Rh3BG202300

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000182
Physical Location & Seq
Reverse (-)
18026049 .. 18033759
7711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG202300.1

Sequence Viewer

Length: 726 bp
ATGTTCGCAAGAATTCTCATTGAACTCGACCTGCGCTACCCTCTTAAGCGTACGGTCCAAGTCAATAATGGGAATGAACCCCCTTCTATTGTTCTTGTCTCCTATGAGGTGATCTTTCAAGTGTGCTTCAGGTGTGGCCAGCACCGTACTAGGCTTCACTCTTGCTCGCTCAGGGCTGTCAATGACAACTTTTTCATGGTGGAGCGTATTGGACAAGAACATGATGTTTATCCTCCCGAGATGGCTGATTATGATTTTATTAAGCCATTCCTTTCTGATGATGTCTCTATCATCTTCCCACAACCTTTAGTGGCTAATCAATTCCCCCTATCCTCTGATCTCCCTTCTGAAAACCATGATGGAGGATCTTGGAAGATTGTGTCCAGGAAGGGAAAAGCAAAGGATGCTTGCTTTTCCAAGTTTGGATCTCTCCCCAACAGCTCAACAAAATACAACCTCAAAAACAACTCTCTTGTTACCCCTGGTTGGTCTTTTAAGGAGGCTGCTGTCGGGAGTGAGGCTAGCCCTGCAGGCCCGTCAAAGAAGAAGGAGGTTATTGTGCTCTCTGATTCATCTCAGGAGGTGGATCAGTATTTAGATGCTGAGGAAGCGCCAAAAATTGGAGATATGGATGCGCTGCTAGCTATAGCAAATAGAGATGAGATGCCCAATTGTGAATTGCCCATTCATGTTATACTTCCCCGTCCTATAGTCTCAGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

241

Amino Acids

26.8

Weight (kDa)

5.42

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 620
AclWI GGATC 3 cut(s) 373, 433, 594
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 2 cut(s) 52, 148
AfiI CCNNNNNNNGG 2 cut(s) 486, 620
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 23, 119
AjnI CCWGG 2 cut(s) 383, 481
AluBI AGCT 2 cut(s) 441, 644
AluI AGCT 2 cut(s) 441, 644
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 3 cut(s) 103, 289, 718
AlwI GGATC 3 cut(s) 373, 433, 594
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 136, 532
ApeKI GCWGC 2 cut(s) 503, 637
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 3 cut(s) 36, 613, 637
AspS9I GGNCC 2 cut(s) 55, 533
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 2 cut(s) 521, 640
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 55
BalI TGGCCA 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 490, 624
BccI CCATC 2 cut(s) 235, 353
BciT130I CCWGG 2 cut(s) 385, 483
BcoDI GTCTC 3 cut(s) 103, 289, 718
BfaI CTAG 3 cut(s) 150, 522, 641
BfmI CTRYAG 3 cut(s) 528, 645, 708
BfoI RGCGCY 1 cut(s) 614
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 531
BisI GCNGC 2 cut(s) 504, 638
BlsI GCNGC 2 cut(s) 505, 639
Bme1390I CCNGG 2 cut(s) 385, 483
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 55, 533
BmrFI CCNGG 2 cut(s) 385, 483
BmsI GCATC 4 cut(s) 394, 589, 622, 654
BmtI GCTAGC 2 cut(s) 525, 644
Bpu10I CCTNAGC 2 cut(s) 170, 603
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 620
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 385, 483
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 409, 637
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 486, 620
BseMII CTCAG 3 cut(s) 184, 590, 594
BseXI GCAGC 2 cut(s) 490, 624
BshFI GGCC 2 cut(s) 138, 534
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 236
BsiWI CGTACG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 486, 620
BsmAI GTCTC 3 cut(s) 103, 289, 718
BsnI GGCC 2 cut(s) 138, 534
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 5 cut(s) 111, 337, 365, 425, 586
BspANI GGCC 2 cut(s) 138, 534
BspCNI CTCAG 3 cut(s) 183, 589, 595
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 39
BspOI GCTAGC 2 cut(s) 525, 644
BspPI GGATC 3 cut(s) 373, 433, 594
BspTI CTTAAG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 5 cut(s) 111, 337, 365, 425, 586
Bst2UI CCWGG 2 cut(s) 385, 483
Bst4CI ACNGT 2 cut(s) 55, 146
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 6 cut(s) 140, 167, 409, 523, 532, 642
BstDEI CTNAG 4 cut(s) 170, 576, 603, 715
BstF5I GGATG 2 cut(s) 409, 637
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 3 cut(s) 36, 613, 637
BstKTI GATC 5 cut(s) 114, 340, 368, 428, 589
BstMAI GTCTC 3 cut(s) 103, 289, 718
BstMBI GATC 5 cut(s) 111, 337, 365, 425, 586
BstMWI GCNNNNNNNGC 5 cut(s) 404, 527, 531, 608, 641
BstNI CCWGG 2 cut(s) 385, 483
BstSCI CCNGG 2 cut(s) 383, 481
BstSFI CTRYAG 3 cut(s) 528, 645, 708
BstV1I GCAGC 2 cut(s) 490, 624
BstX2I RGATCY 2 cut(s) 365, 425
BstYI RGATCY 2 cut(s) 365, 425
BsuRI GGCC 2 cut(s) 138, 534
BtsCI GGATG 2 cut(s) 409, 637
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 6 cut(s) 140, 167, 409, 523, 532, 642
CfoI GCGC 3 cut(s) 36, 613, 637
Cfr13I GGNCC 2 cut(s) 55, 533
Csp6I GTAC 2 cut(s) 51, 147
CviAII CATG 4 cut(s) 196, 221, 356, 689
CviQI GTAC 2 cut(s) 51, 147
DdeI CTNAG 4 cut(s) 170, 576, 603, 715
DpnI GATC 5 cut(s) 113, 339, 367, 427, 588
DpnII GATC 5 cut(s) 111, 337, 365, 425, 586
EaeI YGGCCR 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 383, 481
FaeI CATG 4 cut(s) 199, 224, 359, 692
FatI CATG 4 cut(s) 195, 220, 355, 688
Fnu4HI GCNGC 2 cut(s) 504, 638
FokI GGATG 2 cut(s) 416, 644
Fsp4HI GCNGC 2 cut(s) 504, 638
FspBI CTAG 3 cut(s) 150, 522, 641
GlaI GCGC 3 cut(s) 35, 612, 636
GluI GCNGC 2 cut(s) 504, 638
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 2 cut(s) 138, 534
HhaI GCGC 3 cut(s) 36, 613, 637
Hin1II CATG 4 cut(s) 199, 224, 359, 692
Hin6I GCGC 3 cut(s) 34, 611, 635
HinP1I GCGC 3 cut(s) 34, 611, 635
HinfI GANTC 1 cut(s) 569
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 277, 337, 349, 568
Hpy188III TCNNGA 3 cut(s) 236, 511, 578
HpyAV CCTTC 4 cut(s) 93, 354, 382, 541
HpyCH4III ACNGT 2 cut(s) 55, 146
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 527, 531, 608, 641
HpyF3I CTNAG 4 cut(s) 170, 576, 603, 715
Hsp92II CATG 4 cut(s) 199, 224, 359, 692
HspAI GCGC 3 cut(s) 34, 611, 635
Kzo9I GATC 5 cut(s) 111, 337, 365, 425, 586
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 2 cut(s) 490, 624
LweI GCATC 4 cut(s) 394, 589, 622, 654
MaeI CTAG 3 cut(s) 150, 522, 641
MaeIII GTNAC 1 cut(s) 475
MalI GATC 5 cut(s) 113, 339, 367, 427, 588
MboI GATC 5 cut(s) 111, 337, 365, 425, 586
MboII GAAGA 3 cut(s) 286, 385, 556
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 2 cut(s) 365, 425
MhlI GDGCHC 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 5 cut(s) 12, 320, 618, 670, 677
MluNI TGGCCA 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 3 cut(s) 45, 261, 495
Msp20I TGGCCA 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 385, 483
MunI CAATTG 1 cut(s) 670
MvaI CCWGG 2 cut(s) 385, 483
MwoI GCNNNNNNNGC 5 cut(s) 404, 527, 531, 608, 641
NdeII GATC 5 cut(s) 111, 337, 365, 425, 586
NheI GCTAGC 2 cut(s) 521, 640
NlaIII CATG 4 cut(s) 199, 224, 359, 692
PfeI GAWTC 1 cut(s) 569
Pfl23II CGTACG 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 2 cut(s) 505, 639
Psp6I CCWGG 2 cut(s) 383, 481
PspGI CCWGG 2 cut(s) 383, 481
PspLI CGTACG 1 cut(s) 50
PspPI GGNCC 2 cut(s) 55, 533
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 2 cut(s) 365, 425
RsaI GTAC 2 cut(s) 52, 148
RsaNI GTAC 2 cut(s) 51, 147
SaqAI TTAA 3 cut(s) 45, 261, 495
SatI GCNGC 2 cut(s) 504, 638
Sau3AI GATC 5 cut(s) 111, 337, 365, 425, 586
Sau96I GGNCC 2 cut(s) 55, 533
SbfI CCTGCAGG 1 cut(s) 532
ScrFI CCNGG 2 cut(s) 385, 483
SdaI CCTGCAGG 1 cut(s) 532
SduI GDGCHC 1 cut(s) 564
SetI ASST 9 cut(s) 33, 111, 134, 307, 443, 459, 555, 585, 646
SfaNI GCATC 4 cut(s) 394, 589, 622, 654
SfcI CTRYAG 3 cut(s) 528, 645, 708
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse8387I CCTGCAGG 1 cut(s) 532
Sse9I AATT 5 cut(s) 12, 320, 618, 670, 677
SspMI CTAG 3 cut(s) 150, 522, 641
StyD4I CCNGG 2 cut(s) 383, 481
TaaI ACNGT 2 cut(s) 55, 146
TaqI TCGA 1 cut(s) 27
TasI AATT 5 cut(s) 12, 320, 618, 670, 677
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 3 cut(s) 45, 261, 495
Tru9I TTAA 3 cut(s) 45, 261, 495
TseI GCWGC 2 cut(s) 503, 637
TspDTI ATGAA 4 cut(s) 90, 184, 561, 677
Van91I CCANNNNNTGG 1 cut(s) 620
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 3 cut(s) 150, 522, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.