGTTGGGGATAATCAGGACCAGGATATGAATGATTATGAGATAAAGATGATAAATGGAAGGAGGGCTTTGATGGCTGTTCAGGAGGTCTCCGAGAGGAGCTTGGGCTCTAAGAAGAGGATCAGGGAAATGGCTCAAAATGACAACATGTCTGTAGCTGCTGCAGGAATTGCTGAGGAGCACAGCGCCTCATCTCACAAGGCACCAAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

492

Amino Acids

54.32

Weight (kDa)

9.18

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 193 - 282 6.7e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1465
AciI CCGC 2 cut(s) 29, 768
AclWI GGATC 4 cut(s) 240, 1032, 1045, 1391
AcoI YGGCCR 2 cut(s) 30, 48
AcsI RAATTY 2 cut(s) 314, 715
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 98, 630
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 1410
AhdI GACNNNNNGTC 1 cut(s) 1411
AhlI ACTAGT 3 cut(s) 485, 635, 1181
AjnI CCWGG 5 cut(s) 7, 208, 785, 1008, 1284
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 8 cut(s) 23, 372, 548, 829, 957, 1077, 1365, 1421
AluI AGCT 8 cut(s) 23, 372, 548, 829, 957, 1077, 1365, 1421
Alw21I GWGCWC 1 cut(s) 1446
Alw26I GTCTC 3 cut(s) 237, 592, 1357
AlwI GGATC 4 cut(s) 240, 1032, 1045, 1391
Ama87I CYCGRG 1 cut(s) 1258
AoxI GGCC 5 cut(s) 30, 48, 261, 707, 1254
ApeKI GCWGC 7 cut(s) 145, 188, 399, 548, 968, 1421, 1424
ApoI RAATTY 2 cut(s) 314, 715
AspLEI GCGC 2 cut(s) 150, 1451
AspS9I GGNCC 3 cut(s) 1012, 1254, 1282
AsuC2I CCSGG 1 cut(s) 948
AsuHPI GGTGA 2 cut(s) 821, 1075
AvaI CYCGRG 1 cut(s) 1258
AvaII GGWCC 2 cut(s) 1012, 1282
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 1465
BanII GRGCYC 1 cut(s) 1373
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
Bbv12I GWGCWC 1 cut(s) 1446
BbvCI CCTCAGC 1 cut(s) 1437
BbvI GCAGC 7 cut(s) 157, 175, 411, 535, 980, 1408, 1411
BccI CCATC 4 cut(s) 59, 83, 291, 1330
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 5 cut(s) 9, 210, 787, 1010, 1286
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 1 cut(s) 948
BcoDI GTCTC 3 cut(s) 237, 592, 1357
BcuI ACTAGT 3 cut(s) 485, 635, 1181
BfaI CTAG 7 cut(s) 486, 636, 867, 1047, 1122, 1182, 1251
BfmI CTRYAG 3 cut(s) 456, 1416, 1425
BfoI RGCGCY 2 cut(s) 151, 1452
BisI GCNGC 8 cut(s) 30, 146, 189, 400, 549, 969, 1422, 1425
BlsI GCNGC 8 cut(s) 31, 147, 190, 401, 550, 970, 1423, 1426
Bme1390I CCNGG 6 cut(s) 9, 210, 787, 948, 1010, 1286
Bme18I GGWCC 2 cut(s) 1012, 1282
BmeRI GACNNNNNGTC 1 cut(s) 1411
BmeT110I CYCGRG 1 cut(s) 1258
BmgT120I GGNCC 3 cut(s) 1012, 1254, 1282
BmiI GGNNCC 2 cut(s) 1039, 1467
BmrFI CCNGG 6 cut(s) 9, 210, 787, 948, 1010, 1286
BmsI GCATC 4 cut(s) 110, 258, 672, 955
BpmI CTGGAG 1 cut(s) 686
Bpu10I CCTNAGC 1 cut(s) 1437
BpuEI CTTGAG 2 cut(s) 65, 235
BpuMI CCSGG 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 1357
BsaJI CCNNGG 4 cut(s) 7, 236, 786, 1021
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 798, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 257, 669
BseBI CCWGG 5 cut(s) 9, 210, 787, 1010, 1286
BseDI CCNNGG 4 cut(s) 7, 236, 786, 1021
BseGI GGATG 3 cut(s) 75, 246, 970
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 1104, 1428
BseNI ACTGG 2 cut(s) 257, 669
BseRI GAGGAG 5 cut(s) 426, 1033, 1067, 1375, 1454
BseXI GCAGC 7 cut(s) 157, 175, 411, 535, 980, 1408, 1411
BshFI GGCC 5 cut(s) 32, 50, 263, 709, 1256
BshNI GGYRCC 1 cut(s) 1465
BsiHKAI GWGCWC 1 cut(s) 1446
BsiHKCI CYCGRG 1 cut(s) 1258
BsiSI CCGG 1 cut(s) 947
BsiWI CGTACG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 3 cut(s) 237, 592, 1357
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 5 cut(s) 32, 50, 263, 709, 1256
Bso31I GGTCTC 1 cut(s) 1357
BsoBI CYCGRG 1 cut(s) 1258
Bsp1286I GDGCHC 2 cut(s) 1373, 1446
Bsp143I GATC 4 cut(s) 245, 1037, 1144, 1383
BspACI CCGC 2 cut(s) 29, 768
BspANI GGCC 5 cut(s) 32, 50, 263, 709, 1256
BspCNI CTCAG 2 cut(s) 1105, 1429
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 1039, 1467
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 4 cut(s) 240, 1032, 1045, 1391
BspT107I GGYRCC 1 cut(s) 1465
BspTNI GGTCTC 1 cut(s) 1357
BsrI ACTGG 2 cut(s) 257, 669
BssECI CCNNGG 4 cut(s) 7, 236, 786, 1021
BssMI GATC 4 cut(s) 245, 1037, 1144, 1383
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 1021
Bst2UI CCWGG 5 cut(s) 9, 210, 787, 1010, 1286
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 3 cut(s) 74, 1108, 1373
BstACI GRCGYC 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 1433
BstDEI CTNAG 3 cut(s) 1113, 1374, 1437
BstF5I GGATG 3 cut(s) 75, 246, 970
BstH2I RGCGCY 2 cut(s) 151, 1452
BstHHI GCGC 2 cut(s) 150, 1451
BstKTI GATC 4 cut(s) 248, 1040, 1147, 1386
BstMAI GTCTC 3 cut(s) 237, 592, 1357
BstMBI GATC 4 cut(s) 245, 1037, 1144, 1383
BstMWI GCNNNNNNNGC 8 cut(s) 29, 142, 227, 318, 1074, 1211, 1337, 1433
BstNI CCWGG 5 cut(s) 9, 210, 787, 1010, 1286
BstNSI RCATGY 1 cut(s) 1414
BstSCI CCNGG 6 cut(s) 7, 208, 785, 946, 1008, 1284
BstSFI CTRYAG 3 cut(s) 456, 1416, 1425
BstV1I GCAGC 7 cut(s) 157, 175, 411, 535, 980, 1408, 1411
BstX2I RGATCY 2 cut(s) 245, 1037
BstXI CCANNNNNNTGG 1 cut(s) 1022
BstYI RGATCY 2 cut(s) 245, 1037
BsuRI GGCC 5 cut(s) 32, 50, 263, 709, 1256
BtsCI GGATG 3 cut(s) 75, 246, 970
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 3 cut(s) 151, 264, 684
CciI TCATGA 1 cut(s) 439
CfoI GCGC 2 cut(s) 150, 1451
Cfr13I GGNCC 3 cut(s) 1012, 1254, 1282
CseI GACGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 97, 629
CspCI CAANNNNNGTGG 4 cut(s) 240, 275, 745, 780
CviAII CATG 9 cut(s) 332, 403, 440, 794, 1133, 1142, 1211, 1411, 1476
CviQI GTAC 2 cut(s) 97, 629
DdeI CTNAG 3 cut(s) 1113, 1374, 1437
DpnI GATC 4 cut(s) 247, 1039, 1146, 1385
DpnII GATC 4 cut(s) 245, 1037, 1144, 1383
DriI GACNNNNNGTC 1 cut(s) 1411
EaeI YGGCCR 2 cut(s) 30, 48
Eam1104I CTCTTC 3 cut(s) 74, 1108, 1373
Eam1105I GACNNNNNGTC 1 cut(s) 1411
EarI CTCTTC 3 cut(s) 74, 1108, 1373
Eco130I CCWWGG 1 cut(s) 1021
Eco24I GRGCYC 1 cut(s) 1373
Eco31I GGTCTC 1 cut(s) 1357
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 2 cut(s) 1012, 1282
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 1258
EcoO109I RGGNCCY 1 cut(s) 1254
EcoRII CCWGG 5 cut(s) 7, 208, 785, 1008, 1284
EcoRV GATATC 1 cut(s) 1168
EcoT14I CCWWGG 1 cut(s) 1021
EcoT38I GRGCYC 1 cut(s) 1373
ErhI CCWWGG 1 cut(s) 1021
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 9 cut(s) 335, 406, 443, 797, 1136, 1145, 1214, 1414, 1479
FalI AAGNNNNNCTT 4 cut(s) 576, 608, 1315, 1347
FaqI GGGAC 1 cut(s) 86
FatI CATG 9 cut(s) 331, 402, 439, 793, 1132, 1141, 1210, 1410, 1475
FauNDI CATATG 1 cut(s) 606
FbaI TGATCA 1 cut(s) 1144
Fnu4HI GCNGC 8 cut(s) 30, 146, 189, 400, 549, 969, 1422, 1425
FokI GGATG 3 cut(s) 62, 253, 977
FriOI GRGCYC 1 cut(s) 1373
Fsp4HI GCNGC 8 cut(s) 30, 146, 189, 400, 549, 969, 1422, 1425
FspBI CTAG 7 cut(s) 486, 636, 867, 1047, 1122, 1182, 1251
GlaI GCGC 2 cut(s) 149, 1450
GluI GCNGC 8 cut(s) 30, 146, 189, 400, 549, 969, 1422, 1425
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 2 cut(s) 151, 1452
HaeIII GGCC 5 cut(s) 32, 50, 263, 709, 1256
HapII CCGG 1 cut(s) 947
HgaI GACGC 1 cut(s) 219
HhaI GCGC 2 cut(s) 150, 1451
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 9 cut(s) 335, 406, 443, 797, 1136, 1145, 1214, 1414, 1479
Hin6I GCGC 2 cut(s) 148, 1449
HinP1I GCGC 2 cut(s) 148, 1449
HinfI GANTC 4 cut(s) 58, 172, 389, 721
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 821, 1075
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 4 cut(s) 237, 394, 1000, 1357
Hpy188III TCNNGA 8 cut(s) 55, 82, 252, 440, 542, 1112, 1280, 1346
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 8 cut(s) 209, 302, 320, 441, 487, 586, 1027, 1317
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 8 cut(s) 344, 399, 465, 779, 968, 1141, 1228, 1427
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 142, 227, 318, 1074, 1211, 1337, 1433
HpyF3I CTNAG 3 cut(s) 1113, 1374, 1437
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 9 cut(s) 335, 406, 443, 797, 1136, 1145, 1214, 1414, 1479
HspAI GCGC 2 cut(s) 148, 1449
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 245, 1037, 1144, 1383
LmnI GCTCC 2 cut(s) 1362, 1441
Lsp1109I GCAGC 7 cut(s) 157, 175, 411, 535, 980, 1408, 1411
LweI GCATC 4 cut(s) 110, 258, 672, 955
MaeI CTAG 7 cut(s) 486, 636, 867, 1047, 1122, 1182, 1251
MaeII ACGT 1 cut(s) 99
MalI GATC 4 cut(s) 247, 1039, 1146, 1385
MboI GATC 4 cut(s) 245, 1037, 1144, 1383
MboII GAAGA 6 cut(s) 61, 175, 317, 571, 1095, 1390
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 245, 1037
MhlI GDGCHC 2 cut(s) 1373, 1446
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 752, 1170
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 381, 521, 537, 693, 960
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 6 cut(s) 9, 210, 787, 948, 1010, 1286
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 5 cut(s) 9, 210, 787, 1010, 1286
MwoI GCNNNNNNNGC 8 cut(s) 29, 142, 227, 318, 1074, 1211, 1337, 1433
NciI CCSGG 1 cut(s) 948
NdeI CATATG 1 cut(s) 606
NdeII GATC 4 cut(s) 245, 1037, 1144, 1383
NlaIII CATG 9 cut(s) 335, 406, 443, 797, 1136, 1145, 1214, 1414, 1479
NlaIV GGNNCC 2 cut(s) 1039, 1467
NspI RCATGY 1 cut(s) 1414
PaeR7I CTCGAG 1 cut(s) 1258
PagI TCATGA 1 cut(s) 439
PciI ACATGT 1 cut(s) 1410
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 4 cut(s) 58, 172, 389, 721
Pfl23II CGTACG 1 cut(s) 96
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 8 cut(s) 31, 147, 190, 401, 550, 970, 1423, 1426
PscI ACATGT 1 cut(s) 1410
Psp6I CCWGG 5 cut(s) 7, 208, 785, 1008, 1284
PspGI CCWGG 5 cut(s) 7, 208, 785, 1008, 1284
PspLI CGTACG 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 1039, 1467
PspPI GGNCC 3 cut(s) 1012, 1254, 1282
PspXI VCTCGAGB 1 cut(s) 1258
PstI CTGCAG 1 cut(s) 1429
PsuI RGATCY 2 cut(s) 245, 1037
RsaI GTAC 2 cut(s) 98, 630
RsaNI GTAC 2 cut(s) 97, 629
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 5 cut(s) 381, 521, 537, 693, 960
SatI GCNGC 8 cut(s) 30, 146, 189, 400, 549, 969, 1422, 1425
Sau3AI GATC 4 cut(s) 245, 1037, 1144, 1383
Sau96I GGNCC 3 cut(s) 1012, 1254, 1282
ScrFI CCNGG 6 cut(s) 9, 210, 787, 948, 1010, 1286
SduI GDGCHC 2 cut(s) 1373, 1446
SfaNI GCATC 4 cut(s) 110, 258, 672, 955
SfcI CTRYAG 3 cut(s) 456, 1416, 1425
Sfr274I CTCGAG 1 cut(s) 1258
SinI GGWCC 2 cut(s) 1012, 1282
SlaI CTCGAG 1 cut(s) 1258
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 80, 250, 1258
SmoI CTYRAG 3 cut(s) 80, 250, 1258
SpeI ACTAGT 3 cut(s) 485, 635, 1181
SsiI CCGC 2 cut(s) 29, 768
SspI AATATT 1 cut(s) 850
SspMI CTAG 7 cut(s) 486, 636, 867, 1047, 1122, 1182, 1251
StyD4I CCNGG 6 cut(s) 7, 208, 785, 946, 1008, 1284
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 118, 167, 266, 1259
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 4 cut(s) 58, 172, 389, 721
Tru1I TTAA 5 cut(s) 381, 521, 537, 693, 960
Tru9I TTAA 5 cut(s) 381, 521, 537, 693, 960
TscAI CASTG 3 cut(s) 158, 264, 684
TseI GCWGC 7 cut(s) 145, 188, 399, 548, 968, 1421, 1424
TspDTI ATGAA 8 cut(s) 17, 185, 419, 456, 550, 643, 854, 1307
TspRI CASTG 3 cut(s) 158, 264, 684
VpaK11BI GGWCC 2 cut(s) 1012, 1282
XapI RAATTY 2 cut(s) 314, 715
XceI RCATGY 1 cut(s) 1414
XhoI CTCGAG 1 cut(s) 1258
XspI CTAG 7 cut(s) 486, 636, 867, 1047, 1122, 1182, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.